BAC Information

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BAC

Clone NameB6Ng01-327O24
Chromosome5 (Build37)
Map Location 15,155,929 - 15,185,649
singlet/doubletdoublet
Overlap gene4930572O03Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327O24.bB6Ng01-327O24.g
ACCGA115337GA115338
length7031,108
definitionB6Ng01-327O24.b B6Ng01-327O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,155,929 - 15,156,585)(15,184,517 - 15,185,649)
sequence
gaattcagcatttattccctgaaagcaaatcctacctatctctccatgag
atgaggctttgtctcacattaagaactgcagaatgcaatacatcaaaacc
ttgctgatctccatggtggtgatgcacaccacagcctcacggtgaacatc
tacactggcaggtttcagggtatgttgaagtagtccaccatgtcagtgta
acctgcaaagtgccatgagacaatactaatagaaatctgcaggattcctc
cacattagatttcactatggtcttcaatgtcattttgtaaagaaatacta
tgggttcacagttacacacacacacacacacacacacacacaaacatgaa
gaccagaggactttatgggaggattgttctctctactatgtgcattccaa
ggaaaaatttctggtttctaggcttgacagcaatgatgaatacctgctca
accatgtcattaactcatcagctgatcatctaaaccaaggaatttcatat
gctctatatttgtatttatgttccctttctcactctctctctgtctctct
gtttctctgtctgtctctctctttctgtctctctgtctctgtctgtctgt
ttgtctgtttgtctgtctgtctgtctctctctctctctctctctctctct
ctctcgcgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgt
gaattcaccaggaaagaacaaaagcccaaaagacagaggagaagtgttca
tggatgcactagccagttacctctggaagagcagctgcatggattcagga
tgcgcttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagttctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcccaagcaccacagcactgatctccatctgtttttctc
tgactcttaaaacatccttcccaattgaaaaacaaagcacaaaatcatct
taattgccttgccaaaggattggaaaggagcaccactttttgttcagaag
acaacttcagaaaacaaatgagaagcctcaaatgggccaaaagccacaaa
ttgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggagtt
caccagggagaggagctctgactccaaaatagtcacttttccattttgtc
aatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgttc
caggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtat
ccaatgctgataactggcagcagaaactctgggagggtcacatctatgtg
gtgacacaagaagctttctccagggtctagcacactcttaccaaagcctc
ttgcccaggttcgctatctcatctaaatgctcactcgcattaagggacaa
catggtgtaattggaaatggacagacacatttacttatcgttttggccat
aactggacaaggagaaagtctcagctacattccaccaggcccatagcact
ctcagaccaatagaaggatgaaagataggaaaatacacacttcagtgtca
gctgtgggcccagtttccaggagatgggagatggttgttttcctccagtg
ccgagatgatgccctttgggtggggccattttcactcacagttgtagtcc
tgcaggagtctgcttctatggccctttacagttaggcgtgacaacattaa
gaaaaaaaccatcaaccaagccagaagtgatccccgtttgttatttacca
aggataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15155929_15156585
seq2: B6Ng01-327O24.b_48_750

seq1  GAATTCAGCATTTATTCCCTGACGGCAAATCCTACCTATCTCTCCATGAG  50
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GAATTCAGCATTTATTCCCTGAAAGCAAATCCTACCTATCTCTCCATGAG  50

seq1  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100

seq1  TTGTTGATCTCCATGGTGGTGATGCACACCACAGCCTCACGGTGAACATC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCTCCATGGTGGTGATGCACACCACAGCCTCACGGTGAACATC  150

seq1  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200

seq1  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250

seq1  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300

seq1  TGGGTTCACAG--------------ATACACACACACACACAAACATGAA  336
      |||||||||||              | |||||||||||||||||||||||
seq2  TGGGTTCACAGTTACACACACACACACACACACACACACACAAACATGAA  350

seq1  GACCAGAGGACTTTAAGGGAGGATTGTTCTCTCTACTATGTGCATTCCAA  386
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGACTTTATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAA  400

seq1  GGAAAAAATTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCA  436
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCA  450

seq1  ACCATGTCATTAACTCATCAACTAATCATCTAAACCAAGCCATTTCATAA  486
      |||||||||||||||||||| || |||||||||||||||  |||||||| 
seq2  ACCATGTCATTAACTCATCAGCTGATCATCTAAACCAAGGAATTTCATAT  500

seq1  GCTCTATATTTGTATTTATGTTTCCTT------ACTCTCTCTGTCTCTCT  530
      |||||||||||||||||||||| ||||       ||||||||||||||||
seq2  GCTCTATATTTGTATTTATGTTCCCTTTCTCACTCTCTCTCTGTCTCTCT  550

seq1  GTTTCTCTGTCTGTCTCTCTCTTTCTGTCTCTCTGTCTCTGTC-------  573
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  GTTTCTCTGTCTGTCTCTCTCTTTCTGTCTCTCTGTCTCTGTCTGTCTGT  600

seq1  ---TCTG--TCTCTGTC--TCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  616
         ||||  | ||||||  |||||||||||||||||||||||||||||||
seq2  TTGTCTGTTTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTCT------------CTCGTGTGTGTGTCTGTGTGTGTGTCTGTGTTTG  654
      ||||            | ||||||||||| ||||||||||| ||||| ||
seq2  CTCTCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGT  657
      |||
seq2  TGT  703

seq1: chr5_15184517_15185649
seq2: B6Ng01-327O24.g_64_1171 (reverse)

seq1  TTTATCCTTGGTAAATAAACAAAGGGGATCAC-TCTGCTTTGTTTGAATG  49
      ||||||||||||||||||  || ||||||||| ||||  ||| ||| |||
seq2  TTTATCCTTGGTAAATAACAAACGGGGATCACTTCTGGCTTGGTTG-ATG  49

seq1  GTTTTTTCTTAAATGTTGTCACGCTTAACTGTAAAGGGGCCATAAGAAGC  99
      |||||||  | ||||||||||||| |||||||||| ||||||| ||||||
seq2  GTTTTTTTCTTAATGTTGTCACGCCTAACTGTAAA-GGGCCAT-AGAAGC  97

seq1  AAGACTCCCTGAAGGAACTACCAAACTGTGAGTGAAAATGG-CCCACCCA  148
       ||||| |||| ||| |||||  |||||||||||||||||| ||||||||
seq2  -AGACT-CCTGCAGG-ACTAC--AACTGTGAGTGAAAATGGCCCCACCCA  142

seq1  AAGGGCATCATCTCTGGCACTGGAGGAAAACGACCATCTCCCATCTCCTG  198
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  AAGGGCATCATCTC-GGCACTGGAGGAAAACAACCATCTCCCATCTCCTG  191

seq1  GAAACTGGGCCCACAGCTGACACTGAAGTGTGTATTTTCCATCCTTCTAT  248
      ||||||||||||||||||||||||||||||||||||||||          
seq2  GAAACTGGGCCCACAGCTGACACTGAAGTGTGTATTTTCC----------  231

seq1  TTGTGTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCTATGGGCCTGGT  298
           ||||||||||||||||| |||||||||||||||||||||||||||
seq2  -----TATCTTTCATCCTTCTA-TTGGTCTGAGAGTGCTATGGGCCTGGT  275

seq1  GGAATGTAGCTGAGACTTTCTCCTTTTCCAGTTATGGCCAAAACTATAAG  348
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCCAAAACGATAAG  325

seq1  TAAATGTGTCTGTCCATTTCCAATTACACCATGTTGTCCCTTAATGCGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGTCTGTCCATTTCCAATTACACCATGTTGTCCCTTAATGCGAG  375

seq1  TGAGCATTTAGATGAGATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTAGATGAGATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGT  425

seq1  GTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATATATGTGACCCT  498
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATAGATGTGACCCT  475

seq1  CCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAGTGAGAATGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAGTGAGAATGCA  525

seq1  GTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACATCCTTTCCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACATCCTTTCCTTCC  575

seq1  TTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAAATGTTAAAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAAATGGAAAAGTG  625

seq1  ACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTA  698
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTGAACTCCTGCTGGCAGTA  675

seq1  GACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCC  725

seq1  GTTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTG  798
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGCTTCTCATTTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTG  775

seq1  GTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGATTTTGTGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGATTTTGTGCTTT  825

seq1  GTTTTTCAATTTGGAAGGATGTCTTAAGAGTCAGAGAAAAACAGATGGAG  898
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  GTTTTTCAATTGGGAAGGATGTTTTAAGAGTCAGAGAAAAACAGATGGAG  875

seq1  ATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGCCCTGACTCAGTGTGGAG  948
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCTGTGG--TGCTTGGGAACAGAAAGCCCTGACTCAGTGTGGAG  923

seq1  TTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATGACTTTCCACAG  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTCTAGAAGCATTTTGATTAGAACTTAGTAAGAGATGACTTTCCACAG  973

seq1  CCATCCAGCATGGCACCCAGTGTGCATGAAGTGCATCCTGAATCCATGCA  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCATCCAGCATGGCACCCAGTGTGCATGAAGCGCATCCTGAATCCATGCA  1023

seq1  GCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAACACTTCTCCTC  1098
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGCTCTTCCAGAGGTAACTGGCTAGTGCATCCATGAACACTTCTCCTC  1073

seq1  TGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATTC  1133
      || |||||||||| |||||||||||||||||||||
seq2  TGTCTTTTGGGCTTTTGTTCTTTCCTGGTGAATTC  1108