BAC Information

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BAC

Clone NameB6Ng01-329D22
Chromosome5 (Build37)
Map Location 15,004,448 - 15,220,106
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329D22.bB6Ng01-329D22.g
ACCGA116265GA116266
length1,072804
definitionB6Ng01-329D22.b B6Ng01-329D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,004,448 - 15,005,522)(15,219,306 - 15,220,106)
sequence
gaattctaaaaactcagagacctcgagaggagggtaaattgacttaattt
tctgctttttactattttttatactattttttgtatctttacattttggg
agttgacaattaaatccatgatataagatctgtgtctttgcaaaaaactt
tactgcatatgtacacattggttgtttgtccaatcttatgcgtggtggcc
agcagtagtcagtgccactcagcaacggcacatgtggcttcccacactcc
acctggcttagaacctttgcaggcccctagtgtgctgccatgtttctgtg
agttcttctatgcttcagtcctgttgtgtctggaagacactgtttccttg
gtgtgagccttcctacaggctcctacacacttcctactgcctcttctcca
gagcttcctaagccccgaggcaagggatctgatgaagacaactcatttag
ggcccaatgttccaagttctttcactctttgcacatcatccagctgtggg
ttctgcactagaaccttctgcaagaggaagattctctgatgatggctgag
caagtcattgaaccaaggatgcagcaggattttgttgagtaattttattt
tactaagttcctttagcagaacattagcatttggttttaccctagcttta
actagtctcaggattttggctacccaagcattgtcaggcatggatcctat
ctcgtagagtgagccttaaattgaatcagatggtggctggttatgcccat
tccttttgtactatggatccactagcatatcacgcaggctggtcatcact
gtagaatgaatggtttgtagctgggttgatgtttgcctttctgctctggt
agcaagcagagtaccttacagatcatgatcaccagtcagcagggtgaaag
ctctagttagacaccagcatgacttctccagtatgtaggtgttgtcttca
gcgatagggctttaccatctagattaactaatatttcttaaatattgatc
tgagcttagtaaaatttacaaaatacatgctttaatttacagtttttgta
taaaagatagcatattatttct
gaattcttatcaacctttgtgatgtcaccagtgttgtagtgacaacaaac
tcactgagatttctcagtcagaggctggacattgcagtgatggccttgtt
tgcccgactctgcagactttttcagagagccaatgtggatgggagagaga
ccagagaggggaggaaggatgctgaccttccatctgagagtaatgaagga
cgacggaggtggccttggcaaatgtggagtaagtcctgggaagtggatgt
tgagcttcctgttaggggtggcctgagcttgcctttccagtaatgtggaa
ctggagactctgggtagcgaaaacatttccatggttatcacaattcttga
acatcaaggatttcagaacagcacttttccatcccctaaggcaggcgttg
gcaaggtcaaagctgttatgctatgaacttcaagtctttacttgcactgg
gtattgtgggtgttacatggggacagaatgagaccatcaggagtgacagc
gggtctaagcaatgccagtttcggggagggaaatcctgcacttcagtcca
tggctccttttagctcctgtagttatctgacattagtgacagggagagaa
tggtgctccagaccatgacctcatgttctcagaactactctgacctcctg
tttgtgacagttcctaccttacctttctttatcaccaattgtggttggca
ggcatttctatgctgtaaacaaagaactatcagttgatacacccagacag
agggggattctattgctacttctggggtgtttggtgtttcgggggggggg
ggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15004448_15005522
seq2: B6Ng01-329D22.b_43_1113

seq1  AATTCTAACAACTCAGAGTCCTCGAGAGGAGGGTAAATTGACTTAATTTT  50
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  AATTCTAAAAACTCAGAGACCTCGAGAGGAGGGTAAATTGACTTAATTTT  50

seq1  CTGCTTTTTACTATTTTTTATACTATTTTTTGTATCTTTACATTTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTACTATTTTTTATACTATTTTTTGTATCTTTACATTTTGGGA  100

seq1  GTTGACAATTAAAGCCATGATATAAGATCAGTGTCTTTGCAAAAAACTTT  150
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  GTTGACAATTAAATCCATGATATAAGATCTGTGTCTTTGCAAAAAACTTT  150

seq1  ACTGCATATGTACACATTGGTTGTTTGTCCAATCTTATGCGTGGTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATATGTACACATTGGTTGTTTGTCCAATCTTATGCGTGGTGGCCA  200

seq1  GCAGTAGTCAGTGCCACTCAGCAACGGCACATGTGGCTTCCCACACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTCAGTGCCACTCAGCAACGGCACATGTGGCTTCCCACACTCCA  250

seq1  CCTGGCTTAGAACCTTTTCAGGCCCCTAGTGTGCTGCCATGTTTCTGTAA  300
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  CCTGGCTTAGAACCTTTGCAGGCCCCTAGTGTGCTGCCATGTTTCTGTGA  300

seq1  GTTCTTCTATGCTTCAGTCCTGTTGTGTCTGGAAGACACTGTTTCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTATGCTTCAGTCCTGTTGTGTCTGGAAGACACTGTTTCCTTGG  350

seq1  TGTGAGCCTTCCTACAGGCTCCTACACACTTCCTACTGCCTCTTCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCTTCCTACAGGCTCCTACACACTTCCTACTGCCTCTTCTCCAG  400

seq1  AGCTTCCTAAGCCCCGAGGCAAGGGATCTGATGAAGACATCTCATTTAGG  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTTCCTAAGCCCCGAGGCAAGGGATCTGATGAAGACAACTCATTTAGG  450

seq1  GCCCAATGTTCCAAGTTCTTTCACTCTTTGCACATCATCCAGCTGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGTTCCAAGTTCTTTCACTCTTTGCACATCATCCAGCTGTGGGT  500

seq1  TCTGCACTAGAACCTTCTGCAAGAGGAAGATTCTCTGATGATGGATGAGC  550
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGCACTAGAACCTTCTGCAAGAGGAAGATTCTCTGATGATGGCTGAGC  550

seq1  AAGTCATTGAACCAAGGATGCAGCAGGATTTTGTTGAGTCATTTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTCATTGAACCAAGGATGCAGCAGGATTTTGTTGAGTAATTTTATTTT  600

seq1  ACTAAGTTCCTTTAGCAGAACATTAGCATTTGGTTTTACCCTAGCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTCCTTTAGCAGAACATTAGCATTTGGTTTTACCCTAGCTTTAA  650

seq1  CTAGTCTCAGGATTTTGGCTACCCAAGCATTGTCAGGCATGGATCCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCAGGATTTTGGCTACCCAAGCATTGTCAGGCATGGATCCTATC  700

seq1  TCGTAGAGTGAGCCTTAAATTGAATCAGATGGTGGCTGGTTATGCCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGAGTGAGCCTTAAATTGAATCAGATGGTGGCTGGTTATGCCCATT  750

seq1  CCTTTTGTACTATGGATCCACTATCATATCAAGCAGGCTGGTCATCACTG  800
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CCTTTTGTACTATGGATCCACTAGCATATCACGCAGGCTGGTCATCACTG  800

seq1  TAGAATGAATGGTTTGTAGCTGGGTTGATGTTTGCCTTTCTGCTCTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAATGGTTTGTAGCTGGGTTGATGTTTGCCTTTCTGCTCTGGTA  850

seq1  GCAAGCAGAGTACCTTACAGATCATGATCACCAGTCAGCAGGGGTGAAAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAAGCAGAGTACCTTACAGATCATGATCACCAGTCAGCA-GGGTGAAAG  899

seq1  CTCTAGTTAGACACCAGCATGACTTCTCCAGTATGTAGGTGTTGTCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTAGACACCAGCATGACTTCTCCAGTATGTAGGTGTTGTCTTCA  949

seq1  GCGATAGGGCTTTACCATCTAGATTAACTAATATTTCTTAAAATATTGAT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCGATAGGGCTTTACCATCTAGATTAACTAATATTTCTT-AAATATTGAT  998

seq1  CTGAGCTTAGTAAAATTTACAAAATAACATGCTTTAAATTACAAGGTTTG  1050
      ||||||||||||||||||||||||| ||||||||||| |||||   ||||
seq2  CTGAGCTTAGTAAAATTTACAAAAT-ACATGCTTTAATTTACAGTTTTTG  1047

seq1  TATAAAAAGATAGTATATTATTTCT  1075
      ||| ||||||||| |||||||||||
seq2  TAT-AAAAGATAGCATATTATTTCT  1071

seq1: chr5_15219306_15220106
seq2: B6Ng01-329D22.g_65_865 (reverse)

seq1  CCCCCCCCACCCCCGAAACACCAAACACCCCAGAAGTAGCAATAGAATCC  50
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCCCCCCCGAAACACCAAACACCCCAGAAGTAGCAATAGAATCC  50

seq1  CCCTCTGTCTGGGTGTATCAACTGATAGTTCTTTGTTTACAGCATAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTCTGGGTGTATCAACTGATAGTTCTTTGTTTACAGCATAGAAA  100

seq1  TGCCTGCCAACCACAATTGGTGATAAAGAAAGGTAAGGTAGGAACTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCAACCACAATTGGTGATAAAGAAAGGTAAGGTAGGAACTGTCA  150

seq1  CAAACAGGAGGTCAGAGTAGTTCTGAGAACATGAGGTCATGGTCTGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGAGGTCAGAGTAGTTCTGAGAACATGAGGTCATGGTCTGGAGC  200

seq1  ACCATTCTCTCCCTGTCACTAATGTCAGATAACTACAGATAACT-ACAGG  249
      ||||||||||||||||||||||||||||||||||||||  | || | |||
seq2  ACCATTCTCTCCCTGTCACTAATGTCAGATAACTACAG-GAGCTAAAAGG  249

seq1  AGCCATGGACTGAAGTGCAGGATTTCCCTCCCCCAAACTGGCATTGCTTA  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCATGGACTGAAGTGCAGGATTTCCCTCCCCGAAACTGGCATTGCTTA  299

seq1  GACCCGCTGTCACTCCTGATGGTCTCATTCTGTCCCCATGTAACACCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGCTGTCACTCCTGATGGTCTCATTCTGTCCCCATGTAACACCCAC  349

seq1  AATACCCAGTGCAAGTAAAGACTTGAAGTTCATAGCATAACAGCTTTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCAGTGCAAGTAAAGACTTGAAGTTCATAGCATAACAGCTTTGAC  399

seq1  CTTGCCAACGCCTGCCTTAGGGGATGGAAAAGTATTGTTCTGAAATCCTT  449
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  CTTGCCAACGCCTGCCTTAGGGGATGGAAAAGTGCTGTTCTGAAATCCTT  449

seq1  GATGTTCAAGAATTGTGATAACCATGGAAATGTTTTCACTACCCAGAGTC  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGTTCAAGAATTGTGATAACCATGGAAATGTTTTCGCTACCCAGAGTC  499

seq1  TCCAGTTCCACATTACTGGAAAGGCCACCTCAGGCCACCCCTACCAGGAA  549
      ||||||||||||||||||||||||| | ||||||||||||||| ||||||
seq2  TCCAGTTCCACATTACTGGAAAGGCAAGCTCAGGCCACCCCTAACAGGAA  549

seq1  GCTCAACATCCACTTCCCAGGACTTACTCCACATTCGCCAAGTCCACCTC  599
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  GCTCAACATCCACTTCCCAGGACTTACTCCACATTTGCCAAGGCCACCTC  599

seq1  CTTCGTCCTTCATTACTCTCAGATGGAAGGTCAGCATCCTTCCTCCCCTC  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGTCCTTCATTACTCTCAGATGGAAGGTCAGCATCCTTCCTCCCCTC  649

seq1  TCTGGTCTCTCTCCCATCCACATTGGCTCTCTGAAAAAGTCTGCAGAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGGTCTCTCTCCCATCCACATTGGCTCTCTGAAAAAGTCTGCAGAGTC  699

seq1  GGGCAAACAAGGCCATCACTGCAATGTCCAGCCTCTGACTGAGAAATCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACAAGGCCATCACTGCAATGTCCAGCCTCTGACTGAGAAATCTC  749

seq1  AGTGAGTTTGTTGTCACTACAACACTGGTGACATCACAGAGGTTGCTAAG  799
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGTGAGTTTGTTGTCACTACAACACTGGTGACATCACAAAGGTTGATAAG  799

seq1  AA  801
      ||
seq2  AA  801