BAC Information

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BAC

Clone NameB6Ng01-325H19
Chromosome5 (Build37)
Map Location 6,443,962 - 6,623,630
singlet/doubletdoublet
Overlap genenone
Upstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325H19.bB6Ng01-325H19.g
ACCGA113533GA113534
length1,0151,101
definitionB6Ng01-325H19.b B6Ng01-325H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,443,962 - 6,444,771)(6,622,557 - 6,623,630)
sequence
gaattcaactgactttaattgaactgtgttgaactgaattgaactctcac
cctcactgctttttaagtagcctctcttttctatctgttctccagagagt
tgggtgtatcctatctcttattctttctattaaatgtgtgagtctcactt
tgtccctcaattgtttgggattaaaggtggtgcatgcctacatttcagtc
agatgtatttggacatgatcccttgacagagaaggcatgttactgcatta
aaatttctctatgatatcctatctgtaaatcctcttttggagatgttgct
tgttcctgtttttgtttttgtttttgttttcaagaccttcaggttcatca
ttacatcattaatttgagaccttttaattttttcttaggtagaagtatac
actttcttcttagtggtaccttcattgtgtcccacagatttccgaaaaat
gtattttcattttcaattccagaattttaagtttccttctttatttcttt
attggctcaattgtcattcattttagcctctatgaatttgtgtgtttttc
tgaagtttatattacagttgatagctaacttcattccaatgtgatcagat
acaacagtggatgctgtattttcctatacattgtgaatgtcctatgtatg
tatgcaaacatgtatgcttgtagaggctagaggtcaatgtcttatgtctt
acttactcacaccctacctcatcttttgagacaagggctttcactgaaat
tctaatctctctacttgaggtagaccagctggccactgacctctgattat
cctattattatctgcctctttagtgctaggattataagtgagtattagtt
tgtcttgaaaccaaagccagtttggcttttatgtaggttcataggattaa
acacaggttctcatgcttgtgtggaaaacattttatcaactagctatctc
cccatcatacaaggccatatctttcttaaagctaccaaagaaaaactttc
tcatgccctttgtag

gaattccataaaactgtatttcagtttcaacaatgttccacatcttttat
ctacacaaacctcaggtgactctagctttgtctcatgtaggcagaaaact
acggtgatcaggaggctcttcctgtctcctccttccaaataaaagtattg
tgttacatgtgagccagtctcagtcagtggatgttgtgtccggccagcag
atcacagcctgggttctagcctggaaaggcattttggaaacctggaagag
aagaggggctgggctgagcgagataaggaaggaaccaagacaaaggtctc
tgctcaaggttcaatttttactattcccgcactccgttataaaggaaggg
ggagggacccaattcccgccaattaatcttggggtccaatagcagggtga
ccacgtgtacggctccaaacagcaaagcggcaggttccagcagtgggcgt
ggcagaacaattgagccgacaagctccatccaggtgtaaacagtggaacc
attaaggctgggggaggggaggctacaagtggacattatgtaataatctg
gcaaatttaaaatccactctgagttggtttcttgtttttaattttgaact
ttccttttgtttccctttgaggtaaataggaaacttaaggtgtgtggtct
gtatatttgattttctcaatctctctagtgcaaattgcatgtctttcatt
tgccctgaaaacagatctaaactcctaattgacatatgaggttttagttt
ttgactctgaaaagaactcattatttttaaattgttttcaacatggtttt
tctttaagtagatatcagaaaaacctatttttttcaagattcatttattt
gcattaaaagtttgtgtatgtatgtgcatgagttttatgtttgccatatg
catgtaggtgcatctggaagcccaaaggatgatgatccccttgaactaga
attacaggcaaccggtgcttgatgtggggtgcttggctacgaatcctgca
ttccttgttggaatggaaagtgaattgtcttttattttccttacccatat
tcccaggcctaaaaaattcttttattttcctgtatcttattaaaatttta
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6443962_6444771
seq2: B6Ng01-325H19.b_40_849

seq1  GAATTCAACTGACTTTAATTGAACTGTGTTGAACTGAATTGAACTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGACTTTAATTGAACTGTGTTGAACTGAATTGAACTCTCAC  50

seq1  CCTCACTGCTTTTTAAGTAGCCTCTCTTTTCTATCTGTTCTCCAGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTTTTTAAGTAGCCTCTCTTTTCTATCTGTTCTCCAGAGAGT  100

seq1  TGGGTGTATCCTATCTCTTATTCTTTCTATTAAATGTGTGAGTCTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTATCCTATCTCTTATTCTTTCTATTAAATGTGTGAGTCTCACTT  150

seq1  TGTCCCTCAATTGTTTGGGATTAAAGGTGGTGCATGCCTACATTTCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAATTGTTTGGGATTAAAGGTGGTGCATGCCTACATTTCAGTC  200

seq1  AGATGTATTTGGACATGATCCCTTGACAGAGAAGGCATGTTACTGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATTTGGACATGATCCCTTGACAGAGAAGGCATGTTACTGCATTA  250

seq1  AAATTTCTCTATGATATCCTATCTGTAAATCCTCTTTTGGAGATGTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCTATGATATCCTATCTGTAAATCCTCTTTTGGAGATGTTGCT  300

seq1  TGTTCCTGTTTTTGTTTTTGTTTTTGTTTTCAAGACCTTCAGGTTCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGTTTTTGTTTTTGTTTTTGTTTTCAAGACCTTCAGGTTCATCA  350

seq1  TTACATCATTAATTTGAGACCTTTTAATTTTTTCTTAGGTAGAAGTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATTAATTTGAGACCTTTTAATTTTTTCTTAGGTAGAAGTATAC  400

seq1  ACTTTCTTCTTAGTGGTACCTTCATTGTGTCCCACAGATTTCCGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCTTAGTGGTACCTTCATTGTGTCCCACAGATTTCCGAAAAAT  450

seq1  GTATTTTCATTTTCAATTCCAGAATTTTAAGTTTCCTTCTTTATTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCATTTTCAATTCCAGAATTTTAAGTTTCCTTCTTTATTTCTTT  500

seq1  ATTGGCTCAATTGTCATTCATTTTAGCCTCTATGAATTTGTGTGTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTCAATTGTCATTCATTTTAGCCTCTATGAATTTGTGTGTTTTTC  550

seq1  TGAAGTTTATATTACAGTTGATAGCTAACTTCATTCCAATGTGATCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTATATTACAGTTGATAGCTAACTTCATTCCAATGTGATCAGAT  600

seq1  ACAACAGTGGATGCTGTATTTTCCTATACATTGTGAATGTCCTATGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGGATGCTGTATTTTCCTATACATTGTGAATGTCCTATGTATG  650

seq1  TATGCAAACATGTATGCTTGTAGAGGCTAGAGGTCAATGTCTTATGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAACATGTATGCTTGTAGAGGCTAGAGGTCAATGTCTTATGTCTT  700

seq1  ACTTACTCACACCCTACCTCATCTTTTGAGACAAGGGCTTTCACTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCACACCCTACCTCATCTTTTGAGACAAGGGCTTTCACTGAAAT  750

seq1  TCTAATCTCTCTACTTGAGGTAGACCAGCTGGCCACTGACCTCTGATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTCTCTACTTGAGGTAGACCAGCTGGCCACTGACCTCTGATTAT  800

seq1  CCTATTATTA  810
      ||||||||||
seq2  CCTATTATTA  810


seq1: chr5_6622557_6623630
seq2: B6Ng01-325H19.g_67_1167 (reverse)

seq1  ATAAAA-TTTAATAAGATACAG--AAAT-AAAGAATTTTTTAGGC--TGG  44
      |||||| |||||||||||||||  |||| ||||||||||||||||   ||
seq2  ATAAAATTTTAATAAGATACAGGAAAATAAAAGAATTTTTTAGGCCTGGG  50

seq1  ATAATGGTTAAG--AAATAAAGGAC-ACTCAC-TTCCCTTCC-ACA--GG  87
      |  |||| ||||  ||||||| ||| | |||| |||| |||| |||  | 
seq2  AATATGGGTAAGGAAAATAAAAGACAATTCACTTTCCATTCCAACAAGGA  100

seq1  ATGCA-GATTCGGTAGCC-AGCA-CCCACATC-AGCACC-GCTGCCTGTA  132
      ||||| ||||| |||||| |||| |||||||| |||||| | ||||||||
seq2  ATGCAGGATTC-GTAGCCAAGCACCCCACATCAAGCACCGGTTGCCTGTA  149

seq1  ATTCTAGTTTCAGGAGATCATCATCCTTTGGGC-TCCAGATGCACCTACA  181
      |||||||||  ||| |||||||||||||||||| ||||||||||||||||
seq2  ATTCTAGTTCAAGGGGATCATCATCCTTTGGGCTTCCAGATGCACCTACA  199

seq1  TGCATATGGCAAACAT-AAACTCATGCACATACATACACAAACTTTTAAT  230
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCATATGGCAAACATAAAACTCATGCACATACATACACAAACTTTTAAT  249

seq1  GCAAATAAATGAATCTTG--AAAAATAGGTTTTTCTGATATCTACTTAA-  277
      ||||||||||||||||||  ||||||||||||||||||||||||||||| 
seq2  GCAAATAAATGAATCTTGAAAAAAATAGGTTTTTCTGATATCTACTTAAA  299

seq1  -GAAAACCATGTTGAAAACAATTT-AAAATAATGAGTTCTTTTCAGAGTC  325
        |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAAAACCATGTTGAAAACAATTTAAAAATAATGAGTTCTTTTCAGAGTC  349

seq1  -AAAACT-AAACCTCATATGTCAATTAGGAGTTTAGATCTGTTTTCAGGG  373
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAACCTCATATGTCAATTAGGAGTTTAGATCTGTTTTCAGGG  399

seq1  CAAATG-AAGACATGCAATTTGCACTAGAGAGATTGAGAAAATCAAATAT  422
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGACATGCAATTTGCACTAGAGAGATTGAGAAAATCAAATAT  449

seq1  ACAGACCACACACCTTAAGTTTCCTATTTACCTCAAAGGGAAACAAAAGG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCACACACCTTAAGTTTCCTATTTACCTCAAAGGGAAACAAAAGG  499

seq1  AAAGTTCAAAATTAAAAACAAGAAACCAACTCAGAGTGGATTTTAAATTT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAAAATTAAAAACAAGAAACCAACTCAGAGTGGATTTTAAATTT  549

seq1  GCCAGATTATTACATAATGTCCACTTGTAGCCTCCCCTCCCCCAGCCTTA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTATTACATAATGTCCACTTGTAGCCTCCCCTCCCCCAGCCTTA  599

seq1  ATGGTTCCACTGTTTACACCTGGATGGAGCTTGTCGGCTCAATTGTTCTG  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCACTGTTTACACCTGGATGGAGCTTGTCGGCTCAATTGTTCTG  649

seq1  CCACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTTGGAGCCGTACACGT  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTTGGAGCCGTACACGT  699

seq1  GGTCACCCTGCTATTGGACCCCAAGATTAATTGGCGGGAATTGGGTCCCT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCCTGCTATTGGACCCCAAGATTAATTGGCGGGAATTGGGTCCCT  749

seq1  CCCCCTTCCTTTATAACGGAGTGCGGGAATAGTAAAAATTGAACCTTGAG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCTTTATAACGGAGTGCGGGAATAGTAAAAATTGAACCTTGAG  799

seq1  CAGAGACCTTTGTCTTGGTTCCTTCCTTATCTCGCTCAGCCCAGCCCCTC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCTTTGTCTTGGTTCCTTCCTTATCTCGCTCAGCCCAGCCCCTC  849

seq1  TTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGCTGTG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGCTGTG  899

seq1  ATCTGCTGGCCGGACACAACATCCACTGACTGAGACTGGCTCACATGTAA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGGCCGGACACAACATCCACTGACTGAGACTGGCTCACATGTAA  949

seq1  CACAATACTTTTATTTGGAAGGAGGAGACAGGAAGAGCCTCCTGATCACC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACTTTTATTTGGAAGGAGGAGACAGGAAGAGCCTCCTGATCACC  999

seq1  GTAGTTTTCTGCCTACATGAGACAAAGCTAGAGTCACCTGAGGTTTGTGT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTCTGCCTACATGAGACAAAGCTAGAGTCACCTGAGGTTTGTGT  1049

seq1  AGATAAAAGATGTGGAACATTGTTGAAACTGAAATACAGTTTTATGGAAT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGATGTGGAACATTGTTGAAACTGAAATACAGTTTTATGGAAT  1099

seq1  TC  1074
      ||
seq2  TC  1101


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