BAC Information

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BAC

Clone NameB6Ng01-330H12
Chromosome5 (Build37)
Map Location 49,338,763 - 49,390,806
singlet/doubletdoublet
Overlap geneLOC100041668
Upstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330H12.bB6Ng01-330H12.g
ACCGA117122GA117123
length939966
definitionB6Ng01-330H12.b B6Ng01-330H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,389,868 - 49,390,806)(49,338,763 - 49,339,728)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgaat
ttctggagtccaccttcttaagttcttctagctcttgtttcaaagggaag
cgtatcaaacacattactgcatcctatgatggatgtctttgtatgttatt
gctgtggctccactttctcttctcgcaggttctgctctgcatctcgaaat
tccttccaatgcctaaattataattaggcttttcccatacatttaatgag
aaactcttttcctgacaattcatttaccatgttatgaaagtttagatctt
acaatcttagtgctcaagtggcttgaaactcagtaaaagactggcatgaa
caaaattttatttgttcagatagtggcaaagcccaggtggcaattctgtg
cttggtatggcacttaatttgacatgtcattaggaatccctttaatctct
tagctctggcctcctcactaatggatttattttcaggccacatgtggtgc
taggttactgcagatatacctgcctcacatcctgctgcagtatatctcag
tggggtgtatttcctgtacagagaccccttcacagactcctcatgccttt
ccatcctttttgtacaatgtgtatagcacacacttggccatgttcctcct
gagtcatgagtcatgcactgcaccgaagacccctattggagttacccact
agtaatgattgtaaaagatcaagtcctataacaatgcactataatgctga
tatttggaggcaaaaaggatgctggaaacaaaagaaacaagggaaagaat
ataaattagaagaaaagaatggaaccccagtgaatatatagtaggtgttc
caaagctacatgatgttttttaatgagattttaccccagtacaggggaat
gccagggtcagaagcagagtgggtgggtttgggggagta

gaattcatcgctggcattctagggtctttagtttaacaatagatggttat
aggacctcttacatgtagatggcaaaggtatagatgtcttctttgttccc
ccctctcagaagtctgacgaaagcataagtctgctgttgggtattccaag
gctttacattgggaagaaaactgaatgactgtgtatattatgtacatgag
gatactgttctgaataatgtacagaggaaacaacatctaacaaaatcacg
atacagcaagcaaactactgtatgttcttatatcttcactaacctattct
ttaagtcacagcttgcatgtagcatttacacatacacacatacacgtaca
cttcatatcataaaaaactctctatcttcccatttcttttggaacgtctt
aatacatttgtattttctaacttgattagtgtgtgtttattttggtagga
ttaaaatggaacttataccagaactgttcttatttttttttttttgcaca
gtcatttctagtatctttaatatgagtctgtccttgctttgatttttttt
tttaaagttaagtgtgagcattaaacaagagtttggtttttccaggttcc
attcttgggggtgttatgggacttcttatgacctggcgaggtttgtgtcc
catggacagaccaagaactacactcttgtcataaatgctcttacactcat
ctctgtattttaaatacaaatgggtgatatagaccttctctggaagcatc
cagtaattgaaagtcttgcagcacataaaatattcttgccctatcacagt
gtaattgatgacagtacacaataacatttttcattttatctgaaggccac
gtcctaaacaagttattattaatgttctggagacagaatgcatcatttcc
ttcaatgaccagacgtggagttacatgttttctcttattcttatttatcc
aatgcgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49389868_49390806
seq2: B6Ng01-330H12.b_45_983 (reverse)

seq1  TACTCCCC--AACCCACCCACTCCTGCTTCCTGACCCTGGCATTCCCCTG  48
      ||||||||  |||||||||||| |||||| ||||||||||||||||||||
seq2  TACTCCCCCAAACCCACCCACT-CTGCTT-CTGACCCTGGCATTCCCCTG  48

seq1  TACTGGGGTAAAATCTCATTAAAAAACATCATGTAGCTTTGGAACACCTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGTAAAATCTCATTAAAAAACATCATGTAGCTTTGGAACACCTA  98

seq1  CTATATATTCACTGGGGTTCCATTCTTTTCTTCTAATTTATATTCTTTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTCACTGGGGTTCCATTCTTTTCTTCTAATTTATATTCTTTCC  148

seq1  CTTGTTTCTTTTGTTTCCAGCATCCTTTTTGCCTCCAAATATCAGCATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTTTTGTTTCCAGCATCCTTTTTGCCTCCAAATATCAGCATTA  198

seq1  TAGTGCATTGTTATAGGACTTGATCTTTTACAATCATTACTAGTGGGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATTGTTATAGGACTTGATCTTTTACAATCATTACTAGTGGGTAA  248

seq1  CTCCAATAGGGGTCTTCGGTGCAGTGCATGACTCATGACTCAGGAGGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATAGGGGTCTTCGGTGCAGTGCATGACTCATGACTCAGGAGGAAC  298

seq1  ATGGCCAAGTGTGTGCTATACACATTGTACAAAAAGGATGGAAAGGCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAGTGTGTGCTATACACATTGTACAAAAAGGATGGAAAGGCATG  348

seq1  AGGAGTCTGTGAAGGGGTCTCTGTACAGGAAATACACCCCACTGAGATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGTGAAGGGGTCTCTGTACAGGAAATACACCCCACTGAGATAT  398

seq1  ACTGCAGCAGGATGTGAGGCAGGTATATCTGCAGTAACCTAGCACCACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCAGGATGTGAGGCAGGTATATCTGCAGTAACCTAGCACCACAT  448

seq1  GTGGCCTGAAAATAAATCCATTAGTGAGGAGGCCAGAGCTAAGAGATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGAAAATAAATCCATTAGTGAGGAGGCCAGAGCTAAGAGATTAA  498

seq1  AGGGATTCCTAATGACATGTCAAATTAAGTGCCATACCAAGCACAGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCCTAATGACATGTCAAATTAAGTGCCATACCAAGCACAGAATT  548

seq1  GCCACCTGGGCTTTGCCACTATCTGAACAAATAAAATTTTGTTCATGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGGGCTTTGCCACTATCTGAACAAATAAAATTTTGTTCATGCCA  598

seq1  GTCTTTTACTGAGTTTCAAGCCACTTGAGCACTAAGATTGTAAGATCTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTACTGAGTTTCAAGCCACTTGAGCACTAAGATTGTAAGATCTAA  648

seq1  ACTTTCATAACATGGTAAATGAATTGTCAGGAAAAGAGTTTCTCATTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATAACATGGTAAATGAATTGTCAGGAAAAGAGTTTCTCATTAAA  698

seq1  TGTATGGGAAAAGCCTAATTATAATTTAGGCATTGGAAGGAATTTCGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGAAAAGCCTAATTATAATTTAGGCATTGGAAGGAATTTCGAGA  748

seq1  TGCAGAGCAGAACCTGCGAGAAGAGAAAGTGGAGCCACAGCAATAACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCAGAACCTGCGAGAAGAGAAAGTGGAGCCACAGCAATAACATA  798

seq1  CAAAGACATCCATCATAGGATGCAGTAATGTGTTTGATACGCTTCCCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATCCATCATAGGATGCAGTAATGTGTTTGATACGCTTCCCTTT  848

seq1  GAAACAAGAGCTAGAAGAACTTAAGAAGGTGGACTCCAGAAATTCAAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAGCTAGAAGAACTTAAGAAGGTGGACTCCAGAAATTCAAATA  898

seq1  ACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  939


seq1: chr5_49338763_49339728
seq2: B6Ng01-330H12.g_67_1032

seq1  GAATTCATCGCTGGCATTCTAGGGTCTTTAGTTTAACAATAGATGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGCTGGCATTCTAGGGTCTTTAGTTTAACAATAGATGGTTAT  50

seq1  AGGACCTCTTACATGTAGATGGCAAAGGTATAGATGTCTTCTTTGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTTACATGTAGATGGCAAAGGTATAGATGTCTTCTTTGTTCCC  100

seq1  CCCTCTCAGAAGTCTGACGAAAGCATAAGTCTGCTGTTGGGTATTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGAAGTCTGACGAAAGCATAAGTCTGCTGTTGGGTATTCCAAG  150

seq1  GCTTTACATTGGGAAGAAAACTGAATGACTGTGTATATTATGTACATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACATTGGGAAGAAAACTGAATGACTGTGTATATTATGTACATGAG  200

seq1  GATACTGTTCTGAATAATGTACAGAGGAAACAACATCTAACAAAATCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTCTGAATAATGTACAGAGGAAACAACATCTAACAAAATCACG  250

seq1  ATACAGCAAGCAAACTACTGTATGTTCTTATATCTTCACTAACCTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAAGCAAACTACTGTATGTTCTTATATCTTCACTAACCTATTCT  300

seq1  TTAAGTCACAGCTTGCATGTAGCATTTACACATACACACATACACGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCACAGCTTGCATGTAGCATTTACACATACACACATACACGTACA  350

seq1  CTTCATATCATAAAAAACTCTCTATCTTCCCATTTCTTTTGGAACGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATCATAAAAAACTCTCTATCTTCCCATTTCTTTTGGAACGTCTT  400

seq1  AATACATTTGTATTTTCTAACTTGATTAGTGTGTGTTTATTTTGGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTGTATTTTCTAACTTGATTAGTGTGTGTTTATTTTGGTAGGA  450

seq1  TTAAAATGGAACTTATACCAGAACTGTTCTTATTTTTTTTTTTTTGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGAACTTATACCAGAACTGTTCTTATTTTTTTTTTTTTGCACA  500

seq1  GTCATTTCTAGTATCTTTAATATGAGTCTGTCCTTGCTTTGATTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTAGTATCTTTAATATGAGTCTGTCCTTGCTTTGATTTTTTTT  550

seq1  TTTAAAGTTAAGTGTGAGCATTAAACAAGAGTTTGGTTTTTCCAGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTAAGTGTGAGCATTAAACAAGAGTTTGGTTTTTCCAGGTTCC  600

seq1  ATTCTTGGGGGTGTTATGGGACTTCTTATGACCTGGCGAGGTTTGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGGGTGTTATGGGACTTCTTATGACCTGGCGAGGTTTGTGTCC  650

seq1  CATGGACAGACCAAGAACTACACTCTTGTCATAAATGCTCTTACACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAGACCAAGAACTACACTCTTGTCATAAATGCTCTTACACTCAT  700

seq1  CTCTGTATTTTAAATACAAATGGGTGATATAGACCTTCTCTGGAAGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATTTTAAATACAAATGGGTGATATAGACCTTCTCTGGAAGCATC  750

seq1  CAGTAATTGAAAGTCTTGCAGCACATAAAATATTCTTGCCCTATCACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTGAAAGTCTTGCAGCACATAAAATATTCTTGCCCTATCACAGT  800

seq1  GTAATTGATGACAGTACACAATAACATTTTTCATTTTATCTGAAGGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGATGACAGTACACAATAACATTTTTCATTTTATCTGAAGGCCAC  850

seq1  GTCCTAAACAAGTTATTATTAATGTTCTGGAGACAGAATGCATCATTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAACAAGTTATTATTAATGTTCTGGAGACAGAATGCATCATTTCC  900

seq1  TTCAATGACCAGACGT-GAGTTACATGTTTTCTCTTATTCTTATTTATCC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCAATGACCAGACGTGGAGTTACATGTTTTCTCTTATTCTTATTTATCC  950

seq1  AATGCGGTGTGTGTGTG  966
      ||||| |||||||||||
seq2  AATGC-GTGTGTGTGTG  966


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