BAC Information

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BAC

Clone NameB6Ng01-328N13
Chromosome5 (Build37)
Map Location 127,877,710 - 128,007,652
singlet/doubletdoublet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N13.bB6Ng01-328N13.g
ACCGA115996GA115997
length3041,137
definitionB6Ng01-328N13.b B6Ng01-328N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,877,710 - 127,878,013)(128,006,529 - 128,007,652)
sequence
agaactgtcttgcttgggggtatgggagctagggctatttccctgatggg
tggagaaacttaaatcagataatggaagcggaaagaaaaactggcttctc
caactgtaaagttaaagcgcataggagctcaggcatgctggattagtgtg
aagtagatggcatcgctgagttctattcatctctggctctctgtctctgt
ctctgtctctgtctctccctctctctccctccctctctctccctctctct
ctctctctctctctctctctctttctctctctctctcactgtgtgtgtgt
gtgt

tccgcggaattctcttctcctccttcttcttcctcttcttcattttcctc
ttcctcttcttcttccttttcttcctcttctcctcctcctccttcttctt
ttccttttcctcctcttcttccttctcctcttcctcctcctctacttctt
ccttcttctccttctcctcttcctccttttcttcttcctcttcctcctcc
ttttcttctcctcttcctcctttttttcttcctcttcctcctcttcttct
cctcttcctcctttttttcttcctcttcctcctccttttcttctctcctt
cctctttctctttcttcccctccccgccccacttgctgttctactccgag
cacctggaacagccactgctgaagaactctgtgctacagacatatgataa
gaggcagaaaaaacaaactgcctacaagtctttctagtttgagtttctga
atatacctacagggctgtggctgtagctcagtgggtagagcacttgcctg
gcattcacagagccctggttcaacccctagcacctcataaaccaagcatg
gaggtgcatacttgtaacccagaacttgggaggtagaggaaggaggatca
taaggtcagagtcatgcttggctatgcagtgagcttaagactagtctggg
atacctaagatctgatcatttggagcctagccttctttgaaggtcttgga
ttaaggacatggtacttggatgccttcctgggtctgtacatgagaccaaa
atcctggaaggggctgttgtttcatggttccatctttggaaatgaggcca
gggcttggatcaaggaccacagtctaagagtaatgggtggtatggaatga
caagctgtgttaatcatgagtcagagtcccctcaaagctccagctttggc
ttcggagttcccacacttgggaactgacatgctaaaggcctgcatgccca
cagcattctgattggttggtgctaccatcttactctggtctgattggcct
ggagcctgtatcactctatcagattttgaataatcaatccatttgtactc
atggtgagtggtagtttcagtatcagtggaattttctttggttggttttt
gcgtgctttctaggtgaattcctaagtttgttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127877710_127878013
seq2: B6Ng01-328N13.b_55_358

seq1  AGAACTGTCTTGCTTGGGGGTATGGGAGCTAGGGCTATTTCCCTGATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTCTTGCTTGGGGGTATGGGAGCTAGGGCTATTTCCCTGATGGG  50

seq1  TGGAGAAACTTAAATCAGATAATGGAAGCGGAAAGAAAAACTGGCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAACTTAAATCAGATAATGGAAGCGGAAAGAAAAACTGGCTTCTC  100

seq1  CAACTGTAAAGTTAAAGCGCATAGGAGCTCAGGCATGCTGGATTAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAAAGTTAAAGCGCATAGGAGCTCAGGCATGCTGGATTAGTGTG  150

seq1  AAGTAGATGGCATCGCTGAGTTCTATTCATCTCTGGCTCTCTGTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGGCATCGCTGAGTTCTATTCATCTCTGGCTCTCTGTCTCTGT  200

seq1  CTCTGTCTCTGTCTCTCCCTCTCTCTCCCTCCCTCTCTCTCCCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTGTCTCTCCCTCTCTCTCCCTCCCTCTCTCTCCCTCTCTCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCACTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCACTGTGTGTGTGT  300

seq1  GTGT  304
      ||||
seq2  GTGT  304


seq1: chr5_128006529_128007652
seq2: B6Ng01-328N13.g_68_1198 (reverse)

seq1  TTTACAACAAAC-TAGGGAATCACTTAGAAAGCACGCAAAAAC--AACAA  47
      |||||||||||| |||| | |||| ||||||||||||||||||  | |||
seq2  TTTACAACAAACTTAGGAATTCACCTAGAAAGCACGCAAAAACCAACCAA  50

seq1  AGAAAA-TCCACTGATTACTTGAAACTTACCACTCA-CATGAGTACAAAT  95
      |||||| |||||||| ||| |||||| ||||||||| |||||||||||||
seq2  AGAAAATTCCACTGA-TAC-TGAAAC-TACCACTCACCATGAGTACAAAT  97

seq1  -GAATGA-TATTCAAAATCTGATAGAGTGATACAGGCT-CAGGCCAATCA  142
       || ||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GGATTGATTATTCAAAATCTGATAGAGTGATACAGGCTCCAGGCCAATCA  147

seq1  GACCAGAGT-AGATGGTAGCACCAACCAATCAGAATGCTGTTGGCATGCA  191
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GACCAGAGTAAGATGGTAGCACCAACCAATCAGAATGCTGTGGGCATGCA  197

seq1  GGCCTTTAGCATGTCAGTT-CCAAGTGTTGGAACTCCGAAGCCAAAGCTG  240
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GGCCTTTAGCATGTCAGTTCCCAAGTGTGGGAACTCCGAAGCCAAAGCTG  247

seq1  GAGCTTTGAGGGGACTCTGACTCATGATTAACACAGCTTGTCATTCCATA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAGGGGACTCTGACTCATGATTAACACAGCTTGTCATTCCATA  297

seq1  CCACCCATTACTCTTAGACTGTGGTCCTTGATCCAAGCCCTGGCCTCATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATTACTCTTAGACTGTGGTCCTTGATCCAAGCCCTGGCCTCATT  347

seq1  TCCAAAGATGGAACCATGAAACAACAGCCCCTTCCAGGATTTTGGTCTCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGATGGAACCATGAAACAACAGCCCCTTCCAGGATTTTGGTCTCA  397

seq1  TGTACAGACCCAGGAAGGCATCCAAGTACCATGTCCTTAATCCAAGACCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGACCCAGGAAGGCATCCAAGTACCATGTCCTTAATCCAAGACCT  447

seq1  TCAAAGAAGGCTAGGCTCCAAATGATCAGATCTTAGGTATCCCAGACTAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGGCTAGGCTCCAAATGATCAGATCTTAGGTATCCCAGACTAG  497

seq1  TCTTAAGCTCACTGCATAGCCAAGCATGACTCTGACCTTATGATCCTCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCTCACTGCATAGCCAAGCATGACTCTGACCTTATGATCCTCCT  547

seq1  TCCTCTACCTCCCAAGTTCTGGGTTACAAGTATGCACCTCCATGCTTGGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCTCCCAAGTTCTGGGTTACAAGTATGCACCTCCATGCTTGGT  597

seq1  TTATGAGGTGCTAGGGGTTGAACCAGGGCTCTGTGAATGCCAGGCAAGTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGTGCTAGGGGTTGAACCAGGGCTCTGTGAATGCCAGGCAAGTG  647

seq1  CTCTACCCACTGAGCTACAGCCACAGCCCTGTAGGTATATTCAGAAACTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCACTGAGCTACAGCCACAGCCCTGTAGGTATATTCAGAAACTC  697

seq1  AAACTAGAAAGACTTGTAGGCAGTTTGTTTTTTCTGCCTCTTATCATATG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAAGACTTGTAGGCAGTTTGTTTTTTCTGCCTCTTATCATATG  747

seq1  TCTGTAGCACAGAGTTCTTCAGCAGTGGCTGTTCCAGGTGCTCGGAGTAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCACAGAGTTCTTCAGCAGTGGCTGTTCCAGGTGCTCGGAGTAG  797

seq1  AACAGCAAGTGGGGCGGGGAGGGGAAGAAAGAGAAAGAGGAAGGAGAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGTGGGGCGGGGAGGGGAAGAAAGAGAAAGAGGAAGGAGAGAA  847

seq1  GAAAAGGAGGAGGAAGAGGAAGAAAAAAAGGAGGAAGAGGAGAAGAAGAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGGAGGAAGAGGAAGAAAAAAAGGAGGAAGAGGAGAAGAAGAG  897

seq1  GAGGAAGAGGAAGAAAAAAAGGAGGAAGAGGAGAAGAAAAGGAGGAGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAAGAAAAAAAGGAGGAAGAGGAGAAGAAAAGGAGGAGGAA  947

seq1  GAGGAAGAAGAAAAGGAGGAAGAGGAGAAGGAGAAGAAGGAAGAAGTAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGAAAAGGAGGAAGAGGAGAAGGAGAAGAAGGAAGAAGTAGA  997

seq1  GGAGGAGGAAGAGGAGAAGGAAGAAGAGGAGGAAAAGGAAAAGAAGAAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGAGGAGAAGGAAGAAGAGGAGGAAAAGGAAAAGAAGAAGG  1047

seq1  AGGAGGAGGAGAAGAGGAAGAAAAGGAAGAAGAAGAGGAAGAGGAAAATG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAGAAGAGGAAGAAAAGGAAGAAGAAGAGGAAGAGGAAAATG  1097

seq1  AAGAAGAGGAAGAAGAAGGAGGAGAAGAGAATTC  1124
      ||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGAAGAAGAAGGAGGAGAAGAGAATTC  1131


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