BAC Information

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BAC

Clone NameB6Ng01-323K04
Chromosome18 (Build37)5 (Build37)
Map Location 49,119,099 - 49,119,40595,179,708 - 95,180,863
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323K04.bB6Ng01-323K04.g
ACCGA112163GA112164
length1821,151
definitionB6Ng01-323K04.b B6Ng01-323K04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,119,099 - 49,119,405)(95,179,708 - 95,180,863)
sequence
tgtttcttttatgaagcaaattcagggtcttgttttcacatccattctgt
tagtttgtgtctttggactggaaaattgagcccattgatgttgagagata
ttgatgagcaataagtgatgattcctgttttgatgttggttatgagtgtg
tgtgcgtgcgtgtatgtgtgtgtgtgtgtgtg

gaattcatgaagaaattcagaatgaaactcctttatcatcttattagagt
ctgagaggaagacaggactgctgtaaatcccagaaaataccagatgagga
aggaaataatgagagagtcatgtctttagagttaggggcagcagtggagg
tctgcaaacataatagaaaatgcagatacggtctacagaagacaagggca
aaaagcctagaatatctcagctggcatgtttagaatttacacaggtatta
gagaaaggaagggtaaagactgcacttacaactttgagttagaacccagg
caacaggctggttcggcagtgaagatgactgagcaacaggtaggaggaaa
gtgtaagaacagcagcttattaaggggatgatcactcctcccatgtcctt
ggattatcctcaggtgaaccagctctcctgtgggatggtctacttggcca
agtgattaacaagtcaacttggattaactcctaagataaagggataatgc
aatgtaatgttctaatctttggtacatagtactgtgacaggtttctctca
tggtcagtggtcaaactcatatcctattctatgtccaagagaatgttgct
tccttttaataactgtcaagaaacccagttactctgcctgatccctagta
agaccagtgatacttgctgtgatgaaatacccacaaagaagcagtatatc
tggtaaaagaacttccttgtctcaaagttcaagggaatactgttcatcac
atcaaggaagacacagttgcaagagtgagaatgatcaggatgtgtgcaca
ggtaatgagccaagagtaggcaagggtcatagttaatttgtactctcttt
cttatcctgttatgacaccagcaaatggggtgttgacctcagactatgaa
atagcacctccacattcagactggagcatctgcccaaaacttcttttcac
acaccatcagggtatatttcttgatgagtctaaaggacaccatgtgacaa
tgttaccattatgtaaatgcttcttctgttgtgtttgattgttttggatt
ttgacagtttgtctgtgtagcttggctgtgcttgaactctgccgaccagg
tttgcctaacaatgactcaagcttttttgacttctctggcttatgatggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49119099_49119405
seq2: B6Ng01-323K04.b_83_234 (reverse)

seq1  CACACACTTCAGTTTTAAAAGTCACAGCCACCAGCAAAATAAAAATAATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAACACATGAAGGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTTGTGC  150
                                                       |
seq2  -------------------------------------------------C  1

seq1  GCACACACACACATACACACAC-CACTATCACCATCACTACTAGCACTAA  199
       |||||||||||| ||| |||| |||   |||   ||||     ||  | 
seq2  ACACACACACACACACATACACGCAC--GCACACACACT-----CATAAC  44

seq1  CAACAACAAAATAACAATCAAGAATCTTTGGATATTGTTCTCTCACAATA  249
      ||||| ||||| |  |||||  | |  |||   ||   | |||| ||| |
seq2  CAACATCAAAACAGGAATCATCACTTATTGCTCATCAATATCTCTCAACA  94

seq1  TCAATGGTCTTAATTCCCCAATAAAAAGACACATACTAACAGAATGGATG  299
      ||||||| || ||||  ||| |  ||||||||| ||||||||||||||||
seq2  TCAATGGGCTCAATTTTCCAGTCCAAAGACACAAACTAACAGAATGGATG  144

seq1  TTAAAACA  307
      | ||||||
seq2  TGAAAACA  152


seq1: chr5_95179708_95180863
seq2: B6Ng01-323K04.g_67_1217 (reverse)

seq1  CACCATCATAAGGCAGAGAGGCAAAAAGAGCTCTGAG-CATTG-TAGGCA  48
      |||||||||||| |||||| |  |||| |||| |||| ||||| ||||||
seq2  CACCATCATAAGCCAGAGAAGTCAAAAAAGCT-TGAGTCATTGTTAGGCA  49

seq1  AACCTGGTCTGCAGAGTTCAAGCACAGCCAAAGCTACACAGACAAACTGT  98
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  AACCTGGTCGGCAGAGTTCAAGCACAGCC-AAGCTACACAGACAAACTGT  98

seq1  CAAAATCCAAAAACAATCAAACAACAACAGAAGAAGCATTTACATAATGG  148
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  CAAAATCC-AAAACAATCAAAC-ACAACAGAAGAAGCATTTACATAATGG  146

seq1  TTAACATTGTCACATTGGTGTCCTTTAGACTCATCAAGGAAATATA-CCT  197
       ||||||||||||| |||||||||||||||||||||| |||||||| |||
seq2  -TAACATTGTCACA-TGGTGTCCTTTAGACTCATCAA-GAAATATACCCT  193

seq1  GATGGTGTTGTGAAAAGAAGTTTTGGGCAGATGCTCCAGTCTGAATGTGG  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTG-TGTGAAAAGAAGTTTTGGGCAGATGCTCCAGTCTGAATGTGG  242

seq1  AGGTGCTATTTCATAGTCTGAGGTCAACACCCCATTTGCTGGTGTCATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTATTTCATAGTCTGAGGTCAACACCCCATTTGCTGGTGTCATAA  292

seq1  CAGGATAAGAAAGAGAGTACAAATTAACTATGACCCTTGCCTACTCTTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAGAAAGAGAGTACAAATTAACTATGACCCTTGCCTACTCTTGG  342

seq1  CTCATTACCTGTGCACACATCCTGATCATTCTCACTCTTGCAACTGTGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACCTGTGCACACATCCTGATCATTCTCACTCTTGCAACTGTGTC  392

seq1  TTCCTTGATGTGATGAACAGTATTCCCTTGAACTTTGAGACAAGGAAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGATGTGATGAACAGTATTCCCTTGAACTTTGAGACAAGGAAGTT  442

seq1  CTTTTACCAGATATACTGCTTCTTTGTGGGTATTTCATCACAGCAAGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCAGATATACTGCTTCTTTGTGGGTATTTCATCACAGCAAGTAT  492

seq1  CACTGGTCTTACTAGGGATCAGGCAGAGTAACTGGGTTTCTTGACAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTTACTAGGGATCAGGCAGAGTAACTGGGTTTCTTGACAGTTA  542

seq1  TTAAAAGGAAGCAACATTCTCTTGGACATAGAATAGGATATGAGTTTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAGCAACATTCTCTTGGACATAGAATAGGATATGAGTTTGAC  592

seq1  CACTGACCATGAGAGAAACCTGTCACAGTACTATGTACCAAAGATTAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCATGAGAGAAACCTGTCACAGTACTATGTACCAAAGATTAGAA  642

seq1  CATTACATTGCATTATCCCTTTATCTTAGGAGTTAATCCAAGTTGACTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATTGCATTATCCCTTTATCTTAGGAGTTAATCCAAGTTGACTTG  692

seq1  TTAATCACTTGGCCAAGTAGACCATCCCACAGGAGAGCTGGTTCACCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACTTGGCCAAGTAGACCATCCCACAGGAGAGCTGGTTCACCTGA  742

seq1  GGATAATCCAAGGACATGGGAGGAGTGATCATCCCCTTAATAAGCTGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATCCAAGGACATGGGAGGAGTGATCATCCCCTTAATAAGCTGCTG  792

seq1  TTCTTACACTTTCCTCCTACCTGTTGCTCAGTCATCTTCACTGCCGAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACACTTTCCTCCTACCTGTTGCTCAGTCATCTTCACTGCCGAACC  842

seq1  AGCCTGTTGCCTGGGTTCTAACTCAAAGTTGTAAGTGCAGTCTTTACCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTGCCTGGGTTCTAACTCAAAGTTGTAAGTGCAGTCTTTACCCT  892

seq1  TCCTTTCTCTAATACCTGTGTAAATTCTAAACATGCCAGCTGAGATATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTAATACCTGTGTAAATTCTAAACATGCCAGCTGAGATATTC  942

seq1  TAGGCTTTTTGCCCTTGTCTTCTGTAGACCGTATCTGCATTTTCTATTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTTTGCCCTTGTCTTCTGTAGACCGTATCTGCATTTTCTATTAT  992

seq1  GTTTGCAGACCTCCACTGCTGCCCCTAACTCTAAAGACATGACTCTCTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGACCTCCACTGCTGCCCCTAACTCTAAAGACATGACTCTCTCA  1042

seq1  TTATTTCCTTCCTCATCTGGTATTTTCTGGGATTTACAGCAGTCCTGTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTCCTCATCTGGTATTTTCTGGGATTTACAGCAGTCCTGTCT  1092

seq1  TCCTCTCAGACTCTAATAAGATGATAAAGGAGTTTCATTCTGAATTTCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGACTCTAATAAGATGATAAAGGAGTTTCATTCTGAATTTCTT  1142

seq1  CATGAATTC  1156
      |||||||||
seq2  CATGAATTC  1151


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