BAC Information

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BAC

Clone NameB6Ng01-324I13
Chromosome5 (Build37)
Map Location 32,115,549 - 32,248,884
singlet/doubletdoublet
Overlap geneBre
Upstream geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324I13.bB6Ng01-324I13.g
ACCGA112823GA112824
length1,150375
definitionB6Ng01-324I13.b B6Ng01-324I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,115,549 - 32,116,693)(32,248,504 - 32,248,884)
sequence
gaattctgaagacattttataatgaaaagtgaaatacaaagtgtttgctt
taactgaacgattgcagttaatttcttataaagacacacagaagcacaca
ttaatttaaaacaagcccacactgttgtttcttgtagtacagccaggaaa
aacagtaacaagctgtctccttcaaaatcacatccctggatgatattcga
gcaacctggaagattcagtgcgtccccaggaaaagcatttggagtgaggc
tgcagtaacatttctagcttgctttctgcccttgcagggttgccaccagg
tctgagcagcatggactgggcagtgtgtgacgtcagtgccaggtgcaagg
cagcagcacttgtctcagagcgtccgccagtctgtgctgtgaaaaaacaa
gacaaaacaaacaaaaaagaccaaacaaacaaacaagaaaccaatttttt
ttcaatgttgaggatttgttaatcattttgtacactggtgttttgtttga
cattgaatttaataccaatattaattcatattttctttgaaaaacaggta
taaaacggttttgatcttgaccagatcttgtgcttgaaagatatacttta
aagataccaccttaaaattgtgttgcaaaggtcagatctgtagaggaaaa
gggtttagttactgtgcagtctgctattgcaaggtgcttgtatcatattc
aggaaggttagtgtgttagaattagtgttcttccatgtgttgtcacacga
tgtttgcattctgtcggctaggatgctgataaggctcttttctttggagg
acatacttgctttttcatttctgtcccatttgagaatgcttatgagagga
aggaaggatggatcaagagatgctctctgaaatgtctttcctctgtatcc
tttaccctcatgtcttcctgtttaccatcaattctgaagaaagaaataca
actcagaagtgagctgtgtgatccttggagaccccactgaactgggagtt
gagtggtggagtgtagctgtatccttctccctcctcttttgaaagaagaa
acagaaatgacaatcttgtccaggaactttctgatgggccaagacggacg
aatatgggttttaattcctaggtgagcacagcttatagctttggggtact

catggacaagctccaaatcctctgcttctgactctgccgctaccatttac
agccaaatcaacggctctggagatggagacttctgctctatagttcctcc
ctctgcagggcatcctagtgacattccaacacagcagtgctgtgaagctg
agatgctggcagacatttaacagaaatcccaagagtctctggagagcagc
cccactccatggaacagagccacccagcttttcttggtgtcttggaaatg
tgtccacagagaccctgcaatatcccctcacagaaggagaactcttgtag
gcaggagccaatcatccatggcatatgcctatatatctgaaagggagaga
gggagggagaaagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32115549_32116693
seq2: B6Ng01-324I13.b_47_1196

seq1  GAATTCTGAAGACATTTTATAATGAAAAGTGAAATACAAAGTGTTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGACATTTTATAATGAAAAGTGAAATACAAAGTGTTTGCTT  50

seq1  TAACTGAACGATTGCAGTTAATTTCTTATAAAGACACACAGAAGCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAACGATTGCAGTTAATTTCTTATAAAGACACACAGAAGCACACA  100

seq1  TTAATTTAAAACAAGCCCACACTGTTGTTTCTTGTAGTACAGCCAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAAAACAAGCCCACACTGTTGTTTCTTGTAGTACAGCCAGGAAA  150

seq1  AACAGTAACAAGCTGTCTCCTTCAAAATCACATCCCTGGATGATATTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAACAAGCTGTCTCCTTCAAAATCACATCCCTGGATGATATTCGA  200

seq1  GCAACCTGGAAGATTCAGTGCGTCCCCAGGAAAAGCATTTGGAGTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGGAAGATTCAGTGCGTCCCCAGGAAAAGCATTTGGAGTGAGGC  250

seq1  TGCAGTAACATTTCTAGCTTGCTTTCTGCCCTTGCAGGGTTGCCACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAACATTTCTAGCTTGCTTTCTGCCCTTGCAGGGTTGCCACCAGG  300

seq1  TCTGAGCAGCATGGACTGGGCAGTGTGTGACGTCAGTGCCAGGTGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAGCATGGACTGGGCAGTGTGTGACGTCAGTGCCAGGTGCAAGG  350

seq1  CAGCAGCACTTGTCTCAGAGCGTCCGCCAGTCTGTGCTGTGAAAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCACTTGTCTCAGAGCGTCCGCCAGTCTGTGCTGTGAAAAAACAA  400

seq1  GACAAAACAAACAAAAAAGACCAAACAAACAAACAAGAAACCAATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACAAACAAAAAAGACCAAACAAACAAACAAGAAACCAATTTTTT  450

seq1  TTCAATGTTGAGGATTTGTTAATCATTTTGTACACTGGTGTTTTGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTGAGGATTTGTTAATCATTTTGTACACTGGTGTTTTGTTTGA  500

seq1  CATTGAATTTAATACCAATATTAATTCATATTTTCTTTGAAAAACAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTTAATACCAATATTAATTCATATTTTCTTTGAAAAACAGGTA  550

seq1  TAAAACGGTTTTGATCTTGACCAGATCTTGTGCTTGAAAGATATACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACGGTTTTGATCTTGACCAGATCTTGTGCTTGAAAGATATACTTTA  600

seq1  AAGATACCACCTTAAAATTGTGTTGCAAAGGTCAGATCTGTAGAGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCACCTTAAAATTGTGTTGCAAAGGTCAGATCTGTAGAGGAAAA  650

seq1  GGGTTTAGTTACTGTGCAGTCTGCTATTGCAAGGTGCTTGTATCATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGTTACTGTGCAGTCTGCTATTGCAAGGTGCTTGTATCATATTC  700

seq1  AGGAAGGTTAGTGTGTTAGAATTAGTGTTCTTCCATGTGTTGTCACACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTAGTGTGTTAGAATTAGTGTTCTTCCATGTGTTGTCACACGA  750

seq1  TGTTTGCATTCTGTCGGCTAGGATGCTGATAAGGCTCTTTTCTTTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATTCTGTCGGCTAGGATGCTGATAAGGCTCTTTTCTTTGGAGG  800

seq1  ACATACTTGCTTTTTCATTTCTGTCCCATTTGAGAATGCTTATGAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTGCTTTTTCATTTCTGTCCCATTTGAGAATGCTTATGAGAGGA  850

seq1  AGGAAGGATGGATCAAGAGATGCTCTCTGAAATGTCTTTCCTCTGTATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGATGGATCAAGAGATGCTCTCTGAAATGTCTTTCCTCTGTATCC  900

seq1  TTTACCCTCATGTCTTCCTGTTTACCATCAATTCTGAAGAAAGAAATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTCATGTCTTCCTGTTTACCATCAATTCTGAAGAAAGAAATACA  950

seq1  ACTCAGAAGTGAGCTGTGTGATCC-TGGAGACCCCACTGAACTGGGAGTT  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCAGAAGTGAGCTGTGTGATCCTTGGAGACCCCACTGAACTGGGAGTT  1000

seq1  GAGT-GTGGAGTGTAGCTGTATCCTTCTCCCT-CTCTTTTGAAAG-AGAA  1046
      |||| ||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GAGTGGTGGAGTGTAGCTGTATCCTTCTCCCTCCTCTTTTGAAAGAAGAA  1050

seq1  ACAGAAA-GACAATC-TGTCCAGGAAC-TTCTGATGGGCAAGGACGGACG  1093
      ||||||| ||||||| ||||||||||| ||||||||||| | ||||||||
seq2  ACAGAAATGACAATCTTGTCCAGGAACTTTCTGATGGGCCAAGACGGACG  1100

seq1  -ATATGGGTTTTTAATTTTCTAAGTGAAGCAACAGC-TATAGCTTTGGTG  1141
       |||||||||||  | || ||| ||| ||| ||||| ||||||||||| |
seq2  AATATGGGTTTT--AATTCCTAGGTG-AGC-ACAGCTTATAGCTTTGGGG  1146

seq1  TACT  1145
      ||||
seq2  TACT  1150

seq1: chr5_32248504_32248884
seq2: B6Ng01-324I13.g_63_443 (reverse)

seq1  CTCCCTCCCTCCCTTTCTCCCTCCCTCTCTCCCTTTCAGATATATAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTTTCTCCCTCCCTCTCTCCCTTTCAGATATATAGGCA  50

seq1  TATGCCATGGATGATTGGCTCCTGCCTACAAGAGTTCTCCTTCTGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATGGATGATTGGCTCCTGCCTACAAGAGTTCTCCTTCTGTGAGG  100

seq1  GGATATTGCAGGGTCTCTGTGGACACATTTCCAAGACACCAAGAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGCAGGGTCTCTGTGGACACATTTCCAAGACACCAAGAAAAGCT  150

seq1  GGGTGGCTCTGTTCCATGGAGTGGGGCTGCTCTCCAGAGACTCTTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCTGTTCCATGGAGTGGGGCTGCTCTCCAGAGACTCTTGGGAT  200

seq1  TTCTGTTAAATGTCTGCCAGCATCTCAGCTTCACAGCACTGCTGTGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAAATGTCTGCCAGCATCTCAGCTTCACAGCACTGCTGTGTTGG  250

seq1  AATGTCACTAGGATGCCCTGCAGAGGGAGGAACTATAGAGCAGAAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACTAGGATGCCCTGCAGAGGGAGGAACTATAGAGCAGAAGTCTC  300

seq1  CATCTCCAGAGCCGTTGATTTGGCTGTAAATGGTAGCGGCAGAGTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGAGCCGTTGATTTGGCTGTAAATGGTAGCGGCAGAGTCAGAA  350

seq1  GCAGAGGATTTGGAGCTTGTCCATGGAATTC  381
      |||||||||||||||||||||||||||||||
seq2  GCAGAGGATTTGGAGCTTGTCCATGGAATTC  381