BAC Information

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BAC

Clone NameB6Ng01-322D05
Chromosome5 (Build37)
Map Location 68,686,231 - 68,687,371
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322D05.bB6Ng01-322D05.g
ACCGA111104GA111105
length1,2151,128
definitionB6Ng01-322D05.b B6Ng01-322D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccgtggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcttactctctctccc
cgctttacttctgatagattgccctgaatttcatctagaatccgccctat
cttaatcacctgataacatgtgaaaaggaacaaaagggcttctaacacta
gaaaaaattcaaggccaaacattttccactttacttctgatagactgtct
tgaatttccttagaaagttcaaggccaggcttacctcgtaaagctgtact
cactggtactctcgttccccagctgaaaagttctgaattcatacagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaattcggcaccaattgttattagacgcgttctcacgcccg
gccaggaagaacaccacagaccagaatcttctgcggcaaaactttattgc
ttacatcttcaggagcaggagtgcaagaagcaagagagcgagaaaacgaa
aacccgtcccttttttaggagagttatatttcgcctaggacgtgtcactc
cctgattggctgcagcccatcggccgagttgacgtcacggggaaggcaga
gcacatggagtggagaaccaccctcggcatatgcgcagtttatttgttta
ccacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgggcg
cggctcccaacaggtacctgaaaggggagaatggaaatgaaaaggcaggt
gagagagaagatgaagccagacaaggtttctgatctaggctcacgtttat
agtcagcactgtgtttatatagggagagccacagacccattcttgttcag
ctggatggtgcagagccaagctggaccagccactctgctctggtagaact
gcaaggttgaaactccacctagctgcttagtttcaagccctggtgtggca
actaccacatcttag
gaattcatggaatgaagagaagaaagaacatgtttagaagcacatggaaa
cttgaaatctagctgatgtatgttgtatcacatgaacttattcctttttg
tgtgcttttattaagaactttgaaggtctctactaagctaattgattatt
ttgtgtgtaagaaaagtgtgtgtgtttgtgaataatgacattttatattc
caggacttggattagttactttctctttaagccttcactgaacactctga
aattattctatgaagaattgggtcaatcgagtcattcaacttgtaatgcg
agagtttctgtttctcgtaagccagctagagtttaaagttaatgttattc
tggagtcctcagatattggctgtggactgtagagctattccaagctctgg
gatgggcttctgtttaaccaaaaagtcattggttcatattcttattttat
ttctcccctagaaattcatattgtgtctaaacaaccttcatgaaggtata
atataatgaaattaaaatcatgtaattaagtaaatatgaaaggtttacat
tataaagaggttgttatggaatagtaactaggaacgttttcaaatcctat
actgaatgagttataacactacctcttagttcttcatgacatcagggaat
cattgcttgtgagtaaactacagccatgcgaaccaagtactcctgaaagg
caggctggggctgaaagagactagagggcgagaaaagaatgaggccaaga
caatttttttctgatgaaagcccccaaagtttactaagagtctgtgctta
taaagaggggaggcccatcccctgccaatccattcttggtgcctggagcc
agcctgtaggtgacatgcaggataggatgtgtctccagaatgtctcaagg
gtctctcagcagtagcagagtcccggaaaagtgcagcagtagttgacata
acatagagccatctagaaggagctacacctcagtgatctcttattcagtg
ggggcaaagtctgatcagctgctcaaggctgaggaggctcatgcttatca
ctgtattgtgaagtaacctgactctggcttgagaatatgttcctgggtcc
atcactggatgaagcatgaacccaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68686231_68687371
seq2: B6Ng01-322D05.g_67_1194

seq1  GAATTCATGGAATGAAGAGAAGAAAGAACATGTTTAGAAGCACATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAATGAAGAGAAGAAAGAACATGTTTAGAAGCACATGGAAA  50

seq1  CTTGAAATCTAGCTGATGTATGTTGTATCACATGAACTTATTCCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATCTAGCTGATGTATGTTGTATCACATGAACTTATTCCTTTTTG  100

seq1  TGTGCTTTTATTAAGAACTTTGAAGGTCTCTACTAAGCTAATTGATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTATTAAGAACTTTGAAGGTCTCTACTAAGCTAATTGATTATT  150

seq1  TTGTGTGTAAGAAAAGTGTGTGTGTTTGTGAATAATGACATTTTATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAAGAAAAGTGTGTGTGTTTGTGAATAATGACATTTTATATTC  200

seq1  CAGGACTTGGATTAGTTACTTTCTCTTTAAGCCTTCACTGAACACTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTGGATTAGTTACTTTCTCTTTAAGCCTTCACTGAACACTCTGA  250

seq1  AATTATTCTATGAAGAATTGGGTCAATCGAGTCATTCAACTTGTAATGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTATGAAGAATTGGGTCAATCGAGTCATTCAACTTGTAATGCG  300

seq1  AGAGTTTCTGTTTCTCGTAAGCCAGCTAGAGTTTAAAGTTAATGTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTGTTTCTCGTAAGCCAGCTAGAGTTTAAAGTTAATGTTATTC  350

seq1  TGGAGTCCTCAGATATTGGCTGTGGACTGTAGAGCTATTCCAAGCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTCAGATATTGGCTGTGGACTGTAGAGCTATTCCAAGCTCTGG  400

seq1  GATGGGCTTCTGTTTAACCAAAAAGTCATTGGTTCATATTCTTATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTTCTGTTTAACCAAAAAGTCATTGGTTCATATTCTTATTTTAT  450

seq1  TTCTCCCCTAGAAATTCATATTGTGTCTAAACAACCTTCATGAAGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCTAGAAATTCATATTGTGTCTAAACAACCTTCATGAAGGTATA  500

seq1  ATATAATGAAATTAAAATCATGTAATTAAGTAAATATGAAAGGTTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAAATTAAAATCATGTAATTAAGTAAATATGAAAGGTTTACAT  550

seq1  TATAAAGAGGTTGTTATGGAATAGTAACTAGGAACGTTTTCAAATCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAGGTTGTTATGGAATAGTAACTAGGAACGTTTTCAAATCCTAT  600

seq1  ACTGAATGAGTTATAACACTACCTCTTAGTTCTTCATGACATCAGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGAGTTATAACACTACCTCTTAGTTCTTCATGACATCAGGGAAT  650

seq1  CATTGCTTGTGAGTAAACTACAGCCATGCGAACCAAGTACTCCTGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTGTGAGTAAACTACAGCCATGCGAACCAAGTACTCCTGAAAGG  700

seq1  CAGGCTGGGGCTGAAAGAGACTAGAGGGCGAGAAAAGAATGAGGCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGGCTGAAAGAGACTAGAGGGCGAGAAAAGAATGAGGCCAAGA  750

seq1  CAATTTTTTTCTGATGAAAGCCCCCAAAGTTTACTAAGAGTCTGTGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTCTGATGAAAGCCCCCAAAGTTTACTAAGAGTCTGTGCTTA  800

seq1  TAAAGAGGGGAGGCCCATCCCCTGCCAATCCATTCTTGGTGCCTGGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGGGAGGCCCATCCCCTGCCAATCCATTCTTGGTGCCTGGAGCC  850

seq1  AGCCTGTAGGTGACATGCAGGATAGGATGTGTCTCCAGAATGTCTCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGGTGACATGCAGGATAGGATGTGTCTCCAGAATGTCTCAAGG  900

seq1  GTCTCTCAGCAGGTAGCAGAGTCCCGGAAAAGTGCAGCAGTAGTTGACAT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAGCA-GTAGCAGAGTCCCGGAAAAGTGCAGCAGTAGTTGACAT  949

seq1  AACAATAGAGCCATCTAAGAAGGAAGGCTACACCTCAGGTGATCTCTTAT  1000
      ||| |||||||||||| |||||||  ||||||||||| ||||||||||||
seq2  AAC-ATAGAGCCATCT-AGAAGGA--GCTACACCTCA-GTGATCTCTTAT  994

seq1  TCAGTGGGGGCAAAGTCTGAATCAGCCTGCTTCAAGGCTGAGGGAGGCTC  1050
      ||||||||||||||||||| ||||| |||| |||||||||| ||||||||
seq2  TCAGTGGGGGCAAAGTCTG-ATCAG-CTGC-TCAAGGCTGA-GGAGGCTC  1040

seq1  CAATTGCTATCACTGTATTGTGAAGTAACCTGACTTCTTGGGCTTGAG-A  1099
        ||   ||||||||||||||||||||||||||| |||  |||||||| |
seq2  --ATGCTTATCACTGTATTGTGAAGTAACCTGAC-TCT--GGCTTGAGAA  1085

seq1  TATGTTCTTGG--TCATCACTGGTTGGAAAGCATGAA-CCAAATC  1141
      ||||||| |||   ||||||||| ||  ||||||||| |||||||
seq2  TATGTTCCTGGGTCCATCACTGGATG--AAGCATGAACCCAAATC  1128