BAC Information

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BAC

Clone NameB6Ng01-322C04
Chromosome5 (Build37)
Map Location 38,147,540 - 38,290,147
singlet/doubletdoublet
Overlap geneMsx1
Upstream geneMrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322C04.bB6Ng01-322C04.g
ACCGA111058GA111059
length8381,158
definitionB6Ng01-322C04.b B6Ng01-322C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,289,047 - 38,290,147)(38,147,540 - 38,148,696)
sequence
gaattctgcctaccagacaccttagtattcctgtcctttcttccaatagc
atctgtgtcctggtcagggacctggtcagggtcatttgacaggaatagtt
gttacctgttactggaacatttgcttcaaatctttctgctggacgaaagc
tagccaaattcaccaggagatcatggggacttgggggaaagcatgtttgc
acagggccttgggtctaaccttccaacggcctgcaaaatcatagcaagac
ccttagcttctccatgtgtggcagccctccacggggaataattgatatca
tcgaagccatccttgtccttcagtcctcttacctggctcacagtgagcct
gagaggtcccgatttatttccaggccactcggaagagggaagctggaaag
tccatagctgtggcttcactgctgcttcccagatggctgtaaggtgcatt
ctagcatggtgaaaagactgcccagccggtccttttcaggaagccaagcc
accacagtgctaattctgcaggctgtcatcgttgggcatcactgcgtgct
gatggtcggccgagtgagtgtaaatagagtcaagattttgctctacaaat
gccttggcgcacagctgctcctgggaacacccccccctcacccccccgtc
catgccatgtttgaagcgacttctaattggcctcatcctgacccagcctt
ggagagaggccctagctggtctcagccaccatgaaaggcagcagatgggg
ttcggagcacccctgagcatcactactgggtgtggaaactggcagaagct
gatgtttggaagacagcaatccagaggcccagctctgc
gaattctttatgttcagacagagtgatagaaaacccagaagaatctcaac
ctccaagaaatcaaagccatcaccctccttacacggagcagcacagggtg
ctgtcgtctgagtccctccagatcactgctttgcgcacagttgtgaacca
atctgtgaggaagaggaataactttgtcatccctcaagaattagctgctg
gggattgagctggatgaatgcaggcttagacaggaggtatcacactcagg
gtctaccacccctgtcatcccagctagttaggaggctgaggcaggaggat
cacagtgcaagaactacctgagtgaaagtgtgttccaaatcagcctgggc
aacttagagaaagaaaccctgcctcaaagtttgaaaggtggagggatcca
gctcagcggtagagagcacgcctacactgtaaatgcatcatattaaataa
ataggtggagaggcgaatcagcagttaagagctcttattgataggaccca
agttcaagtctcagcacccatactgaacagctcacagccacctgtaaccc
cagcaccagggaatctaactccttcttctggtctctacaaatatgatcca
cttacatacacacatgtacacacacacacacacacacaaataataaataa
cttacacatcatccccacactgtgtaaagatgaaactccatcactacaca
tcttgggatttctttgcaagagctcttttgggtggataacccctgtctcc
cagacaacagctccttcgagtagtggcagtctgtgtgcactgccttgcct
ggcctggcaagttactgttggacttataccacagggcgactagagttagt
gaggatgcaggtcaaagatgcccctggcagctggcagagactgataaaca
gagtgaggtctgacagaggcagaaggaggagacccgctcttattgtcaca
ctgcaaacccctaccgtgcctcccaaggcaccagctggcttgaggaatca
cccacaataaatgcacacaataaacctccaacattttggactctgcattt
ttttctaaggtctttgagaatgcaatggtgaggtttcacggggattcccc
aagcttctgtgttatcttgcttgttacctctggttctactcaagttcttc
atcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38289047_38290147
seq2: B6Ng01-322C04.b_49_1141 (reverse)

seq1  AAAAGCATGTCCAAATGCCAAGCCATGTTGCTGGGTGACCCTCCCTGGCT  50
      |||||||||| ||||||| |  | ||| |||||||||| ||| |||||||
seq2  AAAAGCATGT-CAAATGCAAGTCAATGATGCTGGGTGAACCT-CCTGGCT  48

seq1  GTATCGCCGCCTGCCC-AGGGAAGACAATGCTAATGAAATGCCAATAAAA  99
      |||||||   |||||| ||||||||| ||||||||||||||||||| |||
seq2  GTATCGC--GCTGCCCAAGGGAAGAC-ATGCTAATGAAATGCCAAT-AAA  94

seq1  TATTTTGAAGGAAAGTATGAAGGCTTCAAAATGAGTTAATTAAAAGCGGA  149
      |||||   ||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTT--GAGGAAAGTATGAAGGCTTCAAAATGAGTTAATT-AAAGCGGA  141

seq1  TCAAACACAAGGCTCCAAAAGTATGTGCAGTAAATTTTGGGCTTGAAATT  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-AACACAAGGCTCCAAAAGTATGTGCAGTAAATTTTGGGCTTGAAATT  190

seq1  TGACAGAGGGAAAGTTTTGGTTTGGTTTGGTTTTGTCCCCAGCACTAG-G  248
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGACAGAGGGAAAGTTTTGGTTTGGTTTGGTTTTGTCCCCAGCACTAGNN  240

seq1  CAGAACTTTAAAGTGGCAGAGCTGGGCCTCTGGATTGCTGTCTTCCAAAC  298
                     |||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNGCAGAGCTGGGCCTCTGGATTGCTGTCTTCCAAAC  290

seq1  ATCAGCTTCTGCCAGTTTCCACACCCAGTAGTGATGCTCAGGGGTGCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTCTGCCAGTTTCCACACCCAGTAGTGATGCTCAGGGGTGCTCC  340

seq1  GAACCCCATCTGCTGCCTTTCATGGTGGCTGAGACCAGCTAGGGCCTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCATCTGCTGCCTTTCATGGTGGCTGAGACCAGCTAGGGCCTCTC  390

seq1  TCCAAGGCTGGGTCAGGATGAGGCCAATTAGAAGTCGCTTCAAACATGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTGGGTCAGGATGAGGCCAATTAGAAGTCGCTTCAAACATGGC  440

seq1  ATGGACGGGGGGGGGAGGGGGGGGTGTTCCCAGGAGCAGCTGTGCGCCAA  498
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGACGGGGGGGTGAGGGGGGGGTGTTCCCAGGAGCAGCTGTGCGCCAA  490

seq1  GGCATTTGTAGAGCAAAATCTTGACTCTATTTACACTCACTCGGCCGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTAGAGCAAAATCTTGACTCTATTTACACTCACTCGGCCGACC  540

seq1  ATCAGCACGCAGTGATGCCCAACGATGACAGCCTGCAGAATTAGCACTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACGCAGTGATGCCCAACGATGACAGCCTGCAGAATTAGCACTGT  590

seq1  GGTGGCTTGGCTTCCTGAAAAGGACCGGCTGGGCAGTCTTTTCACCATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTGGCTTCCTGAAAAGGACCGGCTGGGCAGTCTTTTCACCATGC  640

seq1  TAGAATGCACCTTACAGCCATCTGGGAAGCAGCAGTGAAGCCACAGCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCACCTTACAGCCATCTGGGAAGCAGCAGTGAAGCCACAGCTAT  690

seq1  GGACTTTCCAGCTTCCCTCTTCCGAGTGGCCTGGAAATAAATCGGGACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCCAGCTTCCCTCTTCCGAGTGGCCTGGAAATAAATCGGGACCT  740

seq1  CTCAGGCTCACTGTGAGCCAGGTAAGAGGACTGAAGGACAAGGATGGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCACTGTGAGCCAGGTAAGAGGACTGAAGGACAAGGATGGCTT  790

seq1  CGATGATATCAATTATTCCCCGTGGAGGGCTGCCACACATGGAGAAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGATATCAATTATTCCCCGTGGAGGGCTGCCACACATGGAGAAGCTA  840

seq1  AGGGTCTTGCTATGATTTTGCAGGCCGTTGGAAGGTTAGACCCAAGGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTGCTATGATTTTGCAGGCCGTTGGAAGGTTAGACCCAAGGCCC  890

seq1  TGTGCAAACATGCTTTCCCCCAAGTCCCCATGATCTCCTGGTGAATTTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAACATGCTTTCCCCCAAGTCCCCATGATCTCCTGGTGAATTTGG  940

seq1  CTAGCTTTCGTCCAGCAGAAAGATTTGAAGCAAATGTTCCAGTAACAGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCGTCCAGCAGAAAGATTTGAAGCAAATGTTCCAGTAACAGGT  990

seq1  AACAACTATTCCTGTCAAATGACCCTGACCAGGTCCCTGACCAGGACACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTATTCCTGTCAAATGACCCTGACCAGGTCCCTGACCAGGACACA  1040

seq1  GATGCTATTGGAAGAAAGGACAGGAATACTAAGGTGTCTGGTAGGCAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTGGAAGAAAGGACAGGAATACTAAGGTGTCTGGTAGGCAGAA  1090

seq1  TTC  1101
      |||
seq2  TTC  1093

seq1: chr5_38147540_38148696
seq2: B6Ng01-322C04.g_66_1223

seq1  GAATTCTTTATGTTCAGACAGAGTGATAGAAAACCCAGAAGAATCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTTCAGACAGAGTGATAGAAAACCCAGAAGAATCTCAAC  50

seq1  CTCCAAGAAATCAAAGCCATCACCCTCCTTACACGGAGCAGCACAGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAAATCAAAGCCATCACCCTCCTTACACGGAGCAGCACAGGGTG  100

seq1  CTGTCGTCTGAGTCCCTCCAGATCACTGCTTTGCGCACAGTTGTGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTCTGAGTCCCTCCAGATCACTGCTTTGCGCACAGTTGTGAACCA  150

seq1  ATCTGTGAGGAAGAGGAATAACTTTGTCATCCCTCAAGAATTAGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGGAAGAGGAATAACTTTGTCATCCCTCAAGAATTAGCTGCTG  200

seq1  GGGATTGAGCTGGATGAATGCAGGCTTAGACAGGAGGTATCACACTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGAGCTGGATGAATGCAGGCTTAGACAGGAGGTATCACACTCAGG  250

seq1  GTCTACCACCCCTGTCATCCCAGCTAGTTAGGAGGCTGAGGCAGGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCACCCCTGTCATCCCAGCTAGTTAGGAGGCTGAGGCAGGAGGAT  300

seq1  CACAGTGCAAGAACTACCTGAGTGAAAGTGTGTTCCAAATCAGCCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCAAGAACTACCTGAGTGAAAGTGTGTTCCAAATCAGCCTGGGC  350

seq1  AACTTAGAGAAAGAAACCCTGCCTCAAAGTTTGAAAGGTGGAGGGATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAGAAAGAAACCCTGCCTCAAAGTTTGAAAGGTGGAGGGATCCA  400

seq1  GCTCAGCGGTAGAGAGCACGCCTACACTGTAAATGCATCATATTAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCGGTAGAGAGCACGCCTACACTGTAAATGCATCATATTAAATAA  450

seq1  ATAGGTGGAGAGGCGAATCAGCAGTTAAGAGCTCTTATTGATAGGACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGAGAGGCGAATCAGCAGTTAAGAGCTCTTATTGATAGGACCCA  500

seq1  AGTTCAAGTCTCAGCACCCATACTGAACAGCTCACAGCCACCTGTAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTCTCAGCACCCATACTGAACAGCTCACAGCCACCTGTAACCC  550

seq1  CAGCACCAGGGAATCTAACTCCTTCTTCTGGTCTCTACAAATATGATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAGGGAATCTAACTCCTTCTTCTGGTCTCTACAAATATGATCCA  600

seq1  CTTACATACACACATGTACACACACACACACACACACAAATAATAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATACACACATGTACACACACACACACACACACAAATAATAAATAA  650

seq1  CTTACACATCATCCCCACACTGTGTAAAGATGAAACTCCATCACTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACATCATCCCCACACTGTGTAAAGATGAAACTCCATCACTACACA  700

seq1  TCTTGGGATTTCTTTGCAAGAGCTCTTTTGGGTGGATAACCCCTGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGATTTCTTTGCAAGAGCTCTTTTGGGTGGATAACCCCTGTCTCC  750

seq1  CAGACAACAGCTCCTTCGAGTAGTGGCAGTCTGTGTGCACTGCCTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACAGCTCCTTCGAGTAGTGGCAGTCTGTGTGCACTGCCTTGCCT  800

seq1  GGCCTGGCAAGTTACTGTTGGACTTATACCACAGGGCGACTAGAGTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCAAGTTACTGTTGGACTTATACCACAGGGCGACTAGAGTTAGT  850

seq1  GAGGATGCAGGTCAAAGATGCCCCTGGCAGCTGGCAGAGACTGATAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCAGGTCAAAGATGCCCCTGGCAGCTGGCAGAGACTGATAAACA  900

seq1  GAGTGAGGTCTGACAGAGGCAGAAGGAGGAGACCCGCTCTTATTGTCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTGAGGTCTGACAGAGGCAGAAGGAGGAGACCCGCTCTTATTGTC-AC  949

seq1  ACTGCAAACCCCTACCGTGCCTCCCAAGGCACCAGCTGGCTTGAGGAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACCCCTACCGTGCCTCCCAAGGCACCAGCTGGCTTGAGGAATC  999

seq1  ACCCACAATAAATGCACACAATAAACCTC--ACATTTTGGACTCTGCCAT  1048
      |||||||||||||||||||||||||||||  ||||||||||||||| |||
seq2  ACCCACAATAAATGCACACAATAAACCTCCAACATTTTGGACTCTG-CAT  1048

seq1  TTTTTTCT-AGGTCTTTGAG-ATGCA--TGTGAGG-TTCACGGGGATTTC  1093
      |||||||| ||||||||||| |||||   |||||| |||||||||||| |
seq2  TTTTTTCTAAGGTCTTTGAGAATGCAATGGTGAGGTTTCACGGGGATTCC  1098

seq1  CCCAGC-TCTGTGGTTATCCTTGCTTGTACCCTCTGTGTTCTTACTCCAG  1142
      || ||| ||||| ||||| |||||||||  |||||| |||| |||| || 
seq2  CCAAGCTTCTGT-GTTAT-CTTGCTTGTTACCTCTG-GTTC-TACT-CAA  1143

seq1  GTTCTTCATCATCTT  1157
      |||||||||||||||
seq2  GTTCTTCATCATCTT  1158