BAC Information

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BAC

Clone NameB6Ng01-325O06
Chromosome5 (Build37)
Map Location 14,252,596 - 14,253,817
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325O06.bB6Ng01-325O06.g
ACCGA113834GA113835
length1,1551,202
definitionB6Ng01-325O06.b B6Ng01-325O06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatta
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagtacccaggagctaaagggatctcaacccta
taggtggaacacattatgaactaccagtaccctgagctctgactctagct
gcatatgtatcaaagatgctagtcgcatcactgaaagaaagccatggaaa
cgcaactttgtgttgccggttacaggaacgccaaggcaaaggtagatggt
gctag
gaattcttgcagctgattggctacagcaacttccagagagtggaagaata
ctgcgaaaaggtgtggtgtacagataagaagaggaaaaagcttaaaatgt
ctccctccaagtggaagtatgccaacccccaggaaaagaggcttcgctct
aaagctgagcacttccgcctgcccaggcacacgctgctctcctgagggcg
ccctctgccggcggctgaggaacctaggatggaaacatttttttaaaggg
ggggaaaaaaaaaagactgaaagcatgcagtctctttccattacttcaaa
gaactttctgtagtactgagaggctgggaaggtgttttaagttattctgc
atattcatctgactgtacaaacatctctctcacagtactagtacttaaac
gagtgtattgctttaaaaggcttcacgtatttatcaacatatgatcgggc
tgtaattttgagcttgcttttcagggaaattattttgccattgggatatg
tattataattataatattaaagaaaaagttataggttttcataatcaaga
aaaatgtaaaactctttctggagttttttcttttttcttttcctctttgc
agccataaggtaaaatatacagaatatcagatattgtagaattatcgtgt
gagctttctggtcagttgttgatttttttttttaagccataagttgtatg
tagctgtgttgtggttgctataaactgtacaagaaatctgcaacccatcc
attctgaggcttgttctcttcatgaaacactcactaaactatattaagaa
tatttctgttttataaacaagacatatcttttaaatttcacttcagtgtg
gaaggatggaagatagcctctcagaaagatatttttaaatagtttcaacc
atgaaagtagaattctgttaaaaaggtctgtgcttccctcttgtggtaca
agaaggcattgcatctctcaatgctgttccatatttcctgcaatgacttg
aaacaaaattgtagtagaatacatctaggtccactattcagaagactcaa
ttaaaaaataatttatataatatttaatatggaaatagcatgctctgata
tcatactttcacaccaacgagatgttactgcattgagcttgaattgaaga
gtaccttcagtctactggaaacaagacactcggaagtgtgtgctttaccc
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14252596_14253817
seq2: B6Ng01-325O06.g_69_1270

seq1  GAATTCTTGCAGCTGATTGGCTACAGCAACTTCCAGAGAGTGGAAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGCTGATTGGCTACAGCAACTTCCAGAGAGTGGAAGAATA  50

seq1  CTGCGAAAAGGTGTGGTGTACAGATAAGAAGAGGAAAAAGCTTAAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAAAAGGTGTGGTGTACAGATAAGAAGAGGAAAAAGCTTAAAATGT  100

seq1  CTCCCTCCAAGTGGAAGTATGCCAACCCCCAGGAAAAGAGGCTTCGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCAAGTGGAAGTATGCCAACCCCCAGGAAAAGAGGCTTCGCTCT  150

seq1  AAAGCTGAGCACTTCCGCCTGCCCAGGCACACGCTGCTCTCCTGAGGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGCACTTCCGCCTGCCCAGGCACACGCTGCTCTCCTGAGGGCG  200

seq1  CCCTCTGCCGGCGGCTGAGGAACCTAGGATGGAAACATTTTTTTAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCGGCGGCTGAGGAACCTAGGATGGAAACATTTTTTTAAAGGG  250

seq1  GGGGAAAAAAAAAAGACTGAAAGCATGCAGTCTCTTTCCATTACTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAAAAAAGACTGAAAGCATGCAGTCTCTTTCCATTACTTCAAA  300

seq1  GAACTTTCTGTAGTACTGAGAGGCTGGGAAGGTGTTTTAAGTTATTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTGTAGTACTGAGAGGCTGGGAAGGTGTTTTAAGTTATTCTGC  350

seq1  ATATTCATCTGACTGTACAAACATCTCTCTCACAGTACTAGTACTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATCTGACTGTACAAACATCTCTCTCACAGTACTAGTACTTAAAC  400

seq1  GAGTGTATTGCTTTAAAAGGCTTCACGTATTTATCAACATATGATCGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATTGCTTTAAAAGGCTTCACGTATTTATCAACATATGATCGGGC  450

seq1  TGTAATTTTGAGCTTGCTTTTCAGGGAAATTATTTTGCCATTGGGATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTGAGCTTGCTTTTCAGGGAAATTATTTTGCCATTGGGATATG  500

seq1  TATTATAATTATAATATTAAAGAAAAAGTTATAGGTTTTCATAATCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATTATAATATTAAAGAAAAAGTTATAGGTTTTCATAATCAAGA  550

seq1  AAAATGTAAAACTCTTTCTGGAGTTTTTTCTTTTTTCTTTTCCTCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAAACTCTTTCTGGAGTTTTTTCTTTTTTCTTTTCCTCTTTGC  600

seq1  AGCCATAAGGTAAAATATACAGAATATCAGATATTGTAGAATTATCGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAGGTAAAATATACAGAATATCAGATATTGTAGAATTATCGTGT  650

seq1  GAGCTTTCTGGTCAGTTGTTGATTTTTTTTTTTAAGCCATAAGTTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCTGGTCAGTTGTTGATTTTTTTTTTTAAGCCATAAGTTGTATG  700

seq1  TAGCTGTGTTGTGGTTGCTATAAACTGTACAAGAAATCTGCAACCCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTTGTGGTTGCTATAAACTGTACAAGAAATCTGCAACCCATCC  750

seq1  ATTCTGAGGCTTGTTCTCTTCATGAAACACTCACTAAACTATATTAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGCTTGTTCTCTTCATGAAACACTCACTAAACTATATTAAGAA  800

seq1  TATTTCTGTTTTATAAACAAGACATATCTTTTAAATTTCACTTCAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTTTTATAAACAAGACATATCTTTTAAATTTCACTTCAGTGTG  850

seq1  GAAGGATGGAAGATAGCCTCTCAGAAAGATATTTTTAAATAGTTTCAAAC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGGATGGAAGATAGCCTCTCAGAAAGATATTTTTAAATAGTTTC-AAC  899

seq1  CATGAAAGTAGAATTCTGTTAAAAAGGTCTGTGCTTCCCTCTTGTGGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTAGAATTCTGTTAAAAAGGTCTGTGCTTCCCTCTTGTGGTAC  949

seq1  AAGAAGGCATTGCATCTCTCAATGCTGTTTCCATAATTTTCCTGCAATGA  1000
      ||||||||||||||||||||||||||| |||||||  |||||||||||||
seq2  AAGAAGGCATTGCATCTCTCAATGCTG-TTCCATA--TTTCCTGCAATGA  996

seq1  CTTGAAAACAAAATGTAGTAG-ATACATCTA-GTTCACTATTCAGAAGAC  1048
      |||||||  ||| |||||||| ||||||||| || |||||||||||||||
seq2  CTTGAAACAAAATTGTAGTAGAATACATCTAGGTCCACTATTCAGAAGAC  1046

seq1  TCAATTAAAAAATAATTTTATATAATAATTTAATATGGAAATAGCATGCT  1098
      ||||||||||||||| |||||||||| |||||||||||||||||||||| 
seq2  TCAATTAAAAAATAA-TTTATATAAT-ATTTAATATGGAAATAGCATGC-  1093

seq1  TCTGGTTAATTCATTACTTCACAACACAACGAAGATGTTAACTGCATTTG  1148
      ||||   |  ||||   ||||||   ||||| ||||||| |||||| |||
seq2  TCTG---ATATCATACTTTCACA--CCAACG-AGATGTT-ACTGCA-TTG  1135

seq1  AGCTTTGAAATAGAAGAAAGTACCTTTCCAGTCCTACCCTGAGACAAGAC  1198
      |||||   ||| ||||  ||||||||  |||| ||| |  || |||||||
seq2  AGCTT--GAATTGAAG--AGTACCTT--CAGT-CTA-CTGGAAACAAGAC  1177

seq1  ACTCTGAA-AGTGTGCTTTACCCGC  1222
      |||| |||  |||||||||||||||
seq2  ACTCGGAAGTGTGTGCTTTACCCGC  1202