BAC Information

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BAC

Clone NameB6Ng01-331A19
Chromosome5 (Build37)
Map Location 104,141,287 - 104,336,221
singlet/doubletdoublet
Overlap geneAff1, Klhl8
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneHsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A19.bB6Ng01-331A19.g
ACCGA117525GA117526
length722456
definitionB6Ng01-331A19.b B6Ng01-331A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,141,287 - 104,142,008)(104,335,760 - 104,336,221)
sequence
gaattccagttgggcttaattgtttgttttttgagacagggacttgttat
atagcttagcccagccttgaatgaactcttatggaattataagcatgtgc
ctcgacacctagccaacctacattttaaaaaattgaatttatgtttaata
attacaggcattgtgacccttttccccaacaccagcaggcatggcacagg
ggctggggcatatgtccccctactggttttctgcaaagcattacagtctt
acatgagaatcagctgttctcttgcacactcagtatgttttcccttctcc
tcttagtcctttcaaggatgctagcacaacctgtgaccttgggctgatag
cttcaaacctagtgtctcatttgcaagatgagatattagtgtatacttca
gaaaggttattttactgtttacatgaaacatttctcaaaggcttaacata
gtgctcagcacaaagttgacactcagaacatggtattcccttccctcctt
cccataataaacctatgtatgttttttttttccttctaaaatgctttaag
tagcagcctcaaagtccatagtaatgtttggcttctctctctctctctct
ctcttttctctctctctagtatagaatagagtttattcagtgtatgggga
ggggagttaagagggtagcagaggcagagaatgagtatagtaagaaatgg
gggcatggccgtggccacatgg
tttacttctttacttgagagtttgcattagattagctgtgtgtaaaaaac
aagtggtggtcatctttgaaaataaaaatcctgataggattactacaatt
taaaatgagtgatttttatgggtgcctttctactttggagctctaagaag
ttggaaagtatttgttgtatggagagatcattattgatactatttcggtg
ctcattaagacacacataggcacagccacggagttagaaccagtgccata
tttggatagtcatgagacttgggctatgtagtcaggcttactaatgttga
ctcctgccttacacctctgtggtattggataggctttcttaccctctctg
agcctctttatccactacagttaaaagtagtttttctttaggtgtcagat
gatactgtcatttaggtgtcattcatgtatgtatgtatatgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104141287_104142008
seq2: B6Ng01-331A19.b_45_766

seq1  GAATTCCAGTTGGGCTTAATTGTTTGTTTTTTGAGACAGGGACTTGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGGGCTTAATTGTTTGTTTTTTGAGACAGGGACTTGTTAT  50

seq1  ATAGCTTAGCCCAGCCTTGAATGAACTCTTATGGAATTATAAGCATGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTAGCCCAGCCTTGAATGAACTCTTATGGAATTATAAGCATGTGC  100

seq1  CTCGACACCTAGCCAACCTACATTTTAAAAAATTGAATTTATGTTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACACCTAGCCAACCTACATTTTAAAAAATTGAATTTATGTTTAATA  150

seq1  ATTACAGGCATTGTGACCCTTTTCCCCAACACCAGCAGGCATGGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGCATTGTGACCCTTTTCCCCAACACCAGCAGGCATGGCACAGG  200

seq1  GGCTGGGGCATATGTCCCCCTACTGGTTTTCTGCAAAGCATTACAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGCATATGTCCCCCTACTGGTTTTCTGCAAAGCATTACAGTCTT  250

seq1  ACATGAGAATCAGCTGTTCTCTTGCACACTCAGTATGTTTTCCCTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAATCAGCTGTTCTCTTGCACACTCAGTATGTTTTCCCTTCTCC  300

seq1  TCTTAGTCCTTTCAAGGATGCTAGCACAACCTGTGACCTTGGGCTGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCCTTTCAAGGATGCTAGCACAACCTGTGACCTTGGGCTGATAG  350

seq1  CTTCAAACCTAGTGTCTCATTTGCAAGATGAGATATTAGTGTATACTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCTAGTGTCTCATTTGCAAGATGAGATATTAGTGTATACTTCA  400

seq1  GAAAGGTTATTTTACTGTTTACATGAAACATTTCTCAAAGGCTTAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTATTTTACTGTTTACATGAAACATTTCTCAAAGGCTTAACATA  450

seq1  GTGCTCAGCACAAAGTTGACACTCAGAACATGGTATTCCCTTCCCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGCACAAAGTTGACACTCAGAACATGGTATTCCCTTCCCTCCTT  500

seq1  CCCATAATAAACCTATGTATGTTTTTTTTTTCCTTCTAAAATGCTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATAAACCTATGTATGTTTTTTTTTTCCTTCTAAAATGCTTTAAG  550

seq1  TAGCAGCCTCAAAGTCCATAGTAATGTTTGGCTTCTCTCTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTCAAAGTCCATAGTAATGTTTGGCTTCTCTCTCTCTCTCTCT  600

seq1  CTCTTTTCTCTCTCTCTAGTATAGAATAGAGTTTATTCAGTGTATGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCTCTCTCTAGTATAGAATAGAGTTTATTCAGTGTATGGGGA  650

seq1  GGGGAGTTAAGAGGGTAGCAGAGGCAGAGAAGGAG-AGAGTAAAGAAATG  699
      ||||||||||||||||||||||||||||||| ||| | ||| ||||||||
seq2  GGGGAGTTAAGAGGGTAGCAGAGGCAGAGAATGAGTATAGT-AAGAAATG  699

seq1  GGGGCCTGGCCATGGCCACATGG  722
      ||||| ||||| |||||||||||
seq2  GGGGCATGGCCGTGGCCACATGG  722

seq1: chr5_104335760_104336221
seq2: B6Ng01-331A19.g_66_527 (reverse)

seq1  ACACACACACACACACATATACATACATACATGAATGACACCTAAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACATATACATACATACATGAATGACACCTAAATGAC  50

seq1  AGTATCATCTGACACCTAAAGAAAAACTACTTTTAACTGTAGTGGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATCTGACACCTAAAGAAAAACTACTTTTAACTGTAGTGGATAAA  100

seq1  GAGGCTCAGAGAGGGTAAGAAAGCCTATCCAATACCACAGAGGTGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGAGAGGGTAAGAAAGCCTATCCAATACCACAGAGGTGTAAGG  150

seq1  CAGGAGTCAACATTAGTAAGCCTGACTACATAGCCCAAGTCTCATGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCAACATTAGTAAGCCTGACTACATAGCCCAAGTCTCATGACTA  200

seq1  TCCAAATATGGCACTGGTTCTAACTCCGTGGCTGTGCCTATGTGTGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATGGCACTGGTTCTAACTCCGTGGCTGTGCCTATGTGTGTCTT  250

seq1  AATGAGCACCGAAATAGTATCAATAATGATCTCTCCATACAACAAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCACCGAAATAGTATCAATAATGATCTCTCCATACAACAAATACT  300

seq1  TTCCAACTTCTTAGAGCTCCAAAGTAGAAAGGCACCCATAAAAATCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTCTTAGAGCTCCAAAGTAGAAAGGCACCCATAAAAATCACTC  350

seq1  ATTTTAAATTGTAGTAATCCTATCAGGATTTTTATTTTCAAAGATGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTGTAGTAATCCTATCAGGATTTTTATTTTCAAAGATGACCA  400

seq1  CCACTTGTTTTTTACACACAGCTAATCTAATGCAAACTCTCAAGTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTTTTTTACACACAGCTAATCTAATGCAAACTCTCAAGTAAAGA  450

seq1  AGTAAAGAATTC  462
      ||||||||||||
seq2  AGTAAAGAATTC  462