BAC Information

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BAC

Clone NameB6Ng01-322N09
Chromosome5 (Build37)
Map Location 64,389,058 - 64,559,977
singlet/doubletdoublet
Overlap geneLOC100041646, Pgm1, Tbc1d1
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636
Downstream genePpia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322N09.bB6Ng01-322N09.g
ACCGA111576GA111577
length1,0011,087
definitionB6Ng01-322N09.b B6Ng01-322N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,389,058 - 64,389,906)(64,558,889 - 64,559,977)
sequence
gaattccattctggttttgcataaataagatcacaatagtcatgggccac
acatctctggtccccaaaagtgccactgtttctttcctcagccacatttc
aatacacctcttctggtatcttctagaaaagagagaaagaagtctaccac
aaacagcagtgggcccagtttatgaggaggcctcctcatagcctttgggg
aataaggcaagaggagagccatgagttcaaggtcaacctgggatatatag
taagaggcaggcccacagagttaggccttccttgtctcagaaaaaaaaaa
atctgaccaaacataaaacaaaaagaacagtacacaccatggggtgaact
gaacaggtgaagctcagaaagggttattaggccagtgcaagcatccactt
catacctcacggtggatacatggtactgtgtatttgtcaagactcccagc
actgaaaagcacaaagaaccaacctggatacatgcacttctgaaacacaa
ataattgtattattgtactatgatgataatgatgtgtgtgtgtacatgaa
gtgtgcatatgggtccacatgccacggcatgtgcatagaggtcagaagac
aactttgtaacatccactctctccatccacctttctgtatatttgtggga
ttgaatttttgtcccaaatctttggaataagtgcctttatccaaggagat
atctcaccagcccctaaaacatcattttgataggggggagtctctggcat
gaagtgaatatatgtcaatatcaatattctaactatatgaaaccatttct
ctatagaatatgggtggattgctgactcaaggactttatgagaaggatct
gagactccaccacagaagaaaactgtgcgtgaaatactgtgttctacaga
agacagattattttccccactaaggcctaaaattctaatatcactatttg
ttcatactaggaatgagcaatttaaaccacgcttggctcctcactgctag
a

gaattccagtaaaagaagctgggcttagagaactgcactatggggagggg
tacatccaccttgcaccagaggaagtcactgtttctatcaaccgtagatg
tttatggcagaaacatgatgagagatgtagttcagaacaaaggcacttgg
tatccctgctcgggagatgtgtagaaacatgagggacccacagagaagaa
tcatctctcaaccagccccactctcatcttttgattccaacctaaatatt
tgcatcactgctgaagcaaccacagcctctttcttcccagtagctcagag
ccgccagcagcacgtcctttccattactgaactctgaggcttgtcattgt
gtttactttaagagtctgaataggcatccttcaacaggattgcaagcttt
ataaactgttaaagtttggagttagaaaaaaatcaatattcaaattctaa
accttttctaagatcaaaatgaagtctgttctttactctgttttcccata
tttcatatatatgaacatccatatatatgcatgtattctaaaagtaacat
ttttgtattttgaacatagcttagaactaattttcaagatgtatttttgt
tatttctaagtatgtgtgtgtatgtgggtatgagcccatgaatgcagggg
cccttggaggtcaaaagtatcaggtctccctggagctggagctggagctg
caggcagttgtgaggcaaccaaagtgggtgttggaaatcaggctctagtc
ttcttaaagagtgggtatgaactcttaactgaggaacctctcaagcccca
gtgctataggttggcttttttatttattttaatattcaaacctccaacaa
taaagcaatattactttatttaaatattgctatctttaaaacataaagat
agccgtgtaacaataaagcaatatatacctgaaaatatttatgaaagtgg
gagtctcttccctctcatcctctactctggcatacagcctttcatgttac
agtagccctaaaagttcatatatccagtaagtgatgttctctcccccttt
acaggtaaaagcctggcttgacttcaagcccggtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64389058_64389906
seq2: B6Ng01-322N09.b_48_896

seq1  GAATTCCATTCTGGTTTTGCATAAATAAGATCACAATAGTCATGGGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTGGTTTTGCATAAATAAGATCACAATAGTCATGGGCCAC  50

seq1  ACATCTCTGGTCCCCAAAAGTGCCACTGTTTCTTTCCTCAGCCACATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGGTCCCCAAAAGTGCCACTGTTTCTTTCCTCAGCCACATTTC  100

seq1  AATACACCTCTTCTGGTATCTTCTAGAAAAGAGAGAAAGAAGTCTACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCTCTTCTGGTATCTTCTAGAAAAGAGAGAAAGAAGTCTACCAC  150

seq1  AAACAGCAGTGGGCCCAGTTTATGAGGAGGCCTCCTCATAGCCTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGTGGGCCCAGTTTATGAGGAGGCCTCCTCATAGCCTTTGGGG  200

seq1  AATAAGGCAAGAGGAGAGCCATGAGTTCAAGGTCAACCTGGGATATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCAAGAGGAGAGCCATGAGTTCAAGGTCAACCTGGGATATATAG  250

seq1  TAAGAGGCAGGCCCACAGAGTTAGGCCTTCCTTGTCTCAGAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCAGGCCCACAGAGTTAGGCCTTCCTTGTCTCAGAAAAAAAAAA  300

seq1  ATCTGACCAAACATAAAACAAAAAGAACAGTACACACCATGGGGTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCAAACATAAAACAAAAAGAACAGTACACACCATGGGGTGAACT  350

seq1  GAACAGGTGAAGCTCAGAAAGGGTTATTAGGCCAGTGCAAGCATCCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGTGAAGCTCAGAAAGGGTTATTAGGCCAGTGCAAGCATCCACTT  400

seq1  CATACCTCACGGTGGATACATGGTACTGTGTATTTGTCAAGACTCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCACGGTGGATACATGGTACTGTGTATTTGTCAAGACTCCCAGC  450

seq1  ACTGAAAAGCACAAAGAACCAACCTGGATACATGCACTTCTGAAACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGCACAAAGAACCAACCTGGATACATGCACTTCTGAAACACAA  500

seq1  ATAATTGTATTATTGTACTATGATGATAATGATGTGTGTGTGTACATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTATTATTGTACTATGATGATAATGATGTGTGTGTGTACATGAA  550

seq1  GTGTGCATATGGGTCCACATGCCACGGCATGTGCATAGAGGTCAGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATATGGGTCCACATGCCACGGCATGTGCATAGAGGTCAGAAGAC  600

seq1  AACTTTGTAACATCCACTCTCTCCATCCACCTTTCTGTATATTTGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTAACATCCACTCTCTCCATCCACCTTTCTGTATATTTGTGGGA  650

seq1  TTGAATTTTTGTCCCAAATCTTTGGAATAAGTGCCTTTATCCAAGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTTGTCCCAAATCTTTGGAATAAGTGCCTTTATCCAAGGAGAT  700

seq1  ATCTCACCAGCCCCTAAAACATCATTTTGATAGGGGGGAGTCTCTGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCAGCCCCTAAAACATCATTTTGATAGGGGGGAGTCTCTGGCAT  750

seq1  GAAGTGAATATATGTCAATATCAATATTCTAACTATATGAAACCATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAATATATGTCAATATCAATATTCTAACTATATGAAACCATTTCT  800

seq1  CTATAGAATATGGGTGGATTGCTGACTCAAGGACTTTATGAGAAGGATC  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATATGGGTGGATTGCTGACTCAAGGACTTTATGAGAAGGATC  849


seq1: chr5_64558889_64559977
seq2: B6Ng01-322N09.g_70_1156 (reverse)

seq1  GTTACCGGGCTGGATGTCAAGCCAGGCTTTTACCTGTAAAGGGGGAGAGA  50
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GTTACCGGGCTTGAAGTCAAGCCAGGCTTTTACCTGTAAAGGGGGAGAGA  50

seq1  ACATCACTTACTGGATTATATGAACTTTTAAGGCTACCTGTTACATGAAA  100
      ||||||||||||||| |||||||||||||| ||||| |||| ||||||||
seq2  ACATCACTTACTGGA-TATATGAACTTTTAGGGCTA-CTGTAACATGAAA  98

seq1  GGCTGTATGCCAGAGTAGAGGATGAGAGGG-AGAGACTCCCACTTTCATA  149
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GGCTGTATGCCAGAGTAGAGGATGAGAGGGAAGAGACTCCCACTTTCAT-  147

seq1  AAATATTTTCAGGTATATATTGCCTTATTGTTACACGGCTATCTTTATGT  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATATTTTCAGGTATATATTGCTTTATTGTTACACGGCTATCTTTATGT  197

seq1  TTTAAAGATAGCAATATTTAAATAAAGTAATATTGCTTTATTGTTGGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATAGCAATATTTAAATAAAGTAATATTGCTTTATTGTTGGAGG  247

seq1  TTTGAATATTTAAAATAAATAAAAAAGCCAACCTATAGCACTGGGGCTTG  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATA-TTAAAATAAATAAAAAAGCCAACCTATAGCACTGGGGCTTG  296

seq1  AGAGGTTCCTCAGTTAAGAGTTCATA-CCACTCTTTAAGAAGACTAGAGC  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGGTTCCTCAGTTAAGAGTTCATACCCACTCTTTAAGAAGACTAGAGC  346

seq1  CTGATTTCCAACACCCACTTTGGTTGCCTCACAACTGCCTGCAGCTCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCCAACACCCACTTTGGTTGCCTCACAACTGCCTGCAGCTCCAG  396

seq1  CTCCAGCTCCAGGGAGACCTGATACTTTTGACCTCCAAGGGCCCCTGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCCAGGGAGACCTGATACTTTTGACCTCCAAGGGCCCCTGCAT  446

seq1  TCATGGGCTCATACCCACATACACACACATACTTAGAAATAACAAAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTCATACCCACATACACACACATACTTAGAAATAACAAAAATA  496

seq1  CATCTTGAAAATTAGTTCTAAGCTATGTTCAAAATACAAAAATGTTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAAAATTAGTTCTAAGCTATGTTCAAAATACAAAAATGTTACTT  546

seq1  TTAGAATACATGCATATATATGGATGTTCATATATATGAAATATGGGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATACATGCATATATATGGATGTTCATATATATGAAATATGGGAAA  596

seq1  ACAGAGTAAAGAACAGACTTCATTTTGATCTTAGAAAAGGTTTAGAATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAAAGAACAGACTTCATTTTGATCTTAGAAAAGGTTTAGAATTT  646

seq1  GAATATTGATTTTTTTCTAACTCCAAACTTTAACAGTTTATAAAGCTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGATTTTTTTCTAACTCCAAACTTTAACAGTTTATAAAGCTTGC  696

seq1  AATCCTGTTGAAGGATGCCTATTCAGACTCTTAAAGTAAACACAATGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTTGAAGGATGCCTATTCAGACTCTTAAAGTAAACACAATGACA  746

seq1  AGCCTCAGAGTTCAGTAATGGAAAGGACGTGCTGCTGGCGGCTCTGAGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGAGTTCAGTAATGGAAAGGACGTGCTGCTGGCGGCTCTGAGCT  796

seq1  ACTGGGAAGAAAGAGGCTGTGGTTGCTTCAGCAGTGATGCAAATATTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGAAAGAGGCTGTGGTTGCTTCAGCAGTGATGCAAATATTTAG  846

seq1  GTTGGAATCAAAAGATGAGAGTGGGGCTGGTTGAGAGATGATTCTTCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATCAAAAGATGAGAGTGGGGCTGGTTGAGAGATGATTCTTCTCT  896

seq1  GTGGGTCCCTCATGTTTCTACACATCTCCCGAGCAGGGATACCAAGTGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCCTCATGTTTCTACACATCTCCCGAGCAGGGATACCAAGTGCC  946

seq1  TTTGTTCTGAACTACATCTCTCATCATGTTTCTGCCATAAACATCTACGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGAACTACATCTCTCATCATGTTTCTGCCATAAACATCTACGG  996

seq1  TTGATAGAAACAGTGACTTCCTCTGGTGCAAGGTGGATGTACCCCTCCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAAACAGTGACTTCCTCTGGTGCAAGGTGGATGTACCCCTCCCC  1046

seq1  ATAGTGCAGTTCTCTAAGCCCAGCTTCTTTTACTGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAGTTCTCTAAGCCCAGCTTCTTTTACTGGAATTC  1087


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