BAC Information

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BAC

Clone NameB6Ng01-330D02
Chromosome5 (Build37)
Map Location 68,734,286 - 68,839,299
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330D02.bB6Ng01-330D02.g
ACCGA116940GA116941
length4711,123
definitionB6Ng01-330D02.b B6Ng01-330D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,838,842 - 68,839,299)(68,734,286 - 68,735,414)
sequence
gaattccaggaggtcaggattattaagggttatttcagtggctccattct
tgcagttagaatgaatataatttggaagtgttttaaaatacagaggcagt
aaatgcatccagagtagctttctataaccaaatgaaacttattcaatgtg
aacagagagtaataatattcttattcttcaaaggtttcaaaattttcgtt
acatttacctgtgttctgtggagcagtggttgtgttaaacattcatatcc
tcttacaaagcaaactccaaggcaattttgaaggctcttggtctcataat
gttttgttggggctgtttgtgttccttacaggccctgtgtatgtatatat
tatgggttttttgtgtgtgttttgtgcttttatggaataggtgtgtatat
atacatacatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatata
gaattctgttctgctgagaaaagacttagatggcagacatcctgtctgta
ctggtcagatggggccttgtctatgatttgcaagttgttgctactgccaa
gaaggaagtttgggctcttgtatcatgagattattgcacctgttgttcca
ggaatccacgagacccagagaggagagtaacacatcacgctggaggtaga
tgggaagtggaagcagccttgcaaagctccctccaagctgatcagagcac
tggcttttgacaaaagcagcccccatgtcctgcttcagttttagtgcatg
tctttaatacagtgtacctgcatgttacatacatcctgtgtaatattagt
gctctgcaacactgagctcagatctatccctcccatcatccatgatacga
tcacgttttagctttacatgtgttgtcagtccatgcattttaaacactat
ttttgtgtcaggcatttgtctttcagtgtgagtaacagtaagaggaaaga
cctcaggtgtgatgctatgcacttgaatctcagcactcaggacactgagg
aaggagggtcctgagtctgaggccagcttgggctacctagtgaggcatgt
ttaaaaacaaggcatgagactggggggatggctcagtggttaagagcact
agctgctcttccaaaggacccaggttagtgtctacatggcagctcacagc
tgtttagaattccaattctagggataccaggcatgcaggcaaaacaccaa
aatacataaatattattttaaatttaaaaaagaaaaatatgtttattttc
atgttatgtcctttatttctttatgagacttatgtttttactggttttat
tccttctgatgtaagtattttaataacatttctataaaatatatcttctg
atagaaaaaaaaggatagccttagataagtgtttaggaacacagttgggg
ctagaacttgtttgggttttagtgtacgtctcaagatgtctcagaagcag
aaatccaacacacatttttgaaaacagaaaagtaagtcaataaaatctct
gtaaaatattgaaatttcatatttctggaaagagattttatatagctaca
tatttggggagaaatattgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68838842_68839299
seq2: B6Ng01-330D02.b_43_500 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  GTATGTATATATACACACCTATTCCATAAAAGCACAAAACACACACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATATACACACCTATTCCATAAAAGCACAAAACACACACAAAA  100

seq1  AACCCATAATATATACATACACAGGGCCTGTAAGGAACACAAACAGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAATATATACATACACAGGGCCTGTAAGGAACACAAACAGCCCC  150

seq1  AACAAAACATTATGAGACCAAGAGCCTTCAAAATTGCCTTGGAGTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACATTATGAGACCAAGAGCCTTCAAAATTGCCTTGGAGTTTGCT  200

seq1  TTGTAAGAGGATATGAATGTTTAACACAACCACTGCTCCACAGAACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAGGATATGAATGTTTAACACAACCACTGCTCCACAGAACACAG  250

seq1  GTAAATGTAACGAAAATTTTGAAACCTTTGAAGAATAAGAATATTATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTAACGAAAATTTTGAAACCTTTGAAGAATAAGAATATTATTAC  300

seq1  TCTCTGTTCACATTGAATAAGTTTCATTTGGTTATAGAAAGCTACTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTCACATTGAATAAGTTTCATTTGGTTATAGAAAGCTACTCTGG  350

seq1  ATGCATTTACTGCCTCTGTATTTTAAAACACTTCCAAATTATATTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTACTGCCTCTGTATTTTAAAACACTTCCAAATTATATTCATTC  400

seq1  TAACTGCAAGAATGGAGCCACTGAAATAACCCTTAATAATCCTGACCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAAGAATGGAGCCACTGAAATAACCCTTAATAATCCTGACCTCC  450

seq1  TGGAATTC  458
      ||||||||
seq2  TGGAATTC  458

seq1: chr5_68734286_68735414
seq2: B6Ng01-330D02.g_69_1191

seq1  GAATTCTGTTCTGCTGAGAAAAGACTTAGATGGCAGACATCCTGTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGCTGAGAAAAGACTTAGATGGCAGACATCCTGTCTGTA  50

seq1  CTGGTCAGATGGGGCCTTGTCTATGATTTGCAAGTTGTTGCTACTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGATGGGGCCTTGTCTATGATTTGCAAGTTGTTGCTACTGCCAA  100

seq1  GAAGGAAGTTTGGGCTCTTGTATCATGAGATTATTGCACCTGTTGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTTTGGGCTCTTGTATCATGAGATTATTGCACCTGTTGTTCCA  150

seq1  GGAATCCACGAGACCCAGAGAGGAGAGTAACACATCACGCTGGAGGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCACGAGACCCAGAGAGGAGAGTAACACATCACGCTGGAGGTAGA  200

seq1  TGGGAAGTGGAAGCAGCCTTGCAAAGCTCCCTCCAAGCTGATCAGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGGAAGCAGCCTTGCAAAGCTCCCTCCAAGCTGATCAGAGCAC  250

seq1  TGGCTTTTGACAAAAGCAGCCCCCATGTCCTGCTTCAGTTTTAGTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGACAAAAGCAGCCCCCATGTCCTGCTTCAGTTTTAGTGCATG  300

seq1  TCTTTAATACAGTGTACCTGCATGTTACATACATCCTGTGTAATATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATACAGTGTACCTGCATGTTACATACATCCTGTGTAATATTAGT  350

seq1  GCTCTGCAACACTGAGCTCAGATCTATCCCTCCCATCATCCATGATACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAACACTGAGCTCAGATCTATCCCTCCCATCATCCATGATACGA  400

seq1  TCACGTTTTAGCTTTACATGTGTTGTCAGTCCATGCATTTTAAACACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTTTAGCTTTACATGTGTTGTCAGTCCATGCATTTTAAACACTAT  450

seq1  TTTTGTGTCAGGCATTTGTCTTTCAGTGTGAGTAACAGTAAGAGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTCAGGCATTTGTCTTTCAGTGTGAGTAACAGTAAGAGGAAAGA  500

seq1  CCTCAGGTGTGATGCTATGCACTTGAATCTCAGCACTCAGGACACTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTGTGATGCTATGCACTTGAATCTCAGCACTCAGGACACTGAGG  550

seq1  AAGGAGGGTCCTGAGTCTGAGGCCAGCTTGGGCTACCTAGTGAGGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTCCTGAGTCTGAGGCCAGCTTGGGCTACCTAGTGAGGCATGT  600

seq1  TTAAAAACAAGGCATGAGACTGGGGGGATGGCTCAGTGGTTAAGAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAAGGCATGAGACTGGGGGGATGGCTCAGTGGTTAAGAGCACT  650

seq1  AGCTGCTCTTCCAAAGGACCCAGGTTAGTGTCTACATGGCAGCTCACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCTTCCAAAGGACCCAGGTTAGTGTCTACATGGCAGCTCACAGC  700

seq1  TGTTTAGAATTCCAATTCTAGGGATACCAGGCATGCAGGCAAAACACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAATTCCAATTCTAGGGATACCAGGCATGCAGGCAAAACACCAA  750

seq1  AATACATAAATATTATTTTAAATTTAAAAAAGAAAAATATGTTTATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATATTATTTTAAATTTAAAAAAGAAAAATATGTTTATTTTC  800

seq1  ATGTTATGTCCTTTATTTCTTTATGAGACTTATGTTTTTACTGGTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTCCTTTATTTCTTTATGAGACTTATGTTTTTACTGGTTTTAT  850

seq1  TCCTTCTGATGTAAGTATTTTAATAACATTTCTATTAAAATATATCTTCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTTCTGATGTAAGTATTTTAATAACATTTCTA-TAAAATATATCTTCT  899

seq1  GATAGAAAAAAAAAGATAGCCTTAGATAAGTGTTTAGGAACACAGTTGGG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAAAAAAGGATAGCCTTAGATAAGTGTTTAGGAACACAGTTGGG  949

seq1  GCTAGAACTTGTTTGGGGTTTTTAGTGTACCTCTTCAAGATGTCTCAGGA  1000
      |||||||||||||||||  ||||||||||| || ||||||||||||| ||
seq2  GCTAGAACTTGTTTGGG--TTTTAGTGTACGTC-TCAAGATGTCTCA-GA  995

seq1  AGCAGGAAACCCACACACATTTTTGAAAACAG-AAAGTAAGTCAATATAT  1049
      ||||| || || |||||||||||||||||||| |||||||||||||| | 
seq2  AGCAGAAATCCAACACACATTTTTGAAAACAGAAAAGTAAGTCAATAAAA  1045

seq1  CCTCCTGTTAAAATAATTGAATTTCCATAATTTCTTTGATAGAGTATTTA  1099
       || ||| |||||| |||||| || ||| ||||| | || ||||  ||||
seq2  TCT-CTG-TAAAAT-ATTGAAATTTCAT-ATTTC-TGGAAAGAGATTTTA  1090

seq1  TATAGCTACATATTTGGGGAGATA---TGAAGG  1129
      |||||||||||||||||||||| |   ||||||
seq2  TATAGCTACATATTTGGGGAGAAATATTGAAGG  1123