BAC Information

Click to search

BAC

Clone NameB6Ng01-327O23
Chromosome5 (Build37)
Map Location 121,928,317 - 122,064,634
singlet/doubletdoublet
Overlap geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik
Upstream geneSds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29
Downstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327O23.bB6Ng01-327O23.g
ACCGA115335GA115336
length1,1851,072
definitionB6Ng01-327O23.b B6Ng01-327O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,063,436 - 122,064,634)(121,928,317 - 121,929,385)
sequence
gaattctctggctgatgagggaggaaggaggaaggagcagggagccacca
gggtccctgaagagacatctgcagtgagagaagaaggcaggagattgggg
tctcaggagcaagacagggctgaggcaagtgagttgggactgaggaaagt
cagggctcaaaccccctttcagtggtgatagcagttgagggtgaaggccc
catgtgaacagtcattgaagccagctgtgggtggggcttgagcattggtt
ggacctcagccgggagctgtgggtgacacccagctcagggataccctacc
ctaacctaaccctaaccctggacagaagccgtgcctcaggctgccctgaa
ccttctccccacacagcctccatctcaccatgtgggtaagaagacttttc
cagccttccactctgcactgggcatggaggaccacggccctgaaccatcc
cctgggcaggcatcagggaggcctccgctggacacattctggaggccgaa
gctacagagcagtcatttttgacacgggcggagttctcgtgccttctcca
gggacagtggctgtgggtaagctccttattcttcttaactcttaggaagt
gggagtgggacaatggagacagataggcctgagggtcaaattctaagccc
cactgaagggcagtgtttgaggcaaattattcagctgttcagagtcattt
ttcttaatgacctatggaaaataaggtagatcaattggtagcagcatgaa
gccctgggttcagtccttagcacctcataagccaggtgtggcatttggtg
gctgaagcaggaggatcaggtgttctgggtcatcctctgctaaacagtaa
gttcaaggatagcctgagctacatgaaactgttacgacctgagtctgagg
gatactcagaagagctccagaatttcgaagtcagctgcaacttgcaaaag
aatcttattattatttcgaatcttgactcagattgcaaatgtagatctag
tggggaaccccccacccatttcccgattcgcgtgccaccaaaaaatcacg
aagaaccatctctgctgtattacaatgagactttaaattacggagcaaga
catgcattcccacacagggaaataacgaatgtcgtcatgaggcctggaag
cctagtttatggggtacggcttatcttgttcacat
gaattcttagattgggtttcattcatgtagcccagctggcctggaatttg
tactatgtagccatgcaggaggaacctgatgtaataaaattgatttggtg
ctataaaggattcactaaacaattgctgaggaatattaggccacagtaag
tagaatctggctcaggcggccctgcctgtgctgtgtctggagatgagtat
aaaccccggcttgttagagaaaactgaaccacactgaaattcatggttgc
tgaggaagcctgttaatgtttggttaccaagattgacctctgattaggta
ccagttccaaaacaagaggagataaccttaatttacaaccagccattcgg
cccctccccatatcaaagaacttatctccaataggaagctcaaggggtca
gctcgaggtctctgctgtcagtaagtctctggggaaccctgcgtaatgcg
gtgctcgcctttagtcccagcactcaggaggcagaggcaggcagatttct
gagttcaaggccagccaggtctacagagtgagttccaggacaaccagagc
tacacagagaaatcctgtctcgaaaaaaccaaaaaccaaaacaaaacaaa
aaaaaaacagtgctggtgtccttaagtgatgctggcactatccttgttgt
ttatcctcagtctgcctaagaggccagtcttacagtctgccatctttgtt
taagttgtttagagtgtaacctgtggccaggacctgggagaggcttaaag
atggcagtttaggtggaattataggcctcaggcctgtataggatggcagt
ttccttctctaaagttgctcctcttgtctgcatttgtcagaactagtcat
gtgctattacttaaaggggtttcctcttcatcaacctctaagtttgttta
gggattctttctggaaagtgtattaattccgtaatagccaaggatagcct
ttgaactccacgaccatgctctctctgcttccaaagcactgggatcactg
gccatccacatgttgaagtgcgatggcgtgcactggtcccagtaagtagc
taaggagactttatacctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122063436_122064634
seq2: B6Ng01-327O23.b_48_1232 (reverse)

seq1  ATGTGAACAAAGATAAGCCCCTTACCCCATAAAAACCCCTA-GCTTTCAA  49
      |||||||| ||||||||  || |||||||||||     ||| |||| || 
seq2  ATGTGAAC-AAGATAAG--CCGTACCCCATAAA-----CTAGGCTTCCAG  42

seq1  GCCTCATGGCCGACATCTGTTATCT-CCTGTGTGGG-ATGCATGTCTGTG  97
      ||||||| | ||||||  ||||| | |||||||||| |||||||||| ||
seq2  GCCTCAT-GACGACATTCGTTATTTCCCTGTGTGGGAATGCATGTCT-TG  90

seq1  CTCCGTAATTAAATGTCCTCA-TGTAATTACAGCAAGAGATGGTCCTTCG  146
      |||||||||| || || |||| ||||| |||||| ||||||||| |||||
seq2  CTCCGTAATTTAAAGT-CTCATTGTAA-TACAGC-AGAGATGGTTCTTCG  137

seq1  TGATTTTTTTTGGGTGCACGCCGAATCGGGAATTGGGTGGGGGTTTCCCC  196
      |||  ||||||||  ||||| ||||||||||| |||||||||| ||||||
seq2  TGA--TTTTTTGGTGGCACG-CGAATCGGGAAATGGGTGGGGGGTTCCCC  184

seq1  ACTAGATCTAACATTTGCAATCTGAGTCAAGATTCGAAATAATAATAAGA  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATCT-ACATTTGCAATCTGAGTCAAGATTCGAAATAATAATAAGA  233

seq1  TTCTTTTGCAAGTTGCAGCTGACTTCGAAATTCTGGGGCTCTTCTGGGTA  296
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TTCTTTTGCAAGTTGCAGCTGACTTCGAAATTCTGGAGCTCTTCTGAGTA  283

seq1  TCCCTCAGACTCAGGTCGTAACAGTTTCATGTAGCTCAGGCTATCCTTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGACTCAGGTCGTAACAGTTTCATGTAGCTCAGGCTATCCTTGA  333

seq1  ACTTACTGTTTAGCAGAGGATGACCCAGAACACCTGATCCTCCTGCTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGTTTAGCAGAGGATGACCCAGAACACCTGATCCTCCTGCTTCA  383

seq1  GCCACCAAATGCCACACCTGGCTTATGAGGTGCTAAGGACTGAACCCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAAATGCCACACCTGGCTTATGAGGTGCTAAGGACTGAACCCAGG  433

seq1  GCTTCATGCCTGCTACCAATTGATCTACCTTATTTTCCATAGGTCATTAA  496
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATG-CTGCTACCAATTGATCTACCTTATTTTCCATAGGTCATTAA  482

seq1  GAAAAATGACTCTGAACAGCTGAATAATTTGCCTCAAACACTGCCCTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTCTGAACAGCTGAATAATTTGCCTCAAACACTGCCCTTCA  532

seq1  GTGGGGCTTAGAATTTGACCCTCAGGCCTATCTGTCTCCATTGTCCCACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTTAGAATTTGACCCTCAGGCCTATCTGTCTCCATTGTCCCACT  582

seq1  CCCACTTCCTAAGAGTTAAGAAGAATAAGGAGCTTACCCACAGCCACTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCTAAGAGTTAAGAAGAATAAGGAGCTTACCCACAGCCACTGT  632

seq1  CCCTGGAGAAGGCACGAGAACTCCGCCCGTGTCAAAAATGACTGCTCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGAAGGCACGAGAACTCCGCCCGTGTCAAAAATGACTGCTCTGT  682

seq1  AGCTTCGGCCTCCAGAATGTGTCCAGCGGAGGCCTCCCTGATGCCTGCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGGCCTCCAGAATGTGTCCAGCGGAGGCCTCCCTGATGCCTGCCC  732

seq1  AGGGGATGGTTCAGGGCCGTGGTCCTCCATGCCCAGTGCAGAGTGGAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGGTTCAGGGCCGTGGTCCTCCATGCCCAGTGCAGAGTGGAAGG  782

seq1  CTGGAAAAGTCTTCTTACCCACATGGTGAGATGGAGGCTGTGTGGGGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGTCTTCTTACCCACATGGTGAGATGGAGGCTGTGTGGGGAGA  832

seq1  AGGTTCAGGGCAGCCTGAGGCACGGCTTCTGTCCAGGGTTAGGGTTAGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGGGCAGCCTGAGGCACGGCTTCTGTCCAGGGTTAGGGTTAGGT  882

seq1  TAGGGTAGGGTATCCCTGAGCTGGGTGTCACCCACAGCTCCCGGCTGAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGGGTATCCCTGAGCTGGGTGTCACCCACAGCTCCCGGCTGAGG  932

seq1  TCCAACCAATGCTCAAGCCCCACCCACAGCTGGCTTCAATGACTGTTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCAATGCTCAAGCCCCACCCACAGCTGGCTTCAATGACTGTTCAC  982

seq1  ATGGGGCCTTCACCCTCAACTGCTATCACCACTGAAAGGGGGTTTGAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCTTCACCCTCAACTGCTATCACCACTGAAAGGGGGTTTGAGCC  1032

seq1  CTGACTTTCCTCAGTCCCAACTCACTTGCCTCAGCCCTGTCTTGCTCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCCTCAGTCCCAACTCACTTGCCTCAGCCCTGTCTTGCTCCTG  1082

seq1  AGACCCCAATCTCCTGCCTTCTTCTCTCACTGCAGATGTCTCTTCAGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAATCTCCTGCCTTCTTCTCTCACTGCAGATGTCTCTTCAGGGA  1132

seq1  CCCTGGTGGCTCCCTGCTCCTTCCTCCTTCCTCCCTCATCAGCCAGAGAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTGGCTCCCTGCTCCTTCCTCCTTCCTCCCTCATCAGCCAGAGAA  1182

seq1  TTC  1199
      |||
seq2  TTC  1185

seq1: chr5_121928317_121929385
seq2: B6Ng01-327O23.g_66_1137

seq1  GAATTCTTAGATTGGGTTTCATTCATGTAGCCCAGCTGGCCTGGAATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATTGGGTTTCATTCATGTAGCCCAGCTGGCCTGGAATTTG  50

seq1  TACTATGTAGCCATGCAGGAGGAACCTGATGTAATAAAATTGATTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTAGCCATGCAGGAGGAACCTGATGTAATAAAATTGATTTGGTG  100

seq1  CTATAAAGGATTCACTAAACAATTGCTGAGGAATATTAGGCCACAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGGATTCACTAAACAATTGCTGAGGAATATTAGGCCACAGTAAG  150

seq1  TAGAATCTGGCTCAGGCGGCCCTGCCTGTGCTGTGTCTGGAGATGAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTGGCTCAGGCGGCCCTGCCTGTGCTGTGTCTGGAGATGAGTAT  200

seq1  AAACCCCGGCTTGTTAGAGAAAACTGAACCACACTGAAATTCATGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCGGCTTGTTAGAGAAAACTGAACCACACTGAAATTCATGGTTGC  250

seq1  TGAGGAAGCCTGTTAATGTTTGGTTACCAAGATTGACCTCTGATTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGCCTGTTAATGTTTGGTTACCAAGATTGACCTCTGATTAGGTA  300

seq1  CCAGTTCCAAAACAAGAGGAGATAACCTTAATTTACAACCAGCCATTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCAAAACAAGAGGAGATAACCTTAATTTACAACCAGCCATTCGG  350

seq1  CCCCTCCCCATATCAAAGAACTTATCTCCAATAGGAAGCTCAAGGGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCATATCAAAGAACTTATCTCCAATAGGAAGCTCAAGGGGTCA  400

seq1  GCTCGAGGTCTCTGCTGTCAGTAAGTCTCTGGGGAACCCTGCGTAATGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGGTCTCTGCTGTCAGTAAGTCTCTGGGGAACCCTGCGTAATGCG  450

seq1  GTGCTCGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCT  500

seq1  GAGTTCAAGGCCAGCCAGGTCTACAGAGTGAGTTCCAGGACAACCAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGCCAGGTCTACAGAGTGAGTTCCAGGACAACCAGAGC  550

seq1  TACACAGAGAAATCCTGTCTCGAAAAAACCAAAAACCAAAACAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAATCCTGTCTCGAAAAAACCAAAAACCAAAACAAAACAAA  600

seq1  AAAAAAACAGTGCTGGTGTCCTTAAGTGATGCTGGCACTATCCTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAGTGCTGGTGTCCTTAAGTGATGCTGGCACTATCCTTGTTGT  650

seq1  TTATCCTCAGTCTGCCTAAGAGGCCAGTCTTACAGTCTGCCATCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCAGTCTGCCTAAGAGGCCAGTCTTACAGTCTGCCATCTTTGTT  700

seq1  TAAGTTGTTTAGAGTGTAACCTGTGGCCAGGACCTGGGAGAGGCTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTTAGAGTGTAACCTGTGGCCAGGACCTGGGAGAGGCTTAAAG  750

seq1  ATGGCAGTTTAGGTGGAATTATAGGCCTCAGGCCTGTATAGGATGGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTTAGGTGGAATTATAGGCCTCAGGCCTGTATAGGATGGCAGT  800

seq1  TTCC-TCTCTAAAGTTGCTCCTCTTGTCTGCATTTGTCAGAACTAGTCAT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTAAAGTTGCTCCTCTTGTCTGCATTTGTCAGAACTAGTCAT  850

seq1  GTGCTATTAC-TAAAGGGGTTT-CTCTTCATCAACCTCTAAGTTTGTTTA  897
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GTGCTATTACTTAAAGGGGTTTCCTCTTCATCAACCTCTAAGTTTGTTTA  900

seq1  GGGATTTCTTTCTGGGAAAGTGTATTAATTCCGTAATAGCCAAGGATAGC  947
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGA-TTCTTTCT-GGAAAGTGTATTAATTCCGTAATAGCCAAGGATAGC  948

seq1  C-TTGAACT-CACGACCATGCTCTCTCTGCTTCCAAAGCACTGGGATCAC  995
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACTCCACGACCATGCTCTCTCTGCTTCCAAAGCACTGGGATCAC  998

seq1  TGGCCA-CCACATGTTGAAAGTGCGAT-GCGTGCACT-GTCACAGTAAGT  1042
      |||||| |||||||||| ||||||||| ||||||||| ||| ||||||| 
seq2  TGGCCATCCACATGTTG-AAGTGCGATGGCGTGCACTGGTCCCAGTAAG-  1046

seq1  TAGCTTAGGAGAACCTTTATA-CTGAGC  1069
      ||||| ||||||  ||||||| ||||||
seq2  TAGCTAAGGAGA--CTTTATACCTGAGC  1072