BAC Information

Click to search

BAC

Clone NameB6Ng01-325H18
Chromosome5 (Build37)
Map Location 147,394,164 - 147,552,235
singlet/doubletdoublet
Overlap geneGpr12, Usp12
Upstream geneLOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172
Downstream gene1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325H18.bB6Ng01-325H18.g
ACCGA113531GA113532
length1,0761,095
definitionB6Ng01-325H18.b B6Ng01-325H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,394,164 - 147,395,238)(147,551,144 - 147,552,235)
sequence
gaattcctagaaataaacacaagcccttccaaatgtaattatataaacta
ttttggttatatggcaaagctcctatcctgttagatacatacagaatgga
agatctaccttgattaaaaaaaaaaaagtatttccttcagaaaaagtatt
tccttctccagtttcctttaaaactttgatttattttcaagcctaggtta
aaaaatcccgagacttttgtataatttcatggccacatgaggtcccatta
caccctccaaacaaacaaacaagcaaacaaacaaacaaatcctaactccc
aaaccaaacaacagaatgctgagccgagaagtcgagttttgttttgtttt
ttttttaaaaaacactggtaagatgatttccactgtcaatacgtgtctaa
aagatgtcattgcttctgcttgtgagatccagtgcaaagaatttaaggaa
ggaaatcactggccgccctgggaggtgggagcgcttggtagaggcagcgt
cctatgaggagaaggctgctacacatcgctgggagaccgagctctctgag
acagcgaggaagggatgcacccacagcaaatgaggcagagggctttctgg
atctcttggtttctgaaagcgtaaatgacagggttgatgatggaattgta
ggtggcgggcaggagggtggcataggtatagatcgaagggtaggtgtaat
cggcgatcaaggaatagagggtgaaaggcatccagcaggcagcaaaggtc
cctaggatgagagccagggtcgagacccctttccgggtagtcacatagtg
cgatgtagccaggaagtggtgctgcagggctatctgatgggcgtgcctca
tcacaatcttacaaatctggatgtagagctgaagcatcagagcaaacatg
aagaggaaaggagatggagaggatggcagcgttgttcttagtgagaggtc
tgaccacgctgcaggtggactcgtccttcaagcagttccagcccatgact
gccagcagcccaggcagatggaggttccccagagcatcactagcatgact
ataggtaaaggtgacgtcctctcggg
gaattccaggacagccaggactacgtagaagggggcgggggagattgttc
cagtattaaagtcagagttcaacagggtcaaaaacataattcttttgcac
caacttgataattctttcaagctcacagtggatgttttctggattctgtc
ttcatctgtatgtttcaggatgaaggttaagaaactgcccctgatcctgg
ctctgcacctgaagaggtttaagtatatggaccagcttcaccggtacacg
aagctttcttatcgcgtggtctttcctttagagctccgtctgttcaacac
gtcaggagatgcgaccaaccctgacagaatgtatgacctggtcgccgttg
tggttcactgtggaaggtaactgcggctctggagagcttgtgactgcgct
tttcctgcatttgtgcctggtgccctcagagccctgaagagggcatcaga
tccactgggactggaattacagatagttgtgagccaccatttgggtgctg
ggacctgaacctagatcctctgcaggagtagccagtgttcttaactttgg
gtcatctctccagcaccccacatctttttttttaaagacagaatctctgt
tgtgaagcccagggtggcctcagcctcctccgtgctggaaacccaggtct
gtggtgctcccacacttggctggactccagtgttcttcatctttctcaag
atcggtttgttttgaaattagcttttgaaatacatacgttatcacccctt
catttaaacctttaatactttagctttatgccttcattttcattcttgtc
tgactctgagtctaagggcccgatatcgcagcttatagaacttggctgtc
atctgttggcttcctttcctttttggttttggtgttgaaatgatgctgcc
tgaatagattttgcaggacagactggtcccgagtgttgagagtgtaattt
ttcatcagtgactatgagaagcgtttgagtgctggtgatgtgacacgcac
agttcagtgctctgactgtcccgctggtgcgcgtttcgccatccccggca
gcagattcatggacaagcccactctcgaattcatcagggcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147394164_147395238
seq2: B6Ng01-325H18.b_43_1117

seq1  GAATTCCTAGAAATAAACACAAGCCCTTCCAAATGTAATTATATAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAAATAAACACAAGCCCTTCCAAATGTAATTATATAAACTA  50

seq1  TTTTGGTTATATGGCAAAGCTCCTATCCTGTTAGATACATACAGAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTATATGGCAAAGCTCCTATCCTGTTAGATACATACAGAATGGA  100

seq1  AGATCTACCTTGATTAAAAAAAAAAAAGTATTTCCTTCAGAAAAAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTACCTTGATTAAAAAAAAAAAAGTATTTCCTTCAGAAAAAGTATT  150

seq1  TCCTTCTCCAGTTTCCTTTAAAACTTTGATTTATTTTCAAGCCTAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCAGTTTCCTTTAAAACTTTGATTTATTTTCAAGCCTAGGTTA  200

seq1  AAAAATCCCGAGACTTTTGTATAATTTCATGGCCACATGAGGTCCCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCGAGACTTTTGTATAATTTCATGGCCACATGAGGTCCCATTA  250

seq1  CACCCTCCAAACAAACAAACAAGCAAACAAACAAACAAATCCTAACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCAAACAAACAAACAAGCAAACAAACAAACAAATCCTAACTCCC  300

seq1  AAACCAAACAACAGAATGCTGAGCCGAGAAGTCGAGTTTTGTTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACAACAGAATGCTGAGCCGAGAAGTCGAGTTTTGTTTTGTTTT  350

seq1  TTTTTTAAAAAACACTGGTAAGATGATTTCCACTGTCAATACGTGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAACACTGGTAAGATGATTTCCACTGTCAATACGTGTCTAA  400

seq1  AAGATGTCATTGCTTCTGCTTGTGAGATCCAGTGCAAAGAATTTAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCATTGCTTCTGCTTGTGAGATCCAGTGCAAAGAATTTAAGGAA  450

seq1  GGAAATCACTGGCCGCCCTGGGAGGTGGGAGCGCTTGGTAGAGGCAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACTGGCCGCCCTGGGAGGTGGGAGCGCTTGGTAGAGGCAGCGT  500

seq1  CCTATGAGGAGAAGGCTGCTACACATCGCTGGGAGACCGAGCTCTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGGAGAAGGCTGCTACACATCGCTGGGAGACCGAGCTCTCTGAG  550

seq1  ACAGCGAGGAAGGGATGCACCCACAGCAAATGAGGCAGAGGGCTTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGAGGAAGGGATGCACCCACAGCAAATGAGGCAGAGGGCTTTCTGG  600

seq1  ATCTCTTGGTTTCTGAAAGCGTAAATGACAGGGTTGATGATGGAATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGGTTTCTGAAAGCGTAAATGACAGGGTTGATGATGGAATTGTA  650

seq1  GGTGGCGGGCAGGAGGGTGGCATAGGTATAGATCGAAGGGTAGGTGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGGGCAGGAGGGTGGCATAGGTATAGATCGAAGGGTAGGTGTAAT  700

seq1  CGGCGATCAAGGAATAGAGGGTGAAAGGCATCCAGCAGGCAGCAAAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGATCAAGGAATAGAGGGTGAAAGGCATCCAGCAGGCAGCAAAGGTC  750

seq1  CCTAGGATGAGAGCCAGGGTCGAGACCCCTTTCCGGGTAGTCACATAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATGAGAGCCAGGGTCGAGACCCCTTTCCGGGTAGTCACATAGTG  800

seq1  CGATGTAGCCAGGAAGTGGTGCTGCAGGGCTATCTGATGGGCGTGCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGCCAGGAAGTGGTGCTGCAGGGCTATCTGATGGGCGTGCCTCA  850

seq1  TCACAATCTTACAAATCTGGATGTAGAGCTGAAGCATCAGAGCAAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCTTACAAATCTGGATGTAGAGCTGAAGCATCAGAGCAAACATG  900

seq1  AAGAGG-AAGGAGATGGAGAGGATGGCAGCGTTGTTCTTAGTGAGAGGTC  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAGGAGATGGAGAGGATGGCAGCGTTGTTCTTAGTGAGAGGTC  950

seq1  TGACCACGCTGCAGGTGGACTCGTCCCTCAAGCAGTTCCAGCCCATGACG  999
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TGACCACGCTGCAGGTGGACTCGTCCTTCAAGCAGTTCCAGCCCATGACT  1000

seq1  GGCAGCAGCCCCAGGCAGATGGAGGTTCCCCAGAGCATCACTAGCATGAC  1049
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAG-CCCAGGCAGATGGAGGTTCCCCAGAGCATCACTAGCATGAC  1049

seq1  -ATAGGTAAAGGTGACGGTCCTCTCGG  1075
       ||||||||||||||| ||||||||||
seq2  TATAGGTAAAGGTGAC-GTCCTCTCGG  1075

seq1: chr5_147551144_147552235
seq2: B6Ng01-325H18.g_64_1158 (reverse)

seq1  CACATGCCCTG-TGGATTC--GAGTGGGGCTGTCCATGAATCTGGCTGGC  47
      ||||||||||| || ||||  |||||||  ||||||||||||| ||| ||
seq2  CACATGCCCTGATGAATTCGAGAGTGGGCTTGTCCATGAATCT-GCT-GC  48

seq1  TGGGGATGGCG-AACGCGCA-CAGCGGGACAGTCAGAGCACTGGACTGTT  95
       |||||||||| |||||||| |||||||||||||||||||||| |||| |
seq2  CGGGGATGGCGAAACGCGCACCAGCGGGACAGTCAGAGCACTGAACTG-T  97

seq1  GCGTGTCACATCCACCAGCACTCAAACGCTTCTCATAGTCACTGATGAGA  145
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  GCGTGTCACAT-CACCAGCACTCAAACGCTTCTCATAGTCACTGATGAAA  146

seq1  A--TACACTCTC-ACACTCGGGACCAGTCTGTCCTGCAAAATCTATTCAG  192
      |  ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTACACTCTCAACACTCGGGACCAGTCTGTCCTGCAAAATCTATTCAG  196

seq1  GCAGCATCATTTCAACACCAAAACCAAAAAAGGAAAGGAAGCCAACAGAT  242
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGCATCATTTCAACACCAAAACC-AAAAAGGAAAGGAAGCCAACAGAT  245

seq1  GACAGCCAAGTTCTATAAGCTGCGATATCGGGCCCTTAGACTCAGAGTCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAAGTTCTATAAGCTGCGATATCGGGCCCTTAGACTCAGAGTCA  295

seq1  GACAAGAATGAAAATGAAGGCATAAAGCTAAAGTATTAAAGGTTTAAATG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAATGAAAATGAAGGCATAAAGCTAAAGTATTAAAGGTTTAAATG  345

seq1  AAGGGGTGATAACGTATGTATTTCAAAAGCTAATTTCAAAACAAACCGAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTGATAACGTATGTATTTCAAAAGCTAATTTCAAAACAAACCGAT  395

seq1  CTTGAGAAAGATGAAGAACACTGGAGTCCAGCCAAGTGTGGGAGCACCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAGATGAAGAACACTGGAGTCCAGCCAAGTGTGGGAGCACCAC  445

seq1  AGACCTGGGTTTCCAGCACGGAGGAGGCTGAGGCCACCCTGGGCTTCACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGGTTTCCAGCACGGAGGAGGCTGAGGCCACCCTGGGCTTCACA  495

seq1  ACAGAGATTCTGTCTTTAAAAAAAAAGATGTGGGGTGCTGGAGAGATGAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTCTGTCTTTAAAAAAAAAGATGTGGGGTGCTGGAGAGATGAC  545

seq1  CCAAAGTTAAGAACACTGGCTACTCCTGCAGAGGATCTAGGTTCAGGTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTAAGAACACTGGCTACTCCTGCAGAGGATCTAGGTTCAGGTCC  595

seq1  CAGCACCCAAATGGTGGCTCACAACTATCTGTAATTCCAGTCCCAGTGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCAAATGGTGGCTCACAACTATCTGTAATTCCAGTCCCAGTGGA  645

seq1  TCTGATGCCCTCTTCAGGGCTCTGAGGGCACCAGGCACAAATGCAGGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCTTCAGGGCTCTGAGGGCACCAGGCACAAATGCAGGAAA  695

seq1  AGCGCAGTCACAAGCTCTCCAGAGCCGCAGTTACCTTCCACAGTGAACCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGTCACAAGCTCTCCAGAGCCGCAGTTACCTTCCACAGTGAACCA  745

seq1  CAACGGCGACCAGGTCATACATTCTGTCAGGGTTGGTCGCATCTCCTGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCGACCAGGTCATACATTCTGTCAGGGTTGGTCGCATCTCCTGAC  795

seq1  GTGTTGAACAGACGGAGCTCTAAAGGAAAGACCACGCGATAAGAAAGCTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAACAGACGGAGCTCTAAAGGAAAGACCACGCGATAAGAAAGCTT  845

seq1  CGTGTACCGGTGAAGCTGGTCCATATACTTAAACCTCTTCAGGTGCAGAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACCGGTGAAGCTGGTCCATATACTTAAACCTCTTCAGGTGCAGAG  895

seq1  CCAGGATCAGGGGCAGTTTCTTAACCTTCATCCTGAAACATACAGATGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCAGGGGCAGTTTCTTAACCTTCATCCTGAAACATACAGATGAA  945

seq1  GACAGAATCCAGAAAACATCCACTGTGAGCTTGAAAGAATTATCAAGTTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATCCAGAAAACATCCACTGTGAGCTTGAAAGAATTATCAAGTTG  995

seq1  GTGCAAAAGAATTATGTTTTTGACCCTGTTGAACTCTGACTTTAATACTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAAGAATTATGTTTTTGACCCTGTTGAACTCTGACTTTAATACTG  1045

seq1  GAACAATCTCCCCCGCCCCCTTCTACGTAGTCCTGGCTGTCCTGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCTCCCCCGCCCCCTTCTACGTAGTCCTGGCTGTCCTGGAATTC  1095