BAC Information

Click to search

BAC

Clone NameB6Ng01-324M09
Chromosome5 (Build37)
Map Location 14,098,404 - 14,254,611
singlet/doubletdoublet
Overlap geneSema3e
Upstream geneLOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324M09.bB6Ng01-324M09.g
ACCGA113003GA113004
length1,0861,189
definitionB6Ng01-324M09.b B6Ng01-324M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,098,404 - 14,099,481)(14,253,422 - 14,254,611)
sequence
ggaattcttgacatcttactctcatcacataacctctcattttgggagcc
acctttattttctgaatgtttaatgtagatttaataaaaaatgtaggttt
gaaattttccttaaatttaaaaaatatactgcttgatgggacttttattc
ctgtgttaaatacatctatctatctaccctgtgtatattataaatggccg
cctctttcccagcttcttattaataagatacacttggccaatcatattta
aatgactaaccggggctatcacctgaagcatgtgttgctggacataattt
cagaacatatagagatataataaagtttccaattttaatatgataacagc
attcatttcagtagccctcacaaggcctaggacaggttcttgaatgcagc
cttggaagcaaatgtaaacggtcttaatcaccatgtaaagatgtggtcgc
agccctccttagccctccttatctaaagtccaacaatgttgaggggtact
caaaaggtggaaacatttagaatatctgccggcaaataattaactttttg
gagaaaagaaagtagatttttaaaaaaatctagtgaatttataaatacca
tagtgggttcctgtaggaaatgatcagtcatcaaaacaatctgtaagaga
acaactgaaaaccacttctgggtagatacaatatgtataaagaacatagg
ccaatgttatgagctgcttaatgagactcaagacttgttacaaataggga
agaagtcataaattttaatagggtcatatttattttttttttctttccat
tttttattagatattcagctcatttacatttccaatgctatacccaaaag
tcccccatacccacccaccccccactccctacccgcccactccccctttt
tggccctggcgttcccctgttctggggcatataaagtttgtgtgtccaat
gggcctctctttccagtgatggccgactaggccatcttctggagggtcat
atttaaataaggaagggtcaatggtccataatttcctgagcctcacagga
ggttcagtggtggagtcctagcatgccacagaaaca
gaattccaggacagctaggactatacagagaaaccctgtctcaaaaaaac
aaaaacaaaacaacaacaaaaaaaacttctccatagatttttctgctctc
ttgtaatattgcagacatatcctttccttaggaactagtgatgtggtttt
ggttttaattccccaattttccctcccccctttgtgttcataaactacag
tattttaaaagttttgaatactcccttttgccaactactattgctggaga
acaatggcacacagtggattctacagtcaataacgtgtggactttcagag
gatgtcaacattctctttattcatactagttatatgttttagaaattctg
gactttaaaatttccaaaattttaaaatttcaaaattgtggaatatttat
gtagtcactaattttagacagaaaaagaaatccattagaagttctcaaca
ctttatattcttaattatatagcatactgagatagctgacataatagtta
aatttaagtctgaatacgtattcataattgttcttattacaatccacttg
cgttactcttaccgaactgaaaagcctcataaaaatcatattttagaacg
gaagctgctaactctttaaaatacagagaagaaaaatctcaagaaataaa
cattctgaaaaatataaattttgattatattcataagacaaagataatga
ttctctaaagatgtcagtagtaaaacgaatccaagaagtaaatataaaat
aggaagatttcatttctgagaaagaatgctttgataatttctttgcgggt
aaagcacactttcagagtgtcttgtctcagggtaggactggaaaggtact
ttcttctatttcaaagctcaaatgcagttaacatcttcgttgtgttgtga
agtaatgaattaaccagaagcatgctatttccatattaaattattatata
aaattattttttaattgagtctctgaatagtgaactagatgtatctacta
cattttgttttcaagtcattgcaggaaaattatggaaacagcattgagag
atgcaatgccttcttgttacaccaaggagggaagcacagacctttttaaa
cagaattcttacttcatgttgcaactatttaaaaatattcttctgaagct
atcttcaatcttccacactggaaggtgaaaattaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14098404_14099481
seq2: B6Ng01-324M09.b_49_1133

seq1  GAATTCTTGACATCTTACTCTCATCACATAACCTCTCATTTTGGGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACATCTTACTCTCATCACATAACCTCTCATTTTGGGAGCCA  50

seq1  CCTTTATTTTCTGAATGTTTAATGTAGATTTAATAAAAAATGTAGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTTCTGAATGTTTAATGTAGATTTAATAAAAAATGTAGGTTTG  100

seq1  AAATTTTCCTTAAATTTAAAAAATATACTGCTTGATGGGACTTTTATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTTAAATTTAAAAAATATACTGCTTGATGGGACTTTTATTCC  150

seq1  TGTGTTAAATACATCTATCTATCTACCCTGTGTATATTATAAATGGCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAATACATCTATCTATCTACCCTGTGTATATTATAAATGGCCGC  200

seq1  CTCTTTCCCAGCTTCTTATTAATAAGATACACTTGGCCAATCATATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCAGCTTCTTATTAATAAGATACACTTGGCCAATCATATTTAA  250

seq1  ATGACTAACCGGGGCTATCACCTGAAGCATGTGTTGCTGGACATAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAACCGGGGCTATCACCTGAAGCATGTGTTGCTGGACATAATTTC  300

seq1  AGAACATATAGAGATATAATAAAGTTTCCAATTTTAATATGATAACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATATAGAGATATAATAAAGTTTCCAATTTTAATATGATAACAGCA  350

seq1  TTCATTTCAGTAGCCCTCACAAGGCCTAGGACAGGTTCTTGAATGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAGTAGCCCTCACAAGGCCTAGGACAGGTTCTTGAATGCAGCC  400

seq1  TTGGAAGCAAATGTAAACGGTCTTAATCACCATGTAAAGATGTGGTCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAAATGTAAACGGTCTTAATCACCATGTAAAGATGTGGTCGCA  450

seq1  GCCCTCCTTAGCCCTCCTTATCTAAAGTCCAACAATGTTGAGGGGTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTTAGCCCTCCTTATCTAAAGTCCAACAATGTTGAGGGGTACTC  500

seq1  AAAAGGTGGAAACATTTAGAATATCTGCCGGCAAATAATTAACTTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGGAAACATTTAGAATATCTGCCGGCAAATAATTAACTTTTTGG  550

seq1  AGAAAAGAAAGTAGATTTTTAAAAAAATCTAGTGAATTTATAAATACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAGTAGATTTTTAAAAAAATCTAGTGAATTTATAAATACCAT  600

seq1  AGTGGGTTCCTGTAGGAAATGATCAGTCATCAAAACAATCTGTAAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTCCTGTAGGAAATGATCAGTCATCAAAACAATCTGTAAGAGAA  650

seq1  CAACTGAAAACCACTTCTGGGTAGATACAATATGTATAAAGAACATAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAAACCACTTCTGGGTAGATACAATATGTATAAAGAACATAGGC  700

seq1  CAATGTTATGAGCTGCTTAATGAGACTCAAGACTTGTTACAAATAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTATGAGCTGCTTAATGAGACTCAAGACTTGTTACAAATAGGGAA  750

seq1  GAAGTCATAAATTTTAATAGGGTCATATTTA-TTTTTTTTTCTTTCCATT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAGTCATAAATTTTAATAGGGTCATATTTATTTTTTTTTTCTTTCCATT  800

seq1  TTTTATTAGATATTCAGCTCATTTACATTTCCAATGCTATA-CCAAAAGT  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTATTAGATATTCAGCTCATTTACATTTCCAATGCTATACCCAAAAGT  850

seq1  CCCCCATACCCACCCA-CCCCCACTCCCCTACCCGCCCACTCCCCCTTTT  897
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CCCCCATACCCACCCACCCCCCACT-CCCTACCCGCCCACTCCCCCTTTT  899

seq1  TGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAAT  949

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCT-GAGGGTCAT  996
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGGAGGGTCAT  999

seq1  ATTTAAAATAGGAAAGGGCAA-AGTTCAT-ATTTCCTGAG-CTCACAGAG  1043
      |||||||  ||||| || |||  || ||| |||||||||| |||||||  
seq2  ATTTAAATAAGGAAGGGTCAATGGTCCATAATTTCCTGAGCCTCACAGGA  1049

seq1  GGTCAATTGGTGGAG-CCTAGCAATGCACAGAAACA  1078
      |||  | |||||||| |||||||   ||||||||||
seq2  GGTTCAGTGGTGGAGTCCTAGCATGCCACAGAAACA  1085

seq1: chr5_14253422_14254611
seq2: B6Ng01-324M09.g_62_1250 (reverse)

seq1  TCTTTTAAATTTCAC--TTCAGTGTGGAAGGATGGAAGATAGCCTCTCAG  48
      |||||||| ||||||  | |||||||||| ||| |||||||||   ||||
seq2  TCTTTTAATTTTCACCTTCCAGTGTGGAA-GATTGAAGATAGC--TTCAG  47

seq1  AAAGATATTTTTAAATAGTTTCAAACCATGAAAGTAGAATTCTG-TTAAA  97
      ||  |||||||||||||||| |||  ||||||   ||||||||| |||||
seq2  AAGAATATTTTTAAATAGTTGCAA--CATGAAGTAAGAATTCTGTTTAAA  95

seq1  AAGGTCTGTGCTTCCCTC--TTGTGGTACAAGAAGGCATTGCATCTCTCA  145
      ||||||||||||||||||  | |||  |||||||||||||||||||||||
seq2  AAGGTCTGTGCTTCCCTCCTTGGTGTAACAAGAAGGCATTGCATCTCTCA  145

seq1  ATGCTGTTTCCATAATTTTCCTGCAATGACTTGAAAACAAAATGTAGTAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTTCCATAATTTTCCTGCAATGACTTGAAAACAAAATGTAGTAG  195

seq1  ATACATCTAGTTCACTATTCAGAAGACTCAATTAAAAAATAATTTTATAT  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACATCTAGTTCACTATTCAG-AGACTCAATTAAAAAATAATTTTATAT  244

seq1  AATAATTTAATATGGAAATAGCATGCTTCTGGTTAATTCATTACTTCACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAATATGGAAATAGCATGCTTCTGGTTAATTCATTACTTCACA  294

seq1  ACACAACGAAGATGTTAACTGCATTTGAGCTTTGAAATAGAAGAAAGTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACGAAGATGTTAACTGCATTTGAGCTTTGAAATAGAAGAAAGTAC  344

seq1  CTTTCCAGTCCTACCCTGAGACAAGACACTCTGAAAGTGTGCTTTACCCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTCCTACCCTGAGACAAGACACTCTGAAAGTGTGCTTTACCCG  394

seq1  CAAAGAAATTATCAAAGCATTCTTTCTCAGAAATGAAATCTTCCTATTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATTATCAAAGCATTCTTTCTCAGAAATGAAATCTTCCTATTTT  444

seq1  ATATTTACTTCTTGGATTCGTTTTACTACTGACATCTTTAGAGAATCATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTCTTGGATTCGTTTTACTACTGACATCTTTAGAGAATCATT  494

seq1  ATCTTTGTCTTATGAATATAATCAAAATTTATATTTTTCAGAATGTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTCTTATGAATATAATCAAAATTTATATTTTTCAGAATGTTTAT  544

seq1  TTCTTGAGATTTTTCTTCTCTGTATTTTAAAGAGTTAGCAGCTTCCGTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGATTTTTCTTCTCTGTATTTTAAAGAGTTAGCAGCTTCCGTTC  594

seq1  TAAAATATGATTTTTATGAGGCTTTTCAGTTCGGTAAGAGTAACGCAAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGATTTTTATGAGGCTTTTCAGTTCGGTAAGAGTAACGCAAGT  644

seq1  GGATTGTAATAAGAACAATTATGAATACGTATTCAGACTTAAATTTAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAATAAGAACAATTATGAATACGTATTCAGACTTAAATTTAACT  694

seq1  ATTATGTCAGCTATCTCAGTATGCTATATAATTAAGAATATAAAGTGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCAGCTATCTCAGTATGCTATATAATTAAGAATATAAAGTGTTG  744

seq1  AGAACTTCTAATGGATTTCTTTTTCTGTCTAAAATTAGTGACTACATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTAATGGATTTCTTTTTCTGTCTAAAATTAGTGACTACATAAA  794

seq1  TATTCCACAATTTTGAAATTTTAAAATTTTGGAAATTTTAAAGTCCAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAATTTTGAAATTTTAAAATTTTGGAAATTTTAAAGTCCAGAA  844

seq1  TTTCTAAAACATATAACTAGTATGAATAAAGAGAATGTTGACATCCTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAACATATAACTAGTATGAATAAAGAGAATGTTGACATCCTCTG  894

seq1  AAAGTCCACACGTTATTGACTGTAGAATCCACTGTGTGCCATTGTTCTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCACACGTTATTGACTGTAGAATCCACTGTGTGCCATTGTTCTCC  944

seq1  AGCAATAGTAGTTGGCAAAAGGGAGTATTCAAAACTTTTAAAATACTGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTAGTTGGCAAAAGGGAGTATTCAAAACTTTTAAAATACTGTA  994

seq1  GTTTATGAACACAAAGGGGGGAGGGAAAATTGGGGAATTAAAACCAAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAACACAAAGGGGGGAGGGAAAATTGGGGAATTAAAACCAAAAC  1044

seq1  CACATCACTAGTTCCTAAGGAAAGGATATGTCTGCAATATTACAAGAGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTAGTTCCTAAGGAAAGGATATGTCTGCAATATTACAAGAGAG  1094

seq1  CAGAAAAATCTATGGAGAAGTTTTTTTTGTTGTTGTTTTGTTTTTGTTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATCTATGGAGAAGTTTTTTTTGTTGTTGTTTTGTTTTTGTTTT  1144

seq1  TTTGAGACAGGGTTTCTCTGTATAGTCCTAGCTGTCCTGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTTTCTCTGTATAGTCCTAGCTGTCCTGGAATTC  1189