BAC Information

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BAC

Clone NameB6Ng01-330L24
Chromosome5 (Build37)
Map Location 80,330,775 - 80,445,950
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330L24.bB6Ng01-330L24.g
ACCGA117318GA117319
length7891,121
definitionB6Ng01-330L24.b B6Ng01-330L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,330,775 - 80,331,564)(80,444,824 - 80,445,950)
sequence
gaattctttagattgataacagttactagcaaaggtaaccactcttctgg
atcccaggtacatcagcttcatctgtgtcaacagcatatagaatattttc
tatgatttcacattaagtctctttttaatacctcatatgtttttttgttt
ccctttttctttttctaactaatatgtactgtttaatgttttttaaataa
cagttaagttcatgaacatttattgaagtttatatttttctcactggtca
tatttttctcactaaattccatcaacatcttataaatcaaaagaaataaa
ctttctctactattctgttttgagttttgtctatcttgtctataaagagt
aacttaaattcacagacttgaactttttgtgaatttatcagattcttcta
actagaatgtttatattcccaaattattattcatcaaatgaaatacattt
ttgtaagcatgcacatgtacacctgagggcatgggaaaataaatgataga
aggaaggaaggaaggaaggaaagagagagagagaaagaaagagaaagaaa
gaaaagaaaagaaagaaagaaagaaagaaagaaagagagaaagaaagaaa
ttaagaggatagtaaagtatttaaaataatagtattatatagaaaatagt
ttccagtttctagtatttatatggaaaaattgaaagacttaaattttatt
atttcagtttcatcaagtgatattttaaattttctttaaatttttgtttg
tggggctgtacagtatgtgtgtatgtgtgtgtggtgtgt

gaattctatatatagcaacagaccaaacctcagcacacagaaagaaaatt
attacataaggtgattaaatatcatcacatttatcctcaaaatggtatag
aagatggtcagatgtataattgttatattttaaaattaaataaagaagaa
cacagagcaggttttttgtttgtttatttgttttgttttgttaatttttt
ttagaaaatagcattaaatgtgactaacacagtatggcagatttatgtac
agataataaaacatttatatggtaaaggctctgtacaagaccattgtctg
tttatttgacaggaatcctgaaatgagaaagctgacatttaaatgatgga
tgtgaggtagattcatatgcagagtttggaatgcctaaagcctgctgtga
ttcctgagtttaagctagaaatcacattcagctatcccaaactcagagtt
tagtagtatgtgagatcagcaatacaagacccctcatggatttctataca
ttcttaaagatagagtccagtggaaactggaggtataggatgggctgctg
ttacatgacaatcaggtgactcagcagatcaccctcaatacaagcaaatt
gcacagtgtttgtgtcttcactgttcacaaagtgattagtgaatgtcctg
ctcgaaaagaatagacacaagaacttttaaacatgttatatttaatatga
aaagttttgctgtatggaagaacagaagatctgctccactttcttagtaa
aatcggttaggatgagcttcagataggcctgcacaggttttacatagtaa
aatcattgaagaagtgatataccttcactctttagacactgcagtctgta
agaagttacaaatttcaattacagtgagtaaggctgtcttgtgtacatat
tttcattttctattcaagatactagatcttttctttagtttttcagcata
catagaattcatttccacttagtgcaaagaaaagatgtgcatattttatc
atcatccataattaacttcttctatcctttccccaatttgtggtaataag
tgattggtgcttcagtatttttaattggcgatgcctatttcgtaccttga
gtaggtctattacacttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80330775_80331564
seq2: B6Ng01-330L24.b_48_836

seq1  GAATTCTTTAGATTGATAACAGTTACTAGCAAAGGTAACCACTCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGATTGATAACAGTTACTAGCAAAGGTAACCACTCTTCTGG  50

seq1  ATCCCAGGTACATCAGCTTCATCTGTGTCAACAGCATATAGAATATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGTACATCAGCTTCATCTGTGTCAACAGCATATAGAATATTTTC  100

seq1  TATGATTTCACATTAAGTCTCTTTTTAATACCTCATATGTTTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTCACATTAAGTCTCTTTTTAATACCTCATATGTTTTTTTGTTT  150

seq1  CCCTTTTTCTTTTTCTAACTAATATGTACTGTTTAATGTTTTTTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTTTCTAACTAATATGTACTGTTTAATGTTTTTTAAATAA  200

seq1  CAGTTAAGTTCATGAACATTTATTGAAGTTTATATTTTTCTCACTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGTTCATGAACATTTATTGAAGTTTATATTTTTCTCACTGGTCA  250

seq1  TATTTTTCTCACTAAATTCCATCAACATCTTATAAATCAAAAGAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCACTAAATTCCATCAACATCTTATAAATCAAAAGAAATAAA  300

seq1  CTTTCTCTACTATTCTGTTTTGAGTTTTGTCTATCTTGTCTATAAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTACTATTCTGTTTTGAGTTTTGTCTATCTTGTCTATAAAGAGT  350

seq1  AACTTAAATTCACAGACTTGAACTTTTTGTGAATTTATCAGATTCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTCACAGACTTGAACTTTTTGTGAATTTATCAGATTCTTCTA  400

seq1  ACTAGAATGTTTATATTCCCAAATTATTATTCATCAAATGAAATACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGTTTATATTCCCAAATTATTATTCATCAAATGAAATACATTT  450

seq1  TTGTAAGCATGCACATGTACACCTGAGGGCATGGGAAAATAAATGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCATGCACATGTACACCTGAGGGCATGGGAAAATAAATGATAGA  500

seq1  AGGAAGGAAGGAAGGAAGGAAAGAGAGAGAGAGAAAGAAAGAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAAGAGAGAGAGAGAAAGAAAGAGAAAGAAA  550

seq1  GAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAA  600

seq1  TTAAGAGGATAGTAAAGTATTTAAAATAATAGTATTATATAGAAAATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGATAGTAAAGTATTTAAAATAATAGTATTATATAGAAAATAGT  650

seq1  TTCCAGTTTCTAGTATTTATATGGAAAAATTGAAAGACTTAAATTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTCTAGTATTTATATGGAAAAATTGAAAGACTTAAATTTTATT  700

seq1  ATTTCAGTTTCATCAAGTGATATTTTAAATTTTCTTTAAATTTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTTTCATCAAGTGATATTTTAAATTTTCTTTAAATTTTTGTTTG  750

seq1  TGGGGCTGTACAGTATGTGTGTATGTGTGTGTGTGTGTGT  790
      ||||||||||||||||||||||||||||||||| ||||||
seq2  TGGGGCTGTACAGTATGTGTGTATGTGTGTGTG-GTGTGT  789


seq1: chr5_80444824_80445950
seq2: B6Ng01-330L24.g_68_1188 (reverse)

seq1  TAAG-AGTGTAATAGACATTATCAAGGTAAGAAAATAGGCATTTTGCAAT  49
      |||| |||||||||||| |  |||||||| | ||||||||||     | |
seq2  TAAGAAGTGTAATAGACCTACTCAAGGTACG-AAATAGGCATCGCCAATT  49

seq1  AAAAATACCTGAAGCACAAATTCACTTATTACCACAAATTTGGGGAAAGA  99
      ||||||| ||||||||| || ||||||||||||||||| |||||||||| 
seq2  AAAAATA-CTGAAGCACCAA-TCACTTATTACCACAAA-TTGGGGAAAGG  96

seq1  ATAGAAGAAGTTTAATTATGGATGATGATAAAATATTGCACATC-TTTCT  148
      |||||||||| |||||||||||||||||||||||| |||||||| |||||
seq2  ATAGAAGAAG-TTAATTATGGATGATGATAAAATA-TGCACATCTTTTCT  144

seq1  TTGCACTAAGTGGAAATGAATTCTATGTATGCTG-AAAACTAAAGAAAAG  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCACTAAGTGGAAATGAATTCTATGTATGCTGAAAAACTAAAGAAAAG  194

seq1  ATCTAGTATCTTGAATAGAAAATGAAAATATGTACACAAAGACAGCCTTA  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCTAGTATCTTGAATAGAAAATGAAAATATGTACAC-AAGACAGCCTTA  243

seq1  CTCACTGTAATTGAAATTTTGTAACTTTCTTACAGACTGCAGTGTCTAAA  297
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CTCACTGTAATTGAAA-TTTGTAAC-TTCTTACAGACTGCAGTGTCTAAA  291

seq1  GAGTGAAGGTATATCACTTCTTCAATGATTTTACTATGTAAAACCTGTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGGTATATCACTTCTTCAATGATTTTACTATGTAAAACCTGTGC  341

seq1  AGGCCTATCTGAAGCTCATCCTAACCGATTTTACTAAGAAAGTGGAGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATCTGAAGCTCATCCTAACCGATTTTACTAAGAAAGTGGAGCAG  391

seq1  ATCTTCTGTTCTTCCATACAGCAAAACTTTTCATATTAAATATAACATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTTCTTCCATACAGCAAAACTTTTCATATTAAATATAACATGT  441

seq1  TTAAAAGTTCTTGTGTCTATTCTTTTCGAGCAGGACATTCACTAATCACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTCTTGTGTCTATTCTTTTCGAGCAGGACATTCACTAATCACT  491

seq1  TTGTGAACAGTGAAGACACAAACACTGTGCAATTTGCTTGTATTGAGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACAGTGAAGACACAAACACTGTGCAATTTGCTTGTATTGAGGGT  541

seq1  GATCTGCTGAGTCACCTGATTGTCATGTAACAGCAGCCCATCCTATACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTGAGTCACCTGATTGTCATGTAACAGCAGCCCATCCTATACCT  591

seq1  CCAGTTTCCACTGGACTCTATCTTTAAGAATGTATAGAAATCCATGAGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCACTGGACTCTATCTTTAAGAATGTATAGAAATCCATGAGGG  641

seq1  GTCTTGTATTGCTGATCTCACATACTACTAAACTCTGAGTTTGGGATAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTATTGCTGATCTCACATACTACTAAACTCTGAGTTTGGGATAGC  691

seq1  TGAATGTGATTTCTAGCTTAAACTCAGGAATCACAGCAGGCTTTAGGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGATTTCTAGCTTAAACTCAGGAATCACAGCAGGCTTTAGGCAT  741

seq1  TCCAAACTCTGCATATGAATCTACCTCACATCCATCATTTAAATGTCAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCTGCATATGAATCTACCTCACATCCATCATTTAAATGTCAGC  791

seq1  TTTCTCATTTCAGGATTCCTGTCAAATAAACAGACAATGGTCTTGTACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTCAGGATTCCTGTCAAATAAACAGACAATGGTCTTGTACAG  841

seq1  AGCCTTTACCATATAAATGTTTTATTATCTGTACATAAATCTGCCATACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTACCATATAAATGTTTTATTATCTGTACATAAATCTGCCATACT  891

seq1  GTGTTAGTCACATTTAATGCTATTTTCTAAAAAAAATTAACAAAACAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTCACATTTAATGCTATTTTCTAAAAAAAATTAACAAAACAAAA  941

seq1  CAAATAAACAAACAAAAAACCTGCTCTGTGTTCTTCTTTATTTAATTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAACAAACAAAAAACCTGCTCTGTGTTCTTCTTTATTTAATTTTA  991

seq1  AAATATAACAATTATACATCTGACCATCTTCTATACCATTTTGAGGATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACAATTATACATCTGACCATCTTCTATACCATTTTGAGGATAA  1041

seq1  ATGTGATGATATTTAATCACCTTATGTAATAATTTTCTTTCTGTGTGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGATATTTAATCACCTTATGTAATAATTTTCTTTCTGTGTGCTG  1091

seq1  AGGTTTGGTCTGTTGCTATATATAGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  AGGTTTGGTCTGTTGCTATATATAGAATTC  1121


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