BAC Information

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BAC

Clone NameB6Ng01-325K13
Chromosome5 (Build37)
Map Location 78,725,880 - 78,824,464
singlet/doubletdoublet
Overlap geneLOC100039398
Upstream gene2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325K13.bB6Ng01-325K13.g
ACCGA113661GA113662
length582336
definitionB6Ng01-325K13.b B6Ng01-325K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,725,880 - 78,726,461)(78,824,129 - 78,824,464)
sequence
gaattccagaccactcaggccagaagagaaaggaaacagaaaccaaggcc
aggggtggtgtggtgtgagggacatccaaacccttcccacccaaaagaaa
ataaactcagaaatcagtatctaaacctataataacctcaaaccatagat
ggctaaaggtgagtctaagaacacaatcagtaagatcaaggataatatga
aaacagctatcttatttcagcaagccctgaatagcctaacagagctgaat
cacaataaaatgaccttaaatcaaaacttatgaatatgatagaggattct
aaataggaaatgaataaatctcttaaagaaatggaaaattcaaacaggta
aaagagatgaataaaaaatgtttaaaacttcaaaatggaaatagataaac
accttcacaaagtggctgaatataaaattaactaaaaaaatcagtaactc
tactttatacaaataataaatgggctgagaaagaaattacagaacagcac
ccttcacaatagccacaaataatataaaatatcttgatggtattctatct
aagcaagtgaagaacttcaagtttttaaaaat
agttttaccctgagtctctgggttatcaaagtctccagttcctagccata
ccagaaatttatttatttttctccttgtttcataaccttcaagttctttg
ttttctaatatctgctatttcatacattttaaataaaatataatcacacc
attttcctccacacagccccttaagtcacctccctcatatctgacatttc
tggttcttttagtctgtagtgcgtgaattatgttggaaagcattgttagc
ccatgttgctttatttcctttaaaatgtgtttctctctttctctctctct
ctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78725880_78726461
seq2: B6Ng01-325K13.b_45_626

seq1  GAATTCCAGACCACTCAGGCCAGAAGAGAAAGGAAACAGAAACCAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCACTCAGGCCAGAAGAGAAAGGAAACAGAAACCAAGGCC  50

seq1  AGGGGTGGTGTGGTGTGAGGGACATCCAAACCCTTCCCACCCAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGTGTGGTGTGAGGGACATCCAAACCCTTCCCACCCAAAAGAAA  100

seq1  ATAAACTCAGAAATCAGTATCTAAACCTATAATAACCTCAAACCATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCAGAAATCAGTATCTAAACCTATAATAACCTCAAACCATAGAT  150

seq1  GGCTAAAGGTGAGTCTAAGAACACAATCAGTAAGATCAAGGATAATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGTGAGTCTAAGAACACAATCAGTAAGATCAAGGATAATATGA  200

seq1  AAACAGCTATCTTATTTCAGCAAGCCCTGAATAGCCTAACAGAGCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTATCTTATTTCAGCAAGCCCTGAATAGCCTAACAGAGCTGAAT  250

seq1  CACAATAAAATGACCTTAAATCAAAACTTATGAATATGATAGAGGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAATGACCTTAAATCAAAACTTATGAATATGATAGAGGATTCT  300

seq1  AAATAGGAAATGAATAAATCTCTTAAAGAAATGGAAAATTCAAACAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAATGAATAAATCTCTTAAAGAAATGGAAAATTCAAACAGGTA  350

seq1  AAAGAGATGAATAAAAAATGTTTAAAACTTCAAAATGGAAATAGATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGAATAAAAAATGTTTAAAACTTCAAAATGGAAATAGATAAAC  400

seq1  ACCTTCACAAAGTGGCTGAATATAAAATTAACTAAAAAAATCAGTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAAAGTGGCTGAATATAAAATTAACTAAAAAAATCAGTAACTC  450

seq1  TACTTTATACAAATAATAAATGGGCTGAGAAAGAAATTACAGAACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATACAAATAATAAATGGGCTGAGAAAGAAATTACAGAACAGCAC  500

seq1  CCTTCACAATAGCCACAAATAATATAAAATATCTTGATGGTATTCTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAATAGCCACAAATAATATAAAATATCTTGATGGTATTCTATCT  550

seq1  AAGCAAGTGAAGAACTTCAAGTTTTTAAAAAT  582
      ||||||||||||||||||||||||||||||||
seq2  AAGCAAGTGAAGAACTTCAAGTTTTTAAAAAT  582

seq1: chr5_78824129_78824464
seq2: B6Ng01-325K13.g_74_409 (reverse)

seq1  ACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAAAG  50

seq1  AGAGAAACACATTTTAAAGGAAATAAAGCAACATGGGCTAACAATGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACACATTTTAAAGGAAATAAAGCAACATGGGCTAACAATGCTTT  100

seq1  CCAACATAATTCACGCACTACAGACTAAAAGAACCAGAAATGTCAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATAATTCACGCACTACAGACTAAAAGAACCAGAAATGTCAGATAT  150

seq1  GAGGGAGGTGACTTAAGGGGCTGTGTGGAGGAAAATGGTGTGATTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGTGACTTAAGGGGCTGTGTGGAGGAAAATGGTGTGATTATATT  200

seq1  TTATTTAAAATGTATGAAATAGCAGATATTAGAAAACAAAGAACTTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAATGTATGAAATAGCAGATATTAGAAAACAAAGAACTTGAAG  250

seq1  GTTATGAAACAAGGAGAAAAATAAATAAATTTCTGGTATGGCTAGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAACAAGGAGAAAAATAAATAAATTTCTGGTATGGCTAGGAACT  300

seq1  GGAGACTTTGATAACCCAGAGACTCAGGGTAAAACT  336
      ||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTTGATAACCCAGAGACTCAGGGTAAAACT  336