BAC Information

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BAC

Clone NameB6Ng01-327L18
Chromosome5 (Build37)
Map Location 26,609,959 - 26,761,291
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L18.bB6Ng01-327L18.g
ACCGA115197GA115198
length1,1201,043
definitionB6Ng01-327L18.b B6Ng01-327L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,609,959 - 26,611,068)(26,760,743 - 26,761,291)
sequence
gaattctgtgtcctttgaccagaaatttttcaaagtaagctaaaaaaaaa
aatgtactggagatgaaaagaattaagaaaaaggtttacaacaaagctgc
catggtgagaaagacactgggctgggcctaccattgctgggttcaaagtc
tgatatgtctgcaacaggcagatggtcctgatcagtgcacttcggaccca
tggatcttaattgcctgttgataccaagcaggttatggctatgagaattt
taactttttataaggggactcagtggactcaaggagctgttaccaggaaa
aacactctccacagccttgagcacagtcagcatgtggtaagggtttgccc
ccatgcagctgacagcaattaaatatttccagctagctaaaatgagaggg
ggcttacaagtgtccctcttacagacaaggaacacatatttgagattact
aatgagcctcacgacatgttataaatgtgtactggaagatcacacagtga
cctgtaagtatgtacaatcgaagttaaaacaaatataggtgggctgcaga
cagctcaggaaggaaaatgtataaaatgagactttgagttgggacctcta
gtgtatgtgtaagcagacagttgtggcagtgcacacctgtaatcctgaca
cttgggaggtagaggcaggaggatccctggggctccctagctggccagtc
tagctgaatcagtgagctgaaggctcacagagagactcaattttcaggga
ataaagtagaaagtagaggaagatacacaaagtcctacacctgatttcac
atacatattccttatgtgcacacacacatacacacacacacacacacaca
cacacacacacacacacacacgcgcgcgcacacttcctcactattgagga
agacacctgaagttgaccatgttcatgtatatccatgaatacatacacat
gtatactgccccaagcacaaatgacacaaatatatgttatgttatatgac
cacagatgaccacaaatgacaccaaatatatgttatgtgctgttactttt
tgttaaacttgacataaacctagaagtcaccttagacctccttgacaata
aacctagagtccactagagt

gaattctttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtttgttagggtgtcttggactgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttaccttttgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagttttagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcctagaagctgtgttgctttggccaggaaggtggccggttgtctggagt
agaagatgtcatcgcctcagaagctctgtggctctcgccaggaaggtggc
cggccgtctgaagccgaagatggcgccgcctcagaagctctgtggctctc
gccaggaaggtggccggttgtctggagacgaagatggcgctgccccagaa
gctctgcgactctcgcccgtaccagaaacggctggcctctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcctggagccaagaaggct
cccaccagcgcctgtgacacaaacctctcaggccgggcagacccctgtgc
tctcaccaggaaggtggccggctgtctggagccgaagatggcgccgcccc
agataaatctttaaagtagggttggtagggaaatccaccttctcatctgc
ctatctttcagacttctgagaaatctagatgtccaggttaagaaagcatg
ttttcgtgtgactcagtgggaggtagcccctgcgcagaagaagagtatcc
agcactgactgagaggccactggtgcattgcaacagcagagagatgatag
atgtttcacaagagaacaagaggggtggttgatgggtgattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26609959_26611068
seq2: B6Ng01-327L18.b_46_1165

seq1  GAATTCTGTGTCCTTTGACCAGAAATTTTTCAAAGTAAGCTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCCTTTGACCAGAAATTTTTCAAAGTAAGCTAAAAAAAAA  50

seq1  AATGTACTGGAGATGAAAAGAATTAAGAAAAAGGTTTACAACAAAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTGGAGATGAAAAGAATTAAGAAAAAGGTTTACAACAAAGCTGC  100

seq1  CATGGTGAGAAAGACACTGGGCTGGGCCTACCATTGCTGGGTTCAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAGAAAGACACTGGGCTGGGCCTACCATTGCTGGGTTCAAAGTC  150

seq1  TGATATGTCTGCAACAGGCAGATGGTCCTGATCAGTGCACTTCGGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTCTGCAACAGGCAGATGGTCCTGATCAGTGCACTTCGGACCCA  200

seq1  TGGATCTTAATTGCCTGTTGATACCAAGCAGGTTATGGCTATGAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTAATTGCCTGTTGATACCAAGCAGGTTATGGCTATGAGAATTT  250

seq1  TAACTTTTTATAAGGGGACTCAGTGGACTCAAGGAGCTGTTACCAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTTATAAGGGGACTCAGTGGACTCAAGGAGCTGTTACCAGGAAA  300

seq1  AACACTCTCCACAGCCTTGAGCACAGTCAGCATGTGGTAAGGGTTTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTCCACAGCCTTGAGCACAGTCAGCATGTGGTAAGGGTTTGCCC  350

seq1  CCATGCAGCTGACAGCAATTAAATATTTCCAGCTAGCTAAAATGAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGCTGACAGCAATTAAATATTTCCAGCTAGCTAAAATGAGAGGG  400

seq1  GGCTTACAAGTGTCCCTCTTACAGACAAGGAACACATATTTGAGATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACAAGTGTCCCTCTTACAGACAAGGAACACATATTTGAGATTACT  450

seq1  AATGAGCCTCACGACATGTTATAAATGTGTACTGGAAGATCACACAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCTCACGACATGTTATAAATGTGTACTGGAAGATCACACAGTGA  500

seq1  CCTGTAAGTATGTACAATCGAAGTTAAAACAAATATAGGTGGGCTGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGTATGTACAATCGAAGTTAAAACAAATATAGGTGGGCTGCAGA  550

seq1  CAGCTCAGGAAGGAAAATGTATAAAATGAGACTTTGAGTTGGGACCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGAAGGAAAATGTATAAAATGAGACTTTGAGTTGGGACCTCTA  600

seq1  GTGTATGTGTAAGCAGACAGTTGTGGCAGTGCACACCTGTAATCCTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTAAGCAGACAGTTGTGGCAGTGCACACCTGTAATCCTGACA  650

seq1  CTTGGGAGGTAGAGGCAGGAGGATCCCTGGGGCTCCCTAGCTGGCCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGTAGAGGCAGGAGGATCCCTGGGGCTCCCTAGCTGGCCAGTC  700

seq1  TAGCTGAATCAGTGAGCTGAAGGCTCACAGAGAGACTCAATTTTCAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATCAGTGAGCTGAAGGCTCACAGAGAGACTCAATTTTCAGGGA  750

seq1  ATAAAGTAGAAAGTAGAGGAAGATACACAAAGTCCTACACCTGATTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAGAAAGTAGAGGAAGATACACAAAGTCCTACACCTGATTTCAC  800

seq1  ATACATATTCCTTATGTGCACACACACATACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTCCTTATGTGCACACACACATACACACACACACACACACACA  850

seq1  CACACACACACACACACACACGCGCGCGCACACTTCCTCACTATTGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGCGCGCGCACACTTCCTCACTATTGAGGA  900

seq1  AGACACCTGAAGTTGACCATGTTCATGTATATCCATGAATACATACACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTGAAGTTGACCATGTTCATGTATATCCATGAATACATACACAT  950

seq1  GTATACTGCCCCAAGCACAAATGACACAAATATATGTTATGTTATATGA-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATACTGCCCCAAGCACAAATGACACAAATATATGTTATGTTATATGAC  1000

seq1  CACAGATGA-CACAAATGACA-CAAATATATGTTATGTGCTGGTTACTTT  1047
      ||||||||| ||||||||||| ||||||||||||||||||| ||||||||
seq2  CACAGATGACCACAAATGACACCAAATATATGTTATGTGCT-GTTACTTT  1049

seq1  TTGTT-AACTTGACATAAA-CTAG-AGTCA-CTTAGAC--TCTTGAC-AT  1090
      ||||| ||||||||||||| |||| ||||| |||||||   |||||| ||
seq2  TTGTTAAACTTGACATAAACCTAGAAGTCACCTTAGACCTCCTTGACAAT  1099

seq1  AAA-CTAGAGTCACTTAGAGT  1110
      ||| ||||||||   ||||||
seq2  AAACCTAGAGTCCACTAGAGT  1120


seq1: chr5_26760743_26761291
seq2: B6Ng01-327L18.g_556_1107 (reverse)

seq1  TCAATCA-CCATCAACCA-CCCTCTTGTCTCCTTGTG-AACATCTATCAT  47
      ||||||| |||||||||| |||||||||   |||||| ||||||||||||
seq2  TCAATCACCCATCAACCACCCCTCTTGTTCTCTTGTGAAACATCTATCAT  50

seq1  CTCTTCTGCTGTTGCAATCCACCAGTGGCCTCTCAGTCAGTGCTGGATAC  97
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTC-TCTGCTGTTGCAATGCACCAGTGGCCTCTCAGTCAGTGCTGGATAC  99

seq1  TCTTC-TCTGCGCAGGGGCTACCTCCCACTGAGTCACACGGAAACATGCT  146
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTCTTCTGCGCAGGGGCTACCTCCCACTGAGTCACACGAAAACATGCT  149

seq1  TTCTTAACCTGGACATCTAGATTTCTCAGAAGTCTGAAAGATAGGCAGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACCTGGACATCTAGATTTCTCAGAAGTCTGAAAGATAGGCAGAT  199

seq1  GAGAAGGTGGATTTCCCTACCAACCCTACTTTAAAGATTTATCTGGGGCG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTGGATTTCCCTACCAACCCTACTTTAAAGATTTATCTGGGGCG  249

seq1  GCGCCATCTTCGGCTCCAGACAGCCGGCCACCTTCCTGGTGAGAGCACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATCTTCGGCTCCAGACAGCCGGCCACCTTCCTGGTGAGAGCACAG  299

seq1  GGGTCTGCCCGGCCTGAGAGGTTTGTGTCACAGGCGCTGGTGGGAGCCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCCCGGCCTGAGAGGTTTGTGTCACAGGCGCTGGTGGGAGCCTT  349

seq1  CTTGGCTCCAGGACTCCGCGGAGGGCAGGCTGCACGGGTGACCGTGTGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCCAGGACTCCGCGGAGGGCAGGCTGCACGGGTGACCGTGTGGA  399

seq1  ATACAGAGGCCAGCCGTTTCTGGTACGGGCGAGAGTCGCAGAGCTTCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGCCAGCCGTTTCTGGTACGGGCGAGAGTCGCAGAGCTTCTGG  449

seq1  GGCAGCGCCATCTTCGTCTCCAGACAACCGGCCACCTTCCTGGCGAGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGCCATCTTCGTCTCCAGACAACCGGCCACCTTCCTGGCGAGAGC  499

seq1  CACAGAGCTTCTGAGGCGGCGCCATCTTCGGCTTCAGACGGCCGGCCACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTTCTGAGGCGGCGCCATCTTCGGCTTCAGACGGCCGGCCACC  549

seq1  TTC  549
      |||
seq2  TTC  552


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