BAC Information

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BAC

Clone NameB6Ng01-326M21
Chromosome5 (Build37)
Map Location 5,559,292 - 5,733,718
singlet/doubletdoublet
Overlap geneGtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12
Downstream geneSteap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326M21.bB6Ng01-326M21.g
ACCGA114524GA114525
length1,2121,146
definitionB6Ng01-326M21.b B6Ng01-326M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,732,520 - 5,733,718)(5,559,292 - 5,560,441)
sequence
gaattcagagttcccctgcctctgcctctcaggtacagggattagagact
aatgctgccacacaggttcaggaatttttgtgacagaaaaaaaaaaaaaa
agagtcaaaaaacagcctcagctctgaggaggtagagagaaaaggatcct
cggaccttgataaccacttagacgagcaaaatccacaactccaggttcaa
agagaaaatctgtctcaaaaaaaataaaaaaggtgatgagcagatgggaa
agatgcctaagacaactctgacccatatgcactcacagagttgttttcca
acaatagacgataccgtgctttggtgcagtcttgagtgtgcttttcctca
gtcatcctagacataacacttggcatatagcaagccaagggcaggaaagg
atgtgcacatacaaaagacctgattcttacgcagcctcagttttaggaga
tccctagattctgtcatcactaaggaaggaatgactagaaaggcaaagac
aggtcagtgtagagatggttcagaaaagaggaactactgacatacaatag
gaggacctcagttagaataggagggccaggtaaagtacgacagactggaa
agtctacttcaggcctgttgaaacagtgtatctgaagaaatagcactgta
gacatggaggaacaccacatgggttatcagggccgttttatgacatgctg
ctgctgtctgaactttgtccttcaggaaaactactgaaaaactataagca
agggcttaccaccatctcaattgcatgatagaaagatctggaaagtacag
gtgacaccaggaaccctggttacttctcccattgttataactacacatgg
caagaagaaacttgagagaggaagaatttagggaaacaatacaaaatagt
accatccaatgctcacgccagctactctctggccccagtggtctctgcat
catggagactgccacagagctccagaatcttcttccctctggcaggtcgc
taccacgccagccctgagcttcaaagctcccatggccttttggtattgca
cttctggcaaacccttagcttgccgccgtgcctttctctccgggaaccca
agttgagcggcgtggtgaaggaaaaacaaccccaccaaaccttagtttca
gaatcaatggtaacctcaaatcgcctggaccattcattagaatccttaat
cttgtgaagcca

gaattccctaaagctggaccccaaacggccatcagcgtgtcactgagaca
caatcttctcccaggagacgggaaccgaggaacgacaacccaggaggaga
gcggcgaagacaccaaagctggggagacccccgtcacgaacctttctcaa
caaagcgcaaccgcagcgcaccatgagctccaaggggcaggactcccgcc
cgcagaatccggacaaacttcggtcgggcgcgcgtactgacgtcactact
ggtcgcagaggtgacgtctcagcggatccgcgcctgcgtgctgcatcgcg
ctcgaggaaggtgggcgtgtgctttggacgcctctgggtgcaggaaggag
agtgcagagcccagattcgtctaagttgtgtgcaaggggaagcagggctc
cgggcaggagtctctggagttgacgctttgaacgctatgcgctggagact
ggcctgcctcacaaacatttttatggtagctgaagaacctgaggtgccag
gattttctcacgatgaaagacccctccaacagacacacttgtacaaaaca
ccgagagctctaaaagactgctggatgatggcttgagcaatttttctagc
caaggcttaaacttcaggaaccagtcacttaaaacttgtagcacagaagt
attgaaagaagtgtgacgatctagatttttacaaaggatgatgtgtgcag
tggaggcaaacagaaaccccaacctggactcagccgagagttttcacctt
tcatttgaaggctgtccttgtgagaacacgagagattacattccagcttg
gagaggaagcttcagaaaaagatcactgaatggcaggcccatttcgccaa
tctttctgccaagtctttaagtgaaaaaggcacacgagcgtactagaggg
gtctccctttcactgctcatttattattttctatcattagaattattagg
tttagaatcccttggcgaaatgtgactcagtcatggtcactgggccaggg
cagtgcagctgagagtacctttaaggaattggtatgttcgttttcagtat
gagttgattaaggtagttacgaatagccccgaggtcctgcgctctagccg
ctttcttagctgaacctgcaaggcctagtcttggaaactctcgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5732520_5733718
seq2: B6Ng01-326M21.b_49_1260 (reverse)

seq1  TGGCTT-ACAAGATT-AGGATTCTAATTGATGCGTCCA-GCGA-TTGA-G  45
      |||||| |||||||| |||||||||||  ||| ||||| |||| |||| |
seq2  TGGCTTCACAAGATTAAGGATTCTAATGAATG-GTCCAGGCGATTTGAGG  49

seq1  TTACCATTGATTCTG-AACTAAGTTTGTGTGGTG----TTTTCCTTCACA  90
      ||||||||||||||| ||||||| ||  |||| |    ||||||||||| 
seq2  TTACCATTGATTCTGAAACTAAGGTTTGGTGGGGTTGTTTTTCCTTCACC  99

seq1  CGGCGGCTCAAC-TGGGTT-CCGGAGAGAAAGGCACGGCGGCAAAGCT-A  137
        || ||||||| |||||| |||||||||||||||||||||| ||||| |
seq2  ACGCCGCTCAACTTGGGTTCCCGGAGAGAAAGGCACGGCGGC-AAGCTAA  148

seq1  GGGTTTGCCAGAAGTGCAATA-CAAAAGGCCATGGGAGCTTTGAAGCTCA  186
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGTTTGCCAGAAGTGCAATACCAAAAGGCCATGGGAGCTTTGAAGCTCA  198

seq1  GGGCTGGCGTGGTAGCGACCTGCCAGAGGGAAG-AGATTCTGGAGCTCTG  235
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCTGGCGTGGTAGCGACCTGCCAGAGGGAAGAAGATTCTGGAGCTCTG  248

seq1  TGGCAGTCTCCATGATGCAGAGACCACTGGGGCCAGAGAGTAGCTGGCGT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTCCATGATGCAGAGACCACTGGGGCCAGAGAGTAGCTGGCGT  298

seq1  GAGCATTGGATGGTACTATTTTGTATTGTTTCCCTAAATTCTTCCTCTCT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGGATGGTACTATTTTGTATTGTTTCCCTAAATTCTTCCTCTCT  348

seq1  CAAGTTTCTTCTTGCCATGTGTAGTTATAACAATGGGAGAAGTAACCAGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTTCTTGCCATGTGTAGTTATAACAATGGGAGAAGTAACCAGG  398

seq1  GTTCCTGGTGTCACCTGTACTTTCCAGATCTTTCTATCATGCAATTGAGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTGTCACCTGTACTTTCCAGATCTTTCTATCATGCAATTGAGA  448

seq1  TGGTGGTAAGCCCTTGCTTATAGTTTTTCAGTAGTTTTCCTGAAGGACAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAGCCCTTGCTTATAGTTTTTCAGTAGTTTTCCTGAAGGACAA  498

seq1  AGTTCAGACAGCAGCAGCATGTCATAAAACGGCCCTGATAACCCATGTGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGACAGCAGCAGCATGTCATAAAACGGCCCTGATAACCCATGTGG  548

seq1  TGTTCCTCCATGTCTACAGTGCTATTTCTTCAGATACACTGTTTCAACAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCATGTCTACAGTGCTATTTCTTCAGATACACTGTTTCAACAG  598

seq1  GCCTGAAGTAGACTTTCCAGTCTGTCGTACTTTACCTGGCCCTCCTATTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGTAGACTTTCCAGTCTGTCGTACTTTACCTGGCCCTCCTATTC  648

seq1  TAACTGAGGTCCTCCTATTGTATGTCAGTAGTTCCTCTTTTCTGAACCAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGGTCCTCCTATTGTATGTCAGTAGTTCCTCTTTTCTGAACCAT  698

seq1  CTCTACACTGACCTGTCTTTGCCTTTCTAGTCATTCCTTCCTTAGTGATG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACTGACCTGTCTTTGCCTTTCTAGTCATTCCTTCCTTAGTGATG  748

seq1  ACAGAATCTAGGGATCTCCTAAAACTGAGGCTGCGTAAGAATCAGGTCTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCTAGGGATCTCCTAAAACTGAGGCTGCGTAAGAATCAGGTCTT  798

seq1  TTGTATGTGCACATCCTTTCCTGCCCTTGGCTTGCTATATGCCAAGTGTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTGCACATCCTTTCCTGCCCTTGGCTTGCTATATGCCAAGTGTT  848

seq1  ATGTCTAGGATGACTGAGGAAAAGCACACTCAAGACTGCACCAAAGCACG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGGATGACTGAGGAAAAGCACACTCAAGACTGCACCAAAGCACG  898

seq1  GTATCGTCTATTGTTGGAAAACAACTCTGTGAGTGCATATGGGTCAGAGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGTCTATTGTTGGAAAACAACTCTGTGAGTGCATATGGGTCAGAGT  948

seq1  TGTCTTAGGCATCTTTCCCATCTGCTCATCACCTTTTTTATTTTTTTTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGGCATCTTTCCCATCTGCTCATCACCTTTTTTATTTTTTTTGA  998

seq1  GACAGATTTTCTCTTTGAACCTGGAGTTGTGGATTTTGCTCGTCTAAGTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTTTCTCTTTGAACCTGGAGTTGTGGATTTTGCTCGTCTAAGTG  1048

seq1  GTTATCAAGGTCCGAGGATCCTTTTCTCTCTACCTCCTCAGAGCTGAGGC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAGGTCCGAGGATCCTTTTCTCTCTACCTCCTCAGAGCTGAGGC  1098

seq1  TGTTTTTTGACTCTTTTTTTTTTTTTTTCTGTCACAAAAATTCCTGAACC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGACTCTTTTTTTTTTTTTTTCTGTCACAAAAATTCCTGAACC  1148

seq1  TGTGTGGCAGCATTAGTCTCTAATCCCTGTACCTGAGAGGCAGAGGCAGG  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCAGCATTAGTCTCTAATCCCTGTACCTGAGAGGCAGAGGCAGG  1198

seq1  GGAACTCTGAATTC  1199
      ||||||||||||||
seq2  GGAACTCTGAATTC  1212


seq1: chr5_5559292_5560441
seq2: B6Ng01-326M21.g_62_1207

seq1  GAATTCCCTAAAGCTGGACCCCAAACGGCCATCAGCGTGTCACTGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAAGCTGGACCCCAAACGGCCATCAGCGTGTCACTGAGACA  50

seq1  CAATCTTCTCCCAGGAGACGGGAACCGAGGAACGACAACCCAGGAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCTCCCAGGAGACGGGAACCGAGGAACGACAACCCAGGAGGAGA  100

seq1  GCGGCGAAGACACCAAAGCTGGGGAGACCCCCGTCACGAACCTTTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGAAGACACCAAAGCTGGGGAGACCCCCGTCACGAACCTTTCTCAA  150

seq1  CAAAGCGCAACCGCAGCGCACCATGAGCTCCAAGGGGCAGGACTCCCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGCAACCGCAGCGCACCATGAGCTCCAAGGGGCAGGACTCCCGCC  200

seq1  CGCAGAATCCGGACAAACTTCGGTCGGGCGCGCGTACTGACGTCACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAATCCGGACAAACTTCGGTCGGGCGCGCGTACTGACGTCACTACT  250

seq1  GGTCGCAGAGGTGACGTCTCAGCGGATCCGCGCCTGCGTGCTGCATCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCAGAGGTGACGTCTCAGCGGATCCGCGCCTGCGTGCTGCATCGCG  300

seq1  CTCGAGGAAGGTGGGCGTGTGCTTTGGACGCCTCTGGGTGCAGGAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGAAGGTGGGCGTGTGCTTTGGACGCCTCTGGGTGCAGGAAGGAG  350

seq1  AGTGCAGAGCCCAGATTCGTCTAAGTTGTGTGCAAGGGGAAGCAGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGCCCAGATTCGTCTAAGTTGTGTGCAAGGGGAAGCAGGGCTC  400

seq1  CGGGCAGGAGTCTCTGGAGTTGACGCTTTGAACGCTATGCGCTGGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGAGTCTCTGGAGTTGACGCTTTGAACGCTATGCGCTGGAGACT  450

seq1  GGCCTGCCTCACAAACATTTTTATGGTAGCTGAAGAACCTGAGGTGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTCACAAACATTTTTATGGTAGCTGAAGAACCTGAGGTGCCAG  500

seq1  GATTTTCTCACGATGAAAGACCCCTCCAACAGACACACTTGTACAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTCACGATGAAAGACCCCTCCAACAGACACACTTGTACAAAACA  550

seq1  CCGAGAGCTCTAAAAGACTGCTGGATGATGGCTTGAGCAATTTTTCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCTCTAAAAGACTGCTGGATGATGGCTTGAGCAATTTTTCTAGC  600

seq1  CAAGGCTTAAACTTCAGGAACCAGTCACTTAAAACTTGTAGCACAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTAAACTTCAGGAACCAGTCACTTAAAACTTGTAGCACAGAAGT  650

seq1  ATTGAAAGAAGTGTGACGATCTAGATTTTTACAAAGGATGATGTGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGAAGTGTGACGATCTAGATTTTTACAAAGGATGATGTGTGCAG  700

seq1  TGGAGGCAAACAGAAACCCCAACCTGGACTCAGCCGAGAGTTTTCACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAAACAGAAACCCCAACCTGGACTCAGCCGAGAGTTTTCACCTT  750

seq1  TCATTTGAAGGCTGTCCTTGTGAGAACACGAGAGATTACATTCCAGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAGGCTGTCCTTGTGAGAACACGAGAGATTACATTCCAGCTTG  800

seq1  GAGAGGAAGCTTCAGAAAAAGATCACTGAATGGCAGGCCCATTTCGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGCTTCAGAAAAAGATCACTGAATGGCAGGCCCATTTCGCCAA  850

seq1  TCTTTCTGCCAAGTCTTTAAGTGAAAAAGGCACACGAGCGTACTAGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGCCAAGTCTTTAAGTGAAAAAGGCACACGAGCGTACTAGAGGG  900

seq1  GTCTCCC-TTCACTGCTCATTTATTATTTTCTATCATTAGAATTATTAGG  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTTTCACTGCTCATTTATTATTTTCTATCATTAGAATTATTAGG  950

seq1  TTTAGAAT-CCTTGGCGAAATGTGACTCAGTCATGGTCACT-GGCCAGGG  997
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAGAATCCCTTGGCGAAATGTGACTCAGTCATGGTCACTGGGCCAGGG  1000

seq1  CAGTGCAGCTGAGAGTAACCTTAAGGAATTGTTATGTTCCGTTTTTCAGT  1047
      ||||||||||||||||| | ||||||||||| |||||||   ||||||||
seq2  CAGTGCAGCTGAGAGTACCTTTAAGGAATTGGTATGTTC--GTTTTCAGT  1048

seq1  ATGAGGTTGATTTAAAGTTAGTTACAGATAG-CCCGAGGTCCTGCGCCTC  1096
      |||| |||||||  ||| |||||||  |||| |||||||||||||| |||
seq2  ATGA-GTTGATT--AAGGTAGTTACGAATAGCCCCGAGGTCCTGCG-CTC  1094

seq1  TAAGGCCGCTTTCCTAGCTGGAACCTGGCAAAGGCTAGTCTT-GAAACTC  1145
      ||  ||||||||| ||||| |||||| |||| | |||||||| |||||||
seq2  TA--GCCGCTTTCTTAGCT-GAACCT-GCAAGGCCTAGTCTTGGAAACTC  1140

seq1  T-GAAA  1150
      | ||||
seq2  TCGAAA  1146


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