BAC Information

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BAC

Clone NameB6Ng01-330M08
Chromosome5 (Build37)
Map Location 85,665,088 - 85,666,336
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330M08.bB6Ng01-330M08.g
ACCGA117332GA117333
length1,2241,112
definitionB6Ng01-330M08.b B6Ng01-330M08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctataggatgaataagtacattttaactagataatctataagtaa
tatggagatattagaaaattttctggcaagggaagaactacataaggtat
cagcaccctcccatgaatgcttggattagatttagtaaacaatgtgccac
ataaaacacatactcacaggcagctaaagtaaagtggtctgtacatgggt
atacaagaaaggatctgaaatgcaaatttattaaatctagaaaagaccta
attgattttacaacaagcaccatacacgatccacattagttcttgagatc
taaaggaaaaaaggcacataaaaaatgatccaaaggtgcagtagtgcagt
tcagaaatataccctatgcctccacttgcttaattatttactttattaat
aattatttactccatttatacttttttcaccagtgcttttaagagcaaca
ataatattgtctctgtagtaagcaaatctctgttggaactgtccgtagca
atcataggctagtaagctttcatcatcaaaagctttgacaaaaaagttgt
atcagtaagtgtcaaaattgtatgttctcatatcctacctctgtgctggc
aagataattgatttaattatgccatttttaataaattaatattatatatc
tatatgatagatattctgtgcatcttcctattcttctacttacagtctcc
ctggatttttttaattttatatacttactgaaatcttttttttaattctt
tatatctttatccaaacctaattaatgccaatttactaaataattgttta
accaccaattttattttacttaatttttttgtgtagttaagtacaatcca
tcaccaagaaatctcaaggatttattttaagttcagattttatcatatta
cctttataattcactgaaattattcatatggtaagaaaataaaaagagta
caaattttatcctattgcctttataattcactgaaattattttcataggt
aagatatagaaagagtactatattgaaaaattgcatctagaaaatgtgga
aaatataaatcttgtttctcttgtcatcagagaaatttcacccagcatct
ttatgaaacggatgcgacaccccacagctatatttaaggcagatttggga
tctgctgaagggagagaatgacttagagccgaagtcagtttaccaggaaa
tatcatttacctgggtttatatgg

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaataat
gttcaacatccttgatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
tagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatctgtctggcggttcctc
agaaaattggacatagtactaccagaggatcccgcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagtcttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacgcaatcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccagaaa
cttatgatacccaagatataagatacaatttgctaaacacatgaaactca
agaagaacgaagaccaaagtgtggacactttgctcctccttagaactggg
aacaaaacacccacggaaggagttacagagaatatttggagctgttacga
aaggatggaccatctagtgattgccatatccatggatccatcccataatc
agcttccaaacgctaacaccattgcatacactagcaagatttttgctgaa
aggacccagatatagctgtctcttgtgagactaatgctggggcctagcaa
cacagaaagtggatactcacagtcagctattggatggatcacagggcccc
attgaggagctagaagaaagtacccatgagcttaagtgaactgcatcctt
acaggtggacatcatattcacttaccagtacccggaggctcttgcctcta
gctgcatttattcaaaaggatgcctagttggcatccttgcaaaaaatggc
cattgcacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85665088_85666336
seq2: B6Ng01-330M08.b_48_1271 (reverse)

seq1  CCATTTAAACCCAGGTTAATTGATTATATTTTTCTTGTGGTATACTTGAC  50
      |||| ||||||||||| |    || |||||    |  ||||| || ||||
seq2  CCATATAAACCCAGGTAA----ATGATATT----TCCTGGTAAAC-TGAC  41

seq1  CTCTCTGCCTCCTAAAGTCATTCCTCTCCCTCTTCAGCAGGAATCCCCAA  100
       ||   | |||   |||||||| ||||||  |||||||||  |||||  |
seq2  TTC---GGCTC--TAAGTCATT-CTCTCC--CTTCAGCAG--ATCCC--A  79

seq1  AATCTGCCTAATTTTTGGTTGT-GGGTGTCTGCATCTGTTTCAATAAGAT  149
      ||||||||| |  | | | ||| ||||||| ||||| ||||||  |||||
seq2  AATCTGCCTTAAATATAGCTGTGGGGTGTC-GCATCCGTTTCATAAAGAT  128

seq1  GCTGGGTGAAATTTCTCTGATGACAA-AGAGAACAGATTTATATTTTCCA  198
      |||||||||||||||||||||||||| ||| |  ||||||||||||||| 
seq2  GCTGGGTGAAATTTCTCTGATGACAAGAGAAACAAGATTTATATTTTCC-  177

seq1  ACATTTTTCTAGATGCAATTTTTCAATATAGTACTCTTTCTATAATCTTA  248
      ||| ||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  ACA-TTTTCTAGATGCAATTTTTCAATATAGTACTCTTTCTAT-ATCTT-  224

seq1  ACCTATGAAAATAATTTCAGTGAATTATAAAGGCAATAGGATAAAATTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGAAAATAATTTCAGTGAATTATAAAGGCAATAGGATAAAATTTG  274

seq1  TACTCTTTTTATTTTCTTACCATATGAAATAATTTCAGTGAATTATAAAG  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACTCTTTTTATTTTCTTACCATATG-AATAATTTCAGTGAATTATAAAG  323

seq1  GTAATATGATAAAATCTGAACTTAAAATAAATCCTTGAGATTTCTTGGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGATAAAATCTGAACTTAAAATAAATCCTTGAGATTTCTTGGTG  373

seq1  ATGGATTGTACTTAACTACACAAAAAAATTAAGTAAAATAAAATTGGTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGTACTTAACTACACAAAAAAATTAAGTAAAATAAAATTGGTGG  423

seq1  TTAAACAATTATTTAGTAAATTGGCATTAATTAGGTTTGGATAAAGATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATTATTTAGTAAATTGGCATTAATTAGGTTTGGATAAAGATAT  473

seq1  AAAGAATTAAAAAAAAGATTTCAGTAAGTATATAAAATTAAAAAAATCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTAAAAAAAAGATTTCAGTAAGTATATAAAATTAAAAAAATCCA  523

seq1  GGGAGACTGTAAGTAGAAGAATAGGAAGATGCACAGAATATCTATCATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGTAAGTAGAAGAATAGGAAGATGCACAGAATATCTATCATAT  573

seq1  AGATATATAATATTAATTTATTAAAAATGGCATAATTAAATCAATTATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATAATATTAATTTATTAAAAATGGCATAATTAAATCAATTATCT  623

seq1  TGCCAGCACAGAGGTAGGATATGAGAACATACAATTTTGACACTTACTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCACAGAGGTAGGATATGAGAACATACAATTTTGACACTTACTGA  673

seq1  TACAACTTTTTTGTCAAAGCTTTTGATGATGAAAGCTTACTAGCCTATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTTTTTGTCAAAGCTTTTGATGATGAAAGCTTACTAGCCTATGA  723

seq1  TTGCTACGGACAGTTCCAACAGAGATTTGCTTACTACAGAGACAATATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACGGACAGTTCCAACAGAGATTTGCTTACTACAGAGACAATATTA  773

seq1  TTGTTGCTCTTAAAAGCACTGGTGAAAAAAGTATAAATGGAGTAAATAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCTTAAAAGCACTGGTGAAAAAAGTATAAATGGAGTAAATAAT  823

seq1  TATTAATAAAGTAAATAATTAAGCAAGTGGAGGCATAGGGTATATTTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAAAGTAAATAATTAAGCAAGTGGAGGCATAGGGTATATTTCTG  873

seq1  AACTGCACTACTGCACCTTTGGATCATTTTTTATGTGCCTTTTTTCCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCACTACTGCACCTTTGGATCATTTTTTATGTGCCTTTTTTCCTTT  923

seq1  AGATCTCAAGAACTAATGTGGATCGTGTATGGTGCTTGTTGTAAAATCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAAGAACTAATGTGGATCGTGTATGGTGCTTGTTGTAAAATCAA  973

seq1  TTAGGTCTTTTCTAGATTTAATAAATTTGCATTTCAGATCCTTTCTTGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTTTTCTAGATTTAATAAATTTGCATTTCAGATCCTTTCTTGTA  1023

seq1  TACCCATGTACAGACCACTTTACTTTAGCTGCCTGTGAGTATGTGTTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGTACAGACCACTTTACTTTAGCTGCCTGTGAGTATGTGTTTTA  1073

seq1  TGTGGCACATTGTTTACTAAATCTAATCCAAGCATTCATGGGAGGGTGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACATTGTTTACTAAATCTAATCCAAGCATTCATGGGAGGGTGCT  1123

seq1  GATACCTTATGTAGTTCTTCCCTTGCCAGAAAATTTTCTAATATCTCCAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTTATGTAGTTCTTCCCTTGCCAGAAAATTTTCTAATATCTCCAT  1173

seq1  ATTACTTATAGATTATCTAGTTAAAATGTACTTATTCATCCTATAGAATT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATAGATTATCTAGTTAAAATGTACTTATTCATCCTATAGAATT  1223

seq1  C  1249
      |
seq2  C  1224


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