BAC Information

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BAC

Clone NameB6Ng01-326F04
Chromosome5 (Build37)
Map Location 83,703,128 - 83,704,256
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326F04.bB6Ng01-326F04.g
ACCGA114159GA114160
length1,1181,173
definitionB6Ng01-326F04.b B6Ng01-326F04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtataaaacaccaaaacttggtttgattcgaaaaatgtctaat
gcctacacatatagtgtattccaatttgtgcacacataatatctattgat
gggactgtactggtgaaagaatttttaaagttgttttcagcttgtaaacc
tatttgtttactatatggaacataccctttcagataacttgctgaaaatg
gacagcatcttggttcaattgggctactctccatttcttcatttattatt
tatttatttactttacatcctgaatgtatccccactccctcctctcctcc
cactaccaccctcccacccacattctcccattcctccatctccttctcca
gttgggctcttcttcaaagccgatgtttaggtctggccacggtgacacat
tccttcaatctgagcacatatgttcttctacagaagtccatgatcagata
gcattccaaatgtaatttttatttgcctagtatattagatattctaacca
aggcatttcttaaataatccttagtaaattttacgtgtaatgaaagcagt
gatcatagaacaatgatatgacctccacctacagacactaaatatagaag
agctcagggtttcatatcttcttcattttattttcttgttactgggaatg
tgggatctagaaatgataaaatgacaacagcttcaattatataactgtgt
aatacattattattattattattaacatttaaaacatctcattaaacaat
tgggatgacttcctagagacaggattacagatgcatactgttaaatatta
aaccttgatggtacctcttccttcttccctcaatctttatttattattta
tttatttatttatttatttttaaagattaacacagcaattttattttgct
tctaaattttttgataaacagctttgtgatattgccacaaataaaattga
aatatgtccaataaaagtacatactcttttttttccattttttattagta
tttagctcatacatttccatgctatacccaaagtcccccatacccaccac
cccactccctacccaccacttcccctttttggccttgcgtacccctgtac
tgggccaataaagtttgc
gaattctcctctgaataaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaa
ggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacttacaaattaaagaaattgccgagtcggt
ccgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
ttgccggcatggcactaactcctgccgactggcaaacggttgtaaaagcc
gctctccctagtatgggcaaatatatggaatggagagctctttggcatga
agctgcacaagcgcaggcccgagcaaacgcagctgctttgactccagagc
agagagattggacttttgacttgttaacgggtcagggagcttattctgct
gatcagacaaactaccattggggagcttatgcccagatttcttccacggc
tattagggcctggaaggcgctctctcgagcaggtgaaaccactggtcagt
taacaaagataatccagggacctcaggaatccttctcagattttgtggcc
agaatgacagaggcagcagagcgtatttttggagagtcagagcaagctgc
gcctctgatagaacagctaatctatgagcaagccacaaaggagtgccgag
cagccatagccccaagaaagaacaaaggtttacaagactggctcagggtt
tgtcgggagcttgggggacctctcaccaatgcaggcttagcggctgccat
ccttcaatcccaaaatgctccatgggcagaaatgatcggaggacatgttt
tattgcgaagcctggcattttaagaaagattgcagagctcagataacagg
aggactctcactctttgctctagtgtggcagtatccatagagcctgacag
tgtcgctctgtgagaattaatggcccagagattcttccccaacatggaat
aggtcaaatcacagcctatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83703128_83704256
seq2: B6Ng01-326F04.b_51_1168 (reverse)

seq1  GCAAACTTTATATGCCCCAGTACAGGGGTACGCCAGGGCCAAAAAGGGGG  50
      ||||||||||| || ||||||||||||||||| || ||||||||||||| 
seq2  GCAAACTTTAT-TGGCCCAGTACAGGGGTACG-CAAGGCCAAAAAGGGGA  48

seq1  AGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTA  100
      ||| |||||||| ||||||||||   ||||||||||||||||||| ||||
seq2  AGT-GGTGGGTA-GGGAGTGGGG--TGGTGGGTATGGGGGACTTTGGGTA  94

seq1  TAGCATTGGAAATGTAATGAGCTAAATACCTAATAAAAAATGGAAAAAAA  150
      ||||| ||||||||| |||||||||||| |||||||||||||| ||||||
seq2  TAGCA-TGGAAATGT-ATGAGCTAAATA-CTAATAAAAAATGG-AAAAAA  140

seq1  AAGAGTATGTACTTTTATTGGACATATTTCAATTTTATTTGTGGCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATGTACTTTTATTGGACATATTTCAATTTTATTTGTGGCAATAT  190

seq1  CACAAAGCTGTTTATCAAAAAATTTAGAAGCAAAATAAAATTGCTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTGTTTATCAAAAAATTTAGAAGCAAAATAAAATTGCTGTGTT  240

seq1  AATCTTTAAAAATAAATAAATAAATAAATAAATAAATAAATAAAGATTGA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCTTTAAAAATAAATAAATAAATAAATAAAT-AATAAATAAAGATTGA  289

seq1  GGGAAGAAGGAAGAGGTACCATCAAGGTTTAATATTTAACAGTATGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGGAAGAGGTACCATCAAGGTTTAATATTTAACAGTATGCATC  339

seq1  TGTAATCCTGTCTCTAGGAAGTCATCCCAATTGTTTAATGAGATGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCTGTCTCTAGGAAGTCATCCCAATTGTTTAATGAGATGTTTTA  389

seq1  AATGTTAATAATAATAATAATAATGTATTACACAGTTATATAATTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATAATAATAATAATAATGTATTACACAGTTATATAATTGAAGC  439

seq1  TGTTGTCATTTTATCATTTCTAGATCCCACATTCCCAGTAACAAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCATTTTATCATTTCTAGATCCCACATTCCCAGTAACAAGAAAAT  489

seq1  AAAATGAAGAAGATATGAAACCCTGAGCTCTTCTATATTTAGTGTCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGAAGATATGAAACCCTGAGCTCTTCTATATTTAGTGTCTGTA  539

seq1  GGTGGAGGTCATATCATTGTTCTATGATCACTGCTTTCATTACACGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGTCATATCATTGTTCTATGATCACTGCTTTCATTACACGTAAA  589

seq1  ATTTACTAAGGATTATTTAAGAAATGCCTTGGTTAGAATATCTAATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAAGGATTATTTAAGAAATGCCTTGGTTAGAATATCTAATATAC  639

seq1  TAGGCAAATAAAAATTACATTTGGAATGCTATCTGATCATGGACTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATAAAAATTACATTTGGAATGCTATCTGATCATGGACTTCTGT  689

seq1  AGAAGAACATATGTGCTCAGATTGAAGGAATGTGTCACCGTGGCCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACATATGTGCTCAGATTGAAGGAATGTGTCACCGTGGCCAGACC  739

seq1  TAAACATCGGCTTTGAAGAAGAGCCCAACTGGAGAAGGAGATGGAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCGGCTTTGAAGAAGAGCCCAACTGGAGAAGGAGATGGAGGAAT  789

seq1  GGGAGAATGTGGGTGGGAGGGTGGTAGTGGGAGGAGAGGAGGGAGTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATGTGGGTGGGAGGGTGGTAGTGGGAGGAGAGGAGGGAGTGGGG  839

seq1  ATACATTCAGGATGTAAAGTAAATAAATAAATAATAAATGAAGAAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAGGATGTAAAGTAAATAAATAAATAATAAATGAAGAAATGGA  889

seq1  GAGTAGCCCAATTGAACCAAGATGCTGTCCATTTTCAGCAAGTTATCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCCAATTGAACCAAGATGCTGTCCATTTTCAGCAAGTTATCTGA  939

seq1  AAGGGTATGTTCCATATAGTAAACAAATAGGTTTACAAGCTGAAAACAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTATGTTCCATATAGTAAACAAATAGGTTTACAAGCTGAAAACAAC  989

seq1  TTTAAAAATTCTTTCACCAGTACAGTCCCATCAATAGATATTATGTGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTCTTTCACCAGTACAGTCCCATCAATAGATATTATGTGTGC  1039

seq1  ACAAATTGGAATACACTATATGTGTAGGCATTAGACATTTTTCGAATCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGGAATACACTATATGTGTAGGCATTAGACATTTTTCGAATCAA  1089

seq1  ACCAAGTTTTGGTGTTTTATACTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  ACCAAGTTTTGGTGTTTTATACTGAATTC  1118