BAC Information

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BAC

Clone NameB6Ng01-323L23
Chromosome5 (Build37)
Map Location 64,021,566 - 64,106,823
singlet/doubletdoublet
Overlap gene3110047P20Rik, LOC100042133
Upstream geneCentd1
Downstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L23.bB6Ng01-323L23.g
ACCGA112248GA112249
length9921,093
definitionB6Ng01-323L23.b B6Ng01-323L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,021,566 - 64,022,526)(64,105,718 - 64,106,823)
sequence
gaattccacaactattcaagttcttctccaggtaaatggtaaatttggaa
ttatccacattctctgaacttgaatgtgaccaggacttctttggccagtg
aatatgagttaaaactaagtgtatcgcttttattggaggagtttttaaga
gtcaataggcaattaccccaaatactttttgccctaaaagtgtgtggcta
acatagacctgctaccatctggggacactgagaacccactagaagcaggg
accctctcctaaccttcactgaatatgaagcatgcgaaatagacctattt
agcactgcagtttttaaatcattactgaaaccaattctcaataaagaata
aacaaataatatcttttgttcaacgagcgcattttgatggatgtagcact
tgacaaagttatgtaacaaccatcacaacgcaattttcaaacatcttctc
caggacaacatcatttagtagattttcatcaaagagaaatttgtagccat
cagcagttgctctccgtcccactcacatgctcccagcctcaagcaatcac
tggtattctttctgtctttattaatttctcaaggccagatatttcacaca
gaagaactcactcaatatgtggtcctgtgcagctgcttcctgtcaccaga
cataatgtttgtgaagttattctcaccacagcatccctcactgtattcat
tcttgtttgaggactacatcatgatatggatattgcacatgtatcaatgg
cttatctagcatgacatccagattcccaagaatattgctgacacaaatat
ttgtgccatgtcactgtaggagtaaagactcattatccctggaacggctc
taggaatagaatttctggatgttttgttaactgatttaacagtttgggga
gctggcaaactattttcccaagtgactaaatcatcttgcattcccagtgt
gtgaatgaaacagtgttgggagttttagttttagtcttttac

gaattcaggacagaaactcaaatggggaaaggacctggaggcaggagctg
atgcaaaggcaatggacggatgctgcttaacgtagccattattgctgtaa
ttcatggctgaataaaatgtatttaataattgccttcctcctaaaggatc
actgaagccttccttcatttagagacaccacacaagcctgcagcacactg
tgcaaaccacagaattggcagcataaaaatatttaaaaatgacataaaga
acaccaaggaaagcagagccaagtcccctccacagctgggaatgcacatg
gcaggaggctaacattctccagtgctctgtagcatgcttgtgactaaccc
tgaaagcattagtattgatattacaaattcacacagaaaaattcccttta
tacctgtatgtgtgtctacacgtgcatgtgtggatgccttctgggtctca
aagagttgaaggtctaggtttttgtcagctacctgacaggggtactcttt
cacaagagcaacaaactctcttactcactgagtcatctctctgatcctct
gttattattattattttttttttacagacacagattcacaagtataaaaa
tccatgaattatgaagattgactttgtaattaaaagcttaagaacatttt
tttttcaacctggaaaattagaaacttaatagtataataaaataaaataa
aatttaatttctgagcacaggggttgccctgggagggaaaagtactattg
aaatcaagttaaagatttggaagtttgcctcagaagggcactggagatat
ctgaacgttctggagtcagggaagaccaagccagtgtaatagaagttgct
cggtttgctggtaatgctgcagctcactgattaatgaacagagttcagga
aatctggaatttatgtccaacccataatacaaagaaggtttaggtcagta
taaggaagacgcagagtcaaacctaataaactgtgcacagatcactgctc
atctgctgaggggcagtgtcagatggttctcatgagtacctcactgaatg
ggggggaatgtgccacagtaagccatttcagataggtgggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64021566_64022526
seq2: B6Ng01-323L23.b_46_1006

seq1  GAATTCCACAACTATTCAAGTTCTTCTCCAGGTAAATGGTAAATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTATTCAAGTTCTTCTCCAGGTAAATGGTAAATTTGGAA  50

seq1  TTATCCACATTCTCTGAACTTGAATGTGACCAGGACTTCTTTGGCCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACATTCTCTGAACTTGAATGTGACCAGGACTTCTTTGGCCAGTG  100

seq1  AATATGAGTTAAAACTAAGTGTATCGCTTTTATTGGAGGAGTTTTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGTTAAAACTAAGTGTATCGCTTTTATTGGAGGAGTTTTTAAGA  150

seq1  GTCAATAGGCAATTACCCCAAATACTTTTTGCCCTAAAAGTGTGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAGGCAATTACCCCAAATACTTTTTGCCCTAAAAGTGTGTGGCTA  200

seq1  ACATAGACCTGCTACCATCTGGGGACACTGAGAACCCACTAGAAGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACCTGCTACCATCTGGGGACACTGAGAACCCACTAGAAGCAGGG  250

seq1  ACCCTCTCCTAACCTTCACTGAATATGAAGCATGCGAAATAGACCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCCTAACCTTCACTGAATATGAAGCATGCGAAATAGACCTATTT  300

seq1  AGCACTGCAGTTTTTAAATCATTACTGAAACCAATTCTCAATAAAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCAGTTTTTAAATCATTACTGAAACCAATTCTCAATAAAGAATA  350

seq1  AACAAATAATATCTTTTGTTCAACGAGCGCATTTTGATGGATGTAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAATATCTTTTGTTCAACGAGCGCATTTTGATGGATGTAGCACT  400

seq1  TGACAAAGTTATGTAACAACCATCACAACGCAATTTTCAAACATCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGTTATGTAACAACCATCACAACGCAATTTTCAAACATCTTCTC  450

seq1  CAGGACAACATCATTTAGTAGATTTTCATCAAAGAGAAATTTGTAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAACATCATTTAGTAGATTTTCATCAAAGAGAAATTTGTAGCCAT  500

seq1  CAGCAGTTGCTCTCCGTCCCACTCACATGCTCCCAGCCTCAAGCAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGCTCTCCGTCCCACTCACATGCTCCCAGCCTCAAGCAATCAC  550

seq1  TGGTATTCTTTCTGTCTTTATTAATTTCTCAAGGCCAGATATTTCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCTTTCTGTCTTTATTAATTTCTCAAGGCCAGATATTTCACACA  600

seq1  GAAGAACTCACTCAATATGTGGTCCTGTGCAGCTGCTTCCTGTCACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTCACTCAATATGTGGTCCTGTGCAGCTGCTTCCTGTCACCAGA  650

seq1  CATAATGTTTGTGAAGTTATTCTCACCACAGCATCCCTCACTGTATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTTTGTGAAGTTATTCTCACCACAGCATCCCTCACTGTATTCAT  700

seq1  TCTTGTTTGAGGACTACATCATGATATGGATATTGCACATGTATCAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGAGGACTACATCATGATATGGATATTGCACATGTATCAATGG  750

seq1  CTTATCTAGCATGACATCCAGATTCCCAAGAATATTGCTGACACAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAGCATGACATCCAGATTCCCAAGAATATTGCTGACACAAATAT  800

seq1  TTGTGCCATGTCACTGTAGGAGTAAAGACTCATTATCCCTGGAACGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATGTCACTGTAGGAGTAAAGACTCATTATCCCTGGAACGGCTC  850

seq1  TAGGAATAGAATTTCTGGATGTTTTGTTAACTGATTTAACAGTTTGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATAGAATTTCTGGATGTTTTGTTAACTGATTTAACAGTTTGGGGA  900

seq1  GCTGGCAAACTATTTCCCAAAGTGACTAAATCATCTTGCATTCCCAGTGT  950
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  GCTGGCAAACTATTTTCCCAAGTGACTAAATCATCTTGCATTCCCAGTGT  950

seq1  GTGAATGAAAC  961
      |||||||||||
seq2  GTGAATGAAAC  961


seq1: chr5_64105718_64106823
seq2: B6Ng01-323L23.g_69_1161 (reverse)

seq1  GAACCCAACTATCTGAAATGCTTTTACTGTGGCACATTTTCCCCCCATTT  50
      ||||||| ||||||||||||   |||||||||||||  ||||||||  ||
seq2  GAACCCACCTATCTGAAATG-GCTTACTGTGGCACA--TTCCCCCCCATT  47

seq1  CAGTTGGGGTACCTCATGGAGAACCATCTGACACTGCCCCTCAGCAAGAT  100
      ||| || |||| ||||| ||||||||||||||||||||||||||| ||||
seq2  CAG-TGAGGTA-CTCAT-GAGAACCATCTGACACTGCCCCTCAGC-AGAT  93

seq1  GGAGGCAGGTGATCTGTGCACAGTTTATTAGGTTTGACTCTGCCCTTCTT  150
      |   ||| ||||||||||||||||||||||||||||||||||  | ||||
seq2  G--AGCA-GTGATCTGTGCACAGTTTATTAGGTTTGACTCTG--CGTCTT  138

seq1  CCTTATACTGACCTAAACCTTCTTTGTATTATGGGTTGGACATAAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATACTGACCTAAACCTTCTTTGTATTATGGGTTGGACATAAATTCC  188

seq1  AGATTTCCCTGAACTCTGTTCATTAATCAGTGAGCTGCAGCATTACCAGC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTT-CCTGAACTCTGTTCATTAATCAGTGAGCTGCAGCATTACCAGC  237

seq1  AAACCGAGCAACTTCTATTACACTGGCTTGGTCTTCCCTGACTCCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGAGCAACTTCTATTACACTGGCTTGGTCTTCCCTGACTCCAGAAC  287

seq1  GTTCAGATATCTCCAGTGCCCTTCTGAGGCAAACTTCCAAATCTTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATATCTCCAGTGCCCTTCTGAGGCAAACTTCCAAATCTTTAACT  337

seq1  TGATTTCAATAGTACTTTTCCCTCCCAGGGCAACCCCTGTGCTCAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAATAGTACTTTTCCCTCCCAGGGCAACCCCTGTGCTCAGAAAT  387

seq1  TAAATTTTATTTTATTTTATTATACTATTAAGTTTCTAATTTTCCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATTTTATTTTATTATACTATTAAGTTTCTAATTTTCCAGGTT  437

seq1  GAAAAAAAAATGTTCTTAAGCTTTTAATTACAAAGTCAATCTTCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATGTTCTTAAGCTTTTAATTACAAAGTCAATCTTCATAATT  487

seq1  CATGGATTTTTATACTTGTGAATCTGTGTCTGTAAAAAAAAAATAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTTTATACTTGTGAATCTGTGTCTGTAAAAAAAAAATAATAAT  537

seq1  AATAACAGAGGATCAGAGAGATGACTCAGTGAGTAAGAGAGTTTGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGAGGATCAGAGAGATGACTCAGTGAGTAAGAGAGTTTGTTGCT  587

seq1  CTTGTGAAAGAGTACCCCTGTCAGGTAGCTGACAAAAACCTAGACCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAAAGAGTACCCCTGTCAGGTAGCTGACAAAAACCTAGACCTTCA  637

seq1  ACTCTTTGAGACCCAGAAGGCATCCACACATGCACGTGTAGACACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGAGACCCAGAAGGCATCCACACATGCACGTGTAGACACACATA  687

seq1  CAGGTATAAAGGGAATTTTTCTGTGTGAATTTGTAATATCAATACTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATAAAGGGAATTTTTCTGTGTGAATTTGTAATATCAATACTAATG  737

seq1  CTTTCAGGGTTAGTCACAAGCATGCTACAGAGCACTGGAGAATGTTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGGTTAGTCACAAGCATGCTACAGAGCACTGGAGAATGTTAGCC  787

seq1  TCCTGCCATGTGCATTCCCAGCTGTGGAGGGGACTTGGCTCTGCTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATGTGCATTCCCAGCTGTGGAGGGGACTTGGCTCTGCTTTCCT  837

seq1  TGGTGTTCTTTATGTCATTTTTAAATATTTTTATGCTGCCAATTCTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTTTATGTCATTTTTAAATATTTTTATGCTGCCAATTCTGTGG  887

seq1  TTTGCACAGTGTGCTGCAGGCTTGTGTGGTGTCTCTAAATGAAGGAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAGTGTGCTGCAGGCTTGTGTGGTGTCTCTAAATGAAGGAAGGC  937

seq1  TTCAGTGATCCTTTAGGAGGAAGGCAATTATTAAATACATTTTATTCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATCCTTTAGGAGGAAGGCAATTATTAAATACATTTTATTCAGC  987

seq1  CATGAATTACAGCAATAATGGCTACGTTAAGCAGCATCCGTCCATTGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTACAGCAATAATGGCTACGTTAAGCAGCATCCGTCCATTGCCT  1037

seq1  TTGCATCAGCTCCTGCCTCCAGGTCCTTTCCCCATTTGAGTTTCTGTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCAGCTCCTGCCTCCAGGTCCTTTCCCCATTTGAGTTTCTGTCCT  1087

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1093


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