BAC Information

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BAC

Clone NameB6Ng01-329I13
Chromosome5 (Build37)
Map Location 12,709,609 - 12,710,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I13.bB6Ng01-329I13.g
ACCGA116471GA116472
length1411,110
definitionB6Ng01-329I13.b B6Ng01-329I13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agagagtaatccatggctccagatacatatatagcagaggatggcattgt
ctgacatcaatcagagtggaggcccttggttctgtggagatttgatgctc
cagtgtagggagatgttgggcatgagagggtgggagggtgg

gaattcagatctcctggttaagcctaacccttggccacatgatagatact
caaatgagtcccactgaaatctttaaacctagcaaagcatgtgcaaatgt
ttgactcatctttgattagtaaaagcatttaaaacttgattcttgaattg
taaggacaaacatagttaagtagctcttttatcttaatgtgggaagagat
tagagattcatctgttatatttatagccacacacttgaaaagcagaaaaa
tttttagatgtttcttctacattagtgaaagtgttaatatcccaagattt
tctatccaagtttcctactgggtaaaccccatgtaaactccaaactatga
agagttctaatgatatctgtataggtctaatctaatcgcacgagctctgt
agaaacagaattgttccctgttggtttgagaaagaaactcaaaaatatat
tccaaagttgaggagggtttcaagtgataaacatcattgatagttgcttc
tgcatctttttagttaaccatgtttttttctctaagcatattttatatat
ttttaaacatttattgacttatatatgttgaatttttctaatctgaggaa
taacaactttaccatggtagatgatctttttgagttctttctgagttcag
ttttccaagggtttttattgtttttgttttagattttaacaaatttgttt
cattccctatttccctatcctcccaccaaaccatatgctgagctgaacaa
tggcaatggtaaactaaaataggcagaagaaagcacacaaggtctcaacc
caacacaagtagtttactggaaatatctgtgtttatgttaaagggatact
gacctgtagttttataaatttgttatgctttcaattgactttggtattag
aacaatactagcttcatggaagtgtttaagtgctctatttctatttttta
ggaataattaaggattatagttgtagatgttattttaatagttccttaga
acttctctgtaaatccatcgggacctaggctttttagtgagaggttctta
tttagcatttgattctcttatttgtaatgtggtcttggttaagatgtata
tccttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12709609_12710720
seq2: B6Ng01-329I13.g_68_1177

seq1  GAATTCAGATCTCCTGGTTAAGCCTAACCCTTGGCCACATGATAGATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCTCCTGGTTAAGCCTAACCCTTGGCCACATGATAGATACT  50

seq1  CAAATGAGTCCCACTGAAATCTTTAAACCTAGCAAAGCATGTGCAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTCCCACTGAAATCTTTAAACCTAGCAAAGCATGTGCAAATGT  100

seq1  TTGACTCATCTTTGATTAGTAAAAGCATTTAAAACTTGATTCTTGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCATCTTTGATTAGTAAAAGCATTTAAAACTTGATTCTTGAATTG  150

seq1  TAAGGACAAACATAGTTAAGTAGCTCTTTTATCTTAATGTGGGAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAAACATAGTTAAGTAGCTCTTTTATCTTAATGTGGGAAGAGAT  200

seq1  TAGAGATTCATCTGTTATATTTATAGCCACACACTTGAAAAGCAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTCATCTGTTATATTTATAGCCACACACTTGAAAAGCAGAAAAA  250

seq1  TTTTTAGATGTTTCTTCTACATTAGTGAAAGTGTTAATATCCCAAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGATGTTTCTTCTACATTAGTGAAAGTGTTAATATCCCAAGATTT  300

seq1  TCTATCCAAGTTTCCTACTGGGTAAACCCCATGTAAACTCCAAACTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCAAGTTTCCTACTGGGTAAACCCCATGTAAACTCCAAACTATGA  350

seq1  AGAGTTCTAATGATATCTGTATAGGTCTAATCTAATCGCACGAGCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTAATGATATCTGTATAGGTCTAATCTAATCGCACGAGCTCTGT  400

seq1  AGAAACAGAATTGTTCCCTGTTGGTTTGAGAAAGAAACTCAAAAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAATTGTTCCCTGTTGGTTTGAGAAAGAAACTCAAAAATATAT  450

seq1  TCCAAAGTTGAGGAGGGTTTCAAGTGATAAACATCATTGATAGTTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTTGAGGAGGGTTTCAAGTGATAAACATCATTGATAGTTGCTTC  500

seq1  TGCATCTTTTTAGTTAACCATGTTTTTTTCTCTAAGCATATTTTATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTTTTAGTTAACCATGTTTTTTTCTCTAAGCATATTTTATATAT  550

seq1  TTTTAAACATTTATTGACTTATATATGTTGAATTTTTCTAATCTGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATTTATTGACTTATATATGTTGAATTTTTCTAATCTGAGGAA  600

seq1  TAACAACTTTACCATGGTAGATGATCTTTTTGAGTTCTTTCTGAGTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTTTACCATGGTAGATGATCTTTTTGAGTTCTTTCTGAGTTCAG  650

seq1  TTTTCCAAGGGTTTTTATTGTTTTTGTTTTAGATTTTAACAAATTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAGGGTTTTTATTGTTTTTGTTTTAGATTTTAACAAATTTGTTT  700

seq1  CATTCCCTATTTCCCTATCCTCCCACCAAACCATATGCTGAGCTGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTATTTCCCTATCCTCCCACCAAACCATATGCTGAGCTGAACAA  750

seq1  TGGCAATGGTAAACTAAAATAGGCAGAAGAAAGCACACAAGGTCTCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGGTAAACTAAAATAGGCAGAAGAAAGCACACAAGGTCTCAACC  800

seq1  CAACACAAGTAGTTTACTGGAAATATCTGTGTTTATGTT-AAGGGATACT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAACACAAGTAGTTTACTGGAAATATCTGTGTTTATGTTAAAGGGATACT  850

seq1  GACCTGTAGTTTTATAAATTTGTTATGCTTTCAATTGACTTTGGTATTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAGTTTTATAAATTTGTTATGCTTTCAATTGACTTTGGTATTAG  900

seq1  AACAATACTAGCTTCATGGAAGGTGTTTAAAGTGCTCTATTTCTATTTTT  949
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  AACAATACTAGCTTCATGGAA-GTGTTT-AAGTGCTCTATTTCTATTTTT  948

seq1  TAGGAATAATTTAAGGATTATAGTTGTAGATGTTATTT--ATAAGTCCCT  997
      ||||||||| ||||||||||||||||||||||||||||  |||  ||| |
seq2  TAGGAATAA-TTAAGGATTATAGTTGTAGATGTTATTTTAATAGTTCCTT  997

seq1  AGAACTCCTCTGTAAATCCATCGGGACCTAGGCTATTTTAGTTGAGAAGT  1047
      |||||| ||||||||||||||||||||||||||| |||||| ||||| ||
seq2  AGAACTTCTCTGTAAATCCATCGGGACCTAGGCT-TTTTAG-TGAGAGGT  1045

seq1  TCTTTATTAGCATTTTGATCTCTTTATTTGTTATGTGGTCTTGTTTAGAT  1097
      ||||  |||||||||   |||| |||||||| ||||||||||| |||   
seq2  TCTTATTTAGCATTTGATTCTC-TTATTTGTAATGTGGTCTTGGTTAAGA  1094

seq1  TGTATAT-CTTTTCTT  1112
      ||||||| ||||||||
seq2  TGTATATCCTTTTCTT  1110


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