BAC Information

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BAC

Clone NameB6Ng01-330N12
Chromosome5 (Build37)
Map Location 119,282,676 - 119,401,121
singlet/doubletdoublet
Overlap genenone
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330N12.bB6Ng01-330N12.g
ACCGA117376GA117377
length1,092171
definitionB6Ng01-330N12.b B6Ng01-330N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,400,023 - 119,401,121)(119,282,676 - 119,282,846)
sequence
gaattctttttatttgtctcctttgaccactgagtccccaaatcagtctt
ttaaaaaaatttctgtgtaggagggggctttcctcagaacacaatgttaa
caagcatcgagtcacagccagccctgctggtattttcccaaagggccttc
aaaatgaaactgcatttaccaaaaaaaaaaaaaaaaaaaaagagagagag
agagagaaaagccaggattccaagggagtagcaaataattttagtcacat
taaggggtttgccgagagcctgtgtcgtctctggaatggactgtccacct
agcacatctggagatgttgtatgccggtggtacaactgaagcaccagaga
gatctctggattaaaggaccacagggactgtcagggcaagagatgggggt
gtgttaaaccctgaaattctagacaataacggtaggagaattactatgac
caacagtgtgggaaacaccaggtatatcgccatttgggggagaaggcatg
ttaaagaaaaaggaatctgggaggcctttgacacggtaaaatggaagtca
ggaaagactactctggtccattctatgagtgttcggtcctcccctgttac
ttgtgagagatgcagacaggaagtaatcatagcacaccaaaacccatcct
ctgtagagagcctccgctgtatactctcgccggtgaacacgggtgggtgt
gtgcaaacatgaggatgtgaaccagctgcactcatgtggaggtcagagga
caacctcggtgtcagtccccaagtcccaccttttggttgggtcagggtct
ctcataggcctagagtttcccagtgtaagcgatccgctgcctacctgcgt
ccagcatcacatcgaggatgagattgaatacaatgcatcctattgtgcct
gcttttttatgtagctccagaaccctgtgagtaccaacggaggcattccc
ccagtctctgagctatatacttaacctctcgtgacttagtttccccctca
gtgtcaatgctgctttcctctatctaggcacccatactgtcttatgtgcg
tgcgtgtgtcacatgactaatacagacaatggaaggtaggag
actgcttgtctcgctcccacccccaccccctgcccccgttggccaacagt
tgaacagttaatttatttgttgttctgaaacatgtgcgtgaaaggacttt
ccaacatggcttaatgccttgtcttgtgacctcatttggctcttgttttt
acgggagtgggggtgggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119400023_119401121
seq2: B6Ng01-330N12.b_50_1141 (reverse)

seq1  CTCCTACCTTCCATTGGCTGTTATTAGTCATGTGACACAACGCACGCACA  50
      |||||||||||||||| ||| ||||||||||||||||| |||||||||||
seq2  CTCCTACCTTCCATTGTCTG-TATTAGTCATGTGACAC-ACGCACGCACA  48

seq1  TAAGACAGTATGGGTGCCCTAAGATTAGGAGGAAAGCAGCATTGACACTG  100
      ||||||||||||||||||   ||||   ||||||||||||||||||||||
seq2  TAAGACAGTATGGGTGCC--TAGAT--AGAGGAAAGCAGCATTGACACTG  94

seq1  AGGGGGAAACTAAGTCACAAAGAGGTTAAGTATATAGCTCAGAGACTGGG  150
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AGGGGGAAACTAAGTCAC-GAGAGGTTAAGTATATAGCTCAGAGACTGGG  143

seq1  GAAATGCCTCCGTTGGTACTCACAAGGTTCTGGAGCTACATAAAAAAGCA  200
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGAATGCCTCCGTTGGTACTCACAGGGTTCTGGAGCTACATAAAAAAGCA  193

seq1  GGCACAATAGGATGCATTGTATTCAATCTCATCCTCGATGTGATGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATAGGATGCATTGTATTCAATCTCATCCTCGATGTGATGCTGGA  243

seq1  CGCAGGTAGGCAGCGGATCGCTTACACTGGGAAACTCTAGGCCTATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGTAGGCAGCGGATCGCTTACACTGGGAAACTCTAGGCCTATGAGA  293

seq1  GACCCTGACCCAACCAAAAGGTGGGACTTGGGGACTGACACCGAGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACCCAACCAAAAGGTGGGACTTGGGGACTGACACCGAGGTTGT  343

seq1  CCTCTGACCTCCACATGAGTGCAGCTGGTTCACATCCTCATGTTTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTCCACATGAGTGCAGCTGGTTCACATCCTCATGTTTGCACA  393

seq1  CACCCACCCGTGTTCACCGGCGAGAGTATACAGCGGAGGCTCTCTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCGTGTTCACCGGCGAGAGTATACAGCGGAGGCTCTCTACAGA  443

seq1  GGATGGGTTTTGGTGTGCTATGATTACTTCCTGTCTGCATCTCTCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGTTTTGGTGTGCTATGATTACTTCCTGTCTGCATCTCTCACAAG  493

seq1  TAACAGGGGAGGACCGAACACTCATAGAATGGACCAGAGTAGTCTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGGAGGACCGAACACTCATAGAATGGACCAGAGTAGTCTTTCCT  543

seq1  GACTTCCATTTTACCGTGTCAAAGGCCTCCCAGATTCCTTTTTCTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCATTTTACCGTGTCAAAGGCCTCCCAGATTCCTTTTTCTTTAAC  593

seq1  ATGCCTTCTCCCCCAAATGGCGATATACCTGGTGTTTCCCACACTGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTCCCCCAAATGGCGATATACCTGGTGTTTCCCACACTGTTGG  643

seq1  TCATAGTAATTCTCCTACCGTTATTGTCTAGAATTTCAGGGTTTAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAATTCTCCTACCGTTATTGTCTAGAATTTCAGGGTTTAACACA  693

seq1  CCCCCATCTCTTGCCCTGACAGTCCCTGTGGTCCTTTAATCCAGAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTCTTGCCCTGACAGTCCCTGTGGTCCTTTAATCCAGAGATCT  743

seq1  CTCTGGTGCTTCAGTTGTACCACCGGCATACAACATCTCCAGATGTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGCTTCAGTTGTACCACCGGCATACAACATCTCCAGATGTGCTA  793

seq1  GGTGGACAGTCCATTCCAGAGACGACACAGGCTCTCGGCAAACCCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACAGTCCATTCCAGAGACGACACAGGCTCTCGGCAAACCCCTTAA  843

seq1  TGTGACTAAAATTATTTGCTACTCCCTTGGAATCCTGGCTTTTCTCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTAAAATTATTTGCTACTCCCTTGGAATCCTGGCTTTTCTCTCTC  893

seq1  TCTCTCTCTTTTTTTTTTTTTTTTTTTTTGGTAAATGCAGTTTCATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTTTTTTTTTTTTTTTTTTTGGTAAATGCAGTTTCATTTTG  943

seq1  AAGGCCCTTTGGGAAAATACCAGCAGGGCTGGCTGTGACTCGATGCTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTTGGGAAAATACCAGCAGGGCTGGCTGTGACTCGATGCTTGT  993

seq1  TAACATTGTGTTCTGAGGAAAGCCCCCTCCTACACAGAAATTTTTTTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGTGTTCTGAGGAAAGCCCCCTCCTACACAGAAATTTTTTTAAA  1043

seq1  AGACTGATTTGGGGACTCAGTGGTCAAAGGAGACAAATAAAAAGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTTGGGGACTCAGTGGTCAAAGGAGACAAATAAAAAGAATTC  1092

seq1: chr5_119282676_119282846
seq2: B6Ng01-330N12.g_74_244

seq1  ACTGCTTGTCTCGCTCCCACCCCCACCCCCTGCCCCCGTTGGCCAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGTCTCGCTCCCACCCCCACCCCCTGCCCCCGTTGGCCAACAGT  50

seq1  TGAACAGTTAATTTATTTGTTGTTCTGAAACATGTGCGTGAAAGGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTTAATTTATTTGTTGTTCTGAAACATGTGCGTGAAAGGACTTT  100

seq1  CCAACATGGCTTAATGCCTTGTCTTGTGACCTCATTTGGCTCTTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGGCTTAATGCCTTGTCTTGTGACCTCATTTGGCTCTTGTTTTT  150

seq1  ACGGGAGTGGGGGTGGGGGAA  171
      |||||||||||||||||||||
seq2  ACGGGAGTGGGGGTGGGGGAA  171