BAC Information

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BAC

Clone NameB6Ng01-326D03
Chromosome5 (Build37)
Map Location 41,426,471 - 41,515,356
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326D03.bB6Ng01-326D03.g
ACCGA114064GA114065
length1,1701,155
definitionB6Ng01-326D03.b B6Ng01-326D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,426,471 - 41,427,645)(41,514,211 - 41,515,356)
sequence
gaattcattatggtattttcattcataatatactgtcatattcatactat
tgcctacacttcccctgtagtctccttcccttcttgcactgtgtgtgtgt
gtatgtatgatcttacagtatcatgattattctcacagggatagataaat
gttccctacttgccctcaaaatcatgacagtttttcttggcttcatgaat
gatgggactacacacatgcatgaattgtctatgataatgtgatttgaaat
catgcattactctattttattattattatttggataggaacttctataga
tgtttgatccctttggaattttgatggtgattgtattgaatttgggtgag
agccattctcccaatgtgcactctcctgacttatgaacataggaggtcat
ccttctgttcaatgtcgccttcagtttctttttctcctgttcactgtttg
cattaagtagatgcttcacctccttagttagggttaattctgtgttttaa
gcaatttttaaaagcgatttcctacctatttttcctcacatattaataat
tggtatatagaaaagttccagattttgtatatcaattttctctcttaata
cttcaatttaaatacttttagatataaaagtgttgatttggaatctttta
ggcctttcaagtatttgattagatcacctgcaaatcaagataatgtgatt
tcttccttccatatttgtgactcatatcttttttgtctcactggtctaag
acttcaaatacattcagtgtaagtggagaaaatggacagtctttcactcc
tcatttaagggaaaatactttccctttttctttactgagtaaattgttgt
ctataggtttttggtgcccaaattttatgatgatgttgtatgatcttata
tttgtagcttcttcaggctttctaccatgaactgatattaaacttcatta
aagaggtttgtctgtatgtgttgagatgaacatatacttttttatccttg
atcctacttgtgcattttagtgtgtttattgatttgcaagtaagtcatct
gcatttgaacactgaactggcaaatgcaaatcatcgcaggagctgaacat
tgagagagccttatagaaattgcaagcttctgtgtccgagaatgtacttg
atcatctgtatacatttaac

gaattccattactaatggcagcctggtcaagtctcaatctcttaggtttg
tttcttctctgcttcctcctctgcttccattttctccctttctttttgcc
ttcattctgcatgcaccttctggaggggacactgtatggtgacagatttc
taaatctgtgcgttgacatttgatgagatgcttaagctgcaccttgtggg
ttttcctttattttagttcttatttttttttcatactgtatattttgatc
acactctttcctctgccccaactcctcttatagcctccctacctcttgat
ccatccagaattcataacttttctctctctcaaaaagaatgcaacatgaa
gatgaaaacaagcaaacaaataaggacaaaaaagccacaaaacaatacaa
aaacaaaaatcacataaaaagttggaggtctgttttgtgttggacagcta
ctactggacaaggagcctgcccttgcaaataatatatatgtcttgttatg
tttgaatgatgctgttcccttggtgtcatccaccacctctgtttcataca
atctttctgcctcctctttcacatagatctcagagccttgagtgaatgac
tttgataatgacatctatttagtaccgagcgccccaaagcctcttattct
ctgcacattgtacagctgtgggtctgtgttaataatcaccttctacaaga
catttccctcacaaaagtggaaccctgtactgatctatgggtgtagcagt
atgtcatcaggagtcattttattgacatgtttctttaggagaataatagt
ttgtattcaacagtaaattatgaaatttacactgtagggccatccctgag
tctttctttgatgaatccccccaaatcaataccttttaggatttcttctt
ggaaattgagcatctcccttctgatctttagaagattctttctaatctgt
tgcatatgactgggctaccagagcaacataggacaaagctgccaggtcca
gcagctcagctcatcaaggaagtgtggaagaacttctgtttgtctcccag
gcttcctacaacatcagaaacatatgcaataatcaataccgcctagcact
tatacaagaagaactctagttgcctttcaggcgaacctcccggattcatt
cttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41426471_41427645
seq2: B6Ng01-326D03.b_48_1217

seq1  GAATTCATTATGGTATTTTCATTCATAATATACTGTCATATTCATACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGGTATTTTCATTCATAATATACTGTCATATTCATACTAT  50

seq1  TGCCTACACTTCCCCTGTAGTCTCCTTCCCTTCTTGCACTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACACTTCCCCTGTAGTCTCCTTCCCTTCTTGCACTGTGTGTGTGT  100

seq1  GTATGTATGATCTTACAGTATCATGATTATTCTCACAGGGATAGATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGATCTTACAGTATCATGATTATTCTCACAGGGATAGATAAAT  150

seq1  GTTCCCTACTTGCCCTCAAAATCATGACAGTTTTTCTTGGCTTCATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTACTTGCCCTCAAAATCATGACAGTTTTTCTTGGCTTCATGAAT  200

seq1  GATGGGACTACACACATGCATGAATTGTCTATGATAATGTGATTTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTACACACATGCATGAATTGTCTATGATAATGTGATTTGAAAT  250

seq1  CATGCATTACTCTATTTTATTATTATTATTTGGATAGGAACTTCTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTACTCTATTTTATTATTATTATTTGGATAGGAACTTCTATAGA  300

seq1  TGTTTGATCCCTTTGGAATTTTGATGGTGATTGTATTGAATTTGGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATCCCTTTGGAATTTTGATGGTGATTGTATTGAATTTGGGTGAG  350

seq1  AGCCATTCTCCCAATGTGCACTCTCCTGACTTATGAACATAGGAGGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTCCCAATGTGCACTCTCCTGACTTATGAACATAGGAGGTCAT  400

seq1  CCTTCTGTTCAATGTCGCCTTCAGTTTCTTTTTCTCCTGTTCACTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTCAATGTCGCCTTCAGTTTCTTTTTCTCCTGTTCACTGTTTG  450

seq1  CATTAAGTAGATGCTTCACCTCCTTAGTTAGGGTTAATTCTGTGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTAGATGCTTCACCTCCTTAGTTAGGGTTAATTCTGTGTTTTAA  500

seq1  GCAATTTTTAAAAGCGATTTCCTACCTATTTTTCCTCACATATTAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTAAAAGCGATTTCCTACCTATTTTTCCTCACATATTAATAAT  550

seq1  TGGTATATAGAAAAGTTCCAGATTTTGTATATCAATTTTCTCTCTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATAGAAAAGTTCCAGATTTTGTATATCAATTTTCTCTCTTAATA  600

seq1  CTTCAATTTAAATACTTTTAGATATAAAAGTGTTGATTTGGAATCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTAAATACTTTTAGATATAAAAGTGTTGATTTGGAATCTTTTA  650

seq1  GGCCTTTCAAGTATTTGATTAGATCACCTGCAAATCAAGATAATGTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCAAGTATTTGATTAGATCACCTGCAAATCAAGATAATGTGATT  700

seq1  TCTTCCTTCCATATTTGTGACTCATATCTTTTTTGTCTCACTGGTCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCCATATTTGTGACTCATATCTTTTTTGTCTCACTGGTCTAAG  750

seq1  ACTTCAAATACATTCAGTGTAAGTGGAGAAAATGGACAGTCTTTCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATACATTCAGTGTAAGTGGAGAAAATGGACAGTCTTTCACTCC  800

seq1  TCATTTAAGGGAAAATACTTTCCCTTTTTCTTTACTGAGTAAATTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGGGAAAATACTTTCCCTTTTTCTTTACTGAGTAAATTGTTGT  850

seq1  CTATAGGTTTTTGGTGCCCAAATTTTATGATGATGTTGTATGATCTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTTTTTGGTGCCCAAATTTTATGATGATGTTGTATGATCTTATA  900

seq1  TTTGTAGCTTCTTCAGGGCTTTCTACCATGAACTGATATTAAACTTCATT  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTTCTTCA-GGCTTTCTACCATGAACTGATATTAAACTTCATT  949

seq1  AAAGAGGTTTGTCTGTATGTGTTGAGATGAACATATAC-TTTTTATCCTT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGAGGTTTGTCTGTATGTGTTGAGATGAACATATACTTTTTTATCCTT  999

seq1  GATCCTACTTGTGCATTTTAGTGTGTTTATTGATTTGCAAGTTAAGTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATCCTACTTGTGCATTTTAGTGTGTTTATTGATTTGCAAG-TAAGTCAT  1048

seq1  CCTTGCATTTG-ACACTGAACTGGCAAATGCAAATCATCGCAGGGAGCTG  1098
      |  |||||||| |||||||||||||||||||||||||||||| |||||||
seq2  C--TGCATTTGAACACTGAACTGGCAAATGCAAATCATCGCA-GGAGCTG  1095

seq1  AACATTGAGAGAAGCTTATAGGAAATTGCAAGCTTCTGTGTCAGAG-ATG  1147
      ||||||||||||  |||||| ||||||||||||||||||||| ||| |||
seq2  AACATTGAGAGAGCCTTATA-GAAATTGCAAGCTTCTGTGTCCGAGAATG  1144

seq1  TACTTTGATCATCTGTAATACATATAAC  1175
      ||| |||||||||||| |||||| ||||
seq2  TAC-TTGATCATCTGT-ATACATTTAAC  1170


seq1: chr5_41514211_41515356
seq2: B6Ng01-326D03.g_65_1219 (reverse)

seq1  GGAAGAATGAA-ACGGGAGTGTCGGCCTGGAAAAGGCAACTAGAG-TCT-  47
      |||||||||||  |||||| ||  |||||  |||||||||||||| ||| 
seq2  GGAAGAATGAATCCGGGAG-GTTCGCCTG--AAAGGCAACTAGAGTTCTT  47

seq1  -CTGTATAAGTGCTA-GCGGTA-TGATTA-TGCATATGTCT-GGATGTTG  92
        ||||||||||||| |||||| |||||| ||||||||| |  |||||||
seq2  CTTGTATAAGTGCTAGGCGGTATTGATTATTGCATATGTTTCTGATGTTG  97

seq1  TAGGGAAGCCTGGGAGACAAACAGAAGT--CTCCACAC-TCCCTGATGAG  139
      || |||||||||||||||||||||||||   ||||||| ||| |||||||
seq2  TA-GGAAGCCTGGGAGACAAACAGAAGTTCTTCCACACTTCCTTGATGAG  146

seq1  CTGAGCTGCTGGACCTGGCAGCCTTTGTCCTATG-TGCTCTGGTAG-CCA  187
      ||||||||||||||||||||| |||||||||||| ||||||||||| |||
seq2  CTGAGCTGCTGGACCTGGCAG-CTTTGTCCTATGTTGCTCTGGTAGCCCA  195

seq1  GTCATATGCAACAGATTAGAAAGAATCTTCTAAAGATCAGAAGGGAGATG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGCAACAGATTAGAAAGAATCTTCTAAAGATCAGAAGGGAGATG  245

seq1  CTCAA-TTCCAAGAAGAAATCCTAAAAGGTATTGATTTGGGGGGATTCAT  286
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTCCAAGAAGAAATCCTAAAAGGTATTGATTTGGGGGGATTCAT  295

seq1  CAAAGAAAGACTCAGGGATGGCCCTACAGTGTAAATTTCATAATTTACTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGACTCAGGGATGGCCCTACAGTGTAAATTTCATAATTTACTG  345

seq1  TTGAATACAAACTATTATTCTCCTAAAGAAACATGTCAATAAAATGACTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACAAACTATTATTCTCCTAAAGAAACATGTCAATAAAATGACTC  395

seq1  CTGATGACATACTGCTACACCCATAGATCAGTACAGGGTTCCACTTTTGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACATACTGCTACACCCATAGATCAGTACAGGGTTCCACTTTTGT  445

seq1  GAGGGAAATGTCTTGTAGAAGGTGATTATTAACACAGACCCACAGCTGTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAATGTCTTGTAGAAGGTGATTATTAACACAGACCCACAGCTGTA  495

seq1  CAATGTGCAGAGAATAAGAGGCTTTGGGGCGCTCGGTACTAAATAGATGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCAGAGAATAAGAGGCTTTGGGGCGCTCGGTACTAAATAGATGT  545

seq1  CATTATCAAAGTCATTCACTCAAGGCTCTGAGATCTATGTGAAAGAGGAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAAAGTCATTCACTCAAGGCTCTGAGATCTATGTGAAAGAGGAG  595

seq1  GCAGAAAGATTGTATGAAACAGAGGTGGTGGATGACACCAAGGGAACAGC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGATTGTATGAAACAGAGGTGGTGGATGACACCAAGGGAACAGC  645

seq1  ATCATTCAAACATAACAAGACATATATATTATTTGCAAGGGCAGGCTCCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAAACATAACAAGACATATATATTATTTGCAAGGGCAGGCTCCT  695

seq1  TGTCCAGTAGTAGCTGTCCAACACAAAACAGACCTCCAACTTTTTATGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTAGTAGCTGTCCAACACAAAACAGACCTCCAACTTTTTATGTG  745

seq1  ATTTTTGTTTTTGTATTGTTTTGTGGCTTTTTTGTCCTTATTTGTTTGCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTTGTATTGTTTTGTGGCTTTTTTGTCCTTATTTGTTTGCT  795

seq1  TGTTTTCATCTTCATGTTGCATTCTTTTTGAGAGAGAGAAAAGTTATGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATCTTCATGTTGCATTCTTTTTGAGAGAGAGAAAAGTTATGAA  845

seq1  TTCTGGATGGATCAAGAGGTAGGGAGGCTATAAGAGGAGTTGGGGCAGAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATGGATCAAGAGGTAGGGAGGCTATAAGAGGAGTTGGGGCAGAG  895

seq1  GAAAGAGTGTGATCAAAATATACAGTATGAAAAAAAAATAAGAACTAAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTGTGATCAAAATATACAGTATGAAAAAAAAATAAGAACTAAAA  945

seq1  TAAAGGAAAACCCACAAGGTGCAGCTTAAGCATCTCATCAAATGTCAACG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAACCCACAAGGTGCAGCTTAAGCATCTCATCAAATGTCAACG  995

seq1  CACAGATTTAGAAATCTGTCACCATACAGTGTCCCCTCCAGAAGGTGCAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTAGAAATCTGTCACCATACAGTGTCCCCTCCAGAAGGTGCAT  1045

seq1  GCAGAATGAAGGCAAAAAGAAAGGGAGAAAATGGAAGCAGAGGAGGAAGC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGAAGGCAAAAAGAAAGGGAGAAAATGGAAGCAGAGGAGGAAGC  1095

seq1  AGAGAAGAAACAAACCTAAGAGATTGAGACTTGACCAGGCTGCCATTAGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAAACAAACCTAAGAGATTGAGACTTGACCAGGCTGCCATTAGT  1145

seq1  AATGGAATTC  1146
      ||||||||||
seq2  AATGGAATTC  1155


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