BAC Information

Click to search

BAC

Clone NameB6Ng01-331B18
Chromosome5 (Build37)
Map Location 73,516,473 - 73,669,838
singlet/doubletdoublet
Overlap geneFryl
Upstream geneGabrb1, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127
Downstream geneOciad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331B18.bB6Ng01-331B18.g
ACCGA117569GA117570
length966853
definitionB6Ng01-331B18.b B6Ng01-331B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,668,862 - 73,669,838)(73,516,473 - 73,517,315)
sequence
gaattccatcaggtcgaagctttatagaccgcagcagagcaaacaaggcc
aagagactgaagaatctcattcaatactccatgctcagagatttatggtt
gtaccctttctcggattcttccaagctgtagccatgttgcctcaaacacg
ccacttacacaaaacctggaagtgatgtccttgcttctccttactgcatt
tataaatgtttatgttctcccttctttaaaaaaaaaaaagagaaaggaag
gaaggaaggaagccgggcagtggtggcgcacgcctttgatcccagtactt
gggaggcagaggcaggtggatttctgagttcgaggccagcctggtctaca
gagtgagttccaggacagccagggctacacaggaaaccctgtttcggaaa
accaaaaacaaacaaacaaaaacaagcaagtaagcaagtgagccaggtat
ggcggtggtgcacacctataatcaatcccaatacttgagagactagagct
gggggaatcacaaattctaggccagcctgggctacatagcaagatcctgt
cccaaggaataaacaaacagaatatgacagatataaaaaaggacaaacaa
caacccccttaacttctttcagacacatgttgtatcagacccttctcttt
aaagtttttattatttgtatcccaggttggccttaaacttactatttgag
tatggtgaggctagttttgaactcctgatcattctgcttccacctcccac
atgctgtaatctcagcatagcactatcacaccgagatctctaccactcct
ctttatagaccaccagtctctgctaactagtcttatttacccacagtcat
agcacactctaacctttccctctctccccacccctactcccaatactcta
cactgatggaattccattcatcagctgtatgctccttgataggtaaagta
acaactcaagatagct
gaattcttcccatactcaggaaagactaaaaacaattgggagatgattgc
tttgaatgcattataggattcggacttgggagccaggcatggtaatgcaa
gcttactattccagccttggggggtccaaagcaaaaggaccaagagttca
aacccaggctagtctacacagcaaccttaagaagagcaaacagaggaggg
ctgagagagcttgtcatctttacttaaataacctgaatctggactgtggg
aaagcaacggcctgaagcgagttacacttacccttccttgtgtttaaagt
gcttaaaagctaggtttagaacctcatggactaaggggtcgggcacagga
tgaacaggaatctagaattgaaagaaaaacaacaccatgtcagaaggctt
aagtagcacagtagacattcatgaatagtcttatcatttcaatgctgtca
atcatctgttcctgaggcaataaacattttagaagtaatttaaggaaaat
gaactcgatacgactttacacctgttttggggggcgggggtggggggcaa
tgacgtccgccaagagcaatttggaaaggtgatggtagtgacgaggtttc
ctatgcctcgctggtggggctggtggcactttccacgctgcacattacgc
aagtaaaggcatggcggcacactaccccactcattgcactggggaggtgc
tgattatttttaagctcaaaggtagattgagagacaggatataaaacgat
gtacagctcttctctttctgaactgtctactgtcagggtgtgagcttctc
tcttttggaggactttcaccccgactaagtgtgaaagctttccccaccag
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73668862_73669838
seq2: B6Ng01-331B18.b_47_1012 (reverse)

seq1  AGCTATCTTGAGTTGTTTACCTTTACCTTTATTCAAGGAGCATTACCAGC  50
      |||||||||||||||||   ||||||||    |||||||||||   ||||
seq2  AGCTATCTTGAGTTGTT--ACTTTACCT---ATCAAGGAGCAT--ACAGC  43

seq1  TGGAATGAATGGAA-TCCATCAAGTGTAGGAGTA-TGGGAGTAGGGGTGG  98
      ||  |||||||||| |||||| |||||| ||||| |||||||||||||||
seq2  TG--ATGAATGGAATTCCATC-AGTGTA-GAGTATTGGGAGTAGGGGTGG  89

seq1  GGAGAGAGGGAAGGTTAAGAGTGTGCTATGACTGTGGGTAAATAAGACTA  148
      |||||||||||| | | |||||||||||||||||||||||||||||||||
seq2  GGAGAGAGGGAAAGGTTAGAGTGTGCTATGACTGTGGGTAAATAAGACTA  139

seq1  GTTAGCAGGAGACTGGTGGTCTATAAAGAGGAGTGGTAGAGATCTCGGTG  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCA-GAGACTGGTGGTCTATAAAGAGGAGTGGTAGAGATCTCGGTG  188

seq1  TGATAGTGCTATGCCTGAGATTACAGCATGTGGGAGGTGGAAGCAGAATG  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGCTATG-CTGAGATTACAGCATGTGGGAGGTGGAAGCAGAATG  237

seq1  ATCAGGAGTTCAAAACTAGCCTCACCATACTCAAATAGTAAGTTTAAGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGTTCAAAACTAGCCTCACCATACTCAAATAGTAAGTTTAAGGC  287

seq1  CAACCTGGGATACAAATAATAAAAACTTTAAAGAGAAGGGTCTGATACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGGATACAAATAATAAAAACTTTAAAGAGAAGGGTCTGATACAA  337

seq1  CATGTGTCTGAAAGAAGTTAAGGGGGTTGTTGTTTGTCCTTTTTTATATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTGAAAGAAGTTAAGGGGGTTGTTGTTTGTCCTTTTTTATATC  387

seq1  TGTCATATTCTGTTTGTTTATTCCTTGGGACAGGATCTTGCTATGTAGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATTCTGTTTGTTTATTCCTTGGGACAGGATCTTGCTATGTAGCC  437

seq1  CAGGCTGGCCTAGAATTTGTGATTCCCCCAGCTCTAGTCTCTCAAGTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTAGAATTTGTGATTCCCCCAGCTCTAGTCTCTCAAGTATT  487

seq1  GGGATTGATTATAGGTGTGCACCACCGCCATACCTGGCTCACTTGCTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGATTATAGGTGTGCACCACCGCCATACCTGGCTCACTTGCTTAC  537

seq1  TTGCTTGTTTTTGTTTGTTTGTTTTTGGTTTTCCGAAACAGGGTTTCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTTTGTTTGTTTGTTTTTGGTTTTCCGAAACAGGGTTTCCTG  587

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  637

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACTGGGATCAAAGGCGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACTGGGATCAAAGGCGT  687

seq1  GCGCCACCACTGCCCGGCTTCCTTCCTTCCTTCCTTTCTCTTTTTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACCACTGCCCGGCTTCCTTCCTTCCTTCCTTTCTCTTTTTTTTTT  737

seq1  TTAAAGAAGGGAGAACATAAACATTTATAAATGCAGTAAGGAGAAGCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGGGAGAACATAAACATTTATAAATGCAGTAAGGAGAAGCAAG  787

seq1  GACATCACTTCCAGGTTTTGTGTAAGTGGCGTGTTTGAGGCAACATGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACTTCCAGGTTTTGTGTAAGTGGCGTGTTTGAGGCAACATGGCT  837

seq1  ACAGCTTGGAAGAATCCGAGAAAGGGTACAACCATAAATCTCTGAGCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGAAGAATCCGAGAAAGGGTACAACCATAAATCTCTGAGCATG  887

seq1  GAGTATTGAATGAGATTCTTCAGTCTCTTGGCCTTGTTTGCTCTGCTGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGAATGAGATTCTTCAGTCTCTTGGCCTTGTTTGCTCTGCTGCG  937

seq1  GTCTATAAAGCTTCGACCTGATGGAATTC  977
      |||||||||||||||||||||||||||||
seq2  GTCTATAAAGCTTCGACCTGATGGAATTC  966

seq1: chr5_73516473_73517315
seq2: B6Ng01-331B18.g_67_919

seq1  GAATTCTTCCCATACTCAGGAAAGACTAAAAACAATTGGGAGATGATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCATACTCAGGAAAGACTAAAAACAATTGGGAGATGATTGC  50

seq1  TTTGAATGCATTATAGGATTCGGACTTGGGAGCCAGGCATGGTAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGCATTATAGGATTCGGACTTGGGAGCCAGGCATGGTAATGCAA  100

seq1  GCTTACTATTCCAGCCTTGGGGGGTCCAAAGCAAAAGGACCAAGAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTATTCCAGCCTTGGGGGGTCCAAAGCAAAAGGACCAAGAGTTCA  150

seq1  AACCCAGGCTAGTCTACACAGCAACCTTAAGAAGAGCAAACAGAGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGCTAGTCTACACAGCAACCTTAAGAAGAGCAAACAGAGGAGGG  200

seq1  CTGAGAGAGCTTGTCATCTTTACTTAAATAACCTGAATCTGGACTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGCTTGTCATCTTTACTTAAATAACCTGAATCTGGACTGTGGG  250

seq1  AAAGCAACGGCCTGAAGCGAGTTACACTTACCCTTCCTTGTGTTTAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACGGCCTGAAGCGAGTTACACTTACCCTTCCTTGTGTTTAAAGT  300

seq1  GCTTAAAAGCTAGGTTTAGAACCTCATGGACTAAGGGGTCGGGCACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAGCTAGGTTTAGAACCTCATGGACTAAGGGGTCGGGCACAGGA  350

seq1  TGAACAGGAATCTAGAATTGAAAGAAAAACAACACCATGTCAGAAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGAATCTAGAATTGAAAGAAAAACAACACCATGTCAGAAGGCTT  400

seq1  AAGTAGCACAGTAGACATTCATGAATAGTCTTATCATTTCAATGCTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCACAGTAGACATTCATGAATAGTCTTATCATTTCAATGCTGTCA  450

seq1  ATCATCTGTTCCTGAGGCAATAAACATTTTAGAAGTAATTTAAGGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTTCCTGAGGCAATAAACATTTTAGAAGTAATTTAAGGAAAAT  500

seq1  GAACTCGATACGACTTTACACCTGTTTTGGGGGGCGGGGGTGGGGGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGATACGACTTTACACCTGTTTTGGGGGGCGGGGGTGGGGGGCAA  550

seq1  TGACGTCCGCCAAGAGCAATTTGGAAAGGTGATGGTAGTGACGAGGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCCGCCAAGAGCAATTTGGAAAGGTGATGGTAGTGACGAGGTTTC  600

seq1  CTATGCCTCGCTGGTGGGGCTGGTGGCACTTTCCACGCTGCACA-TACGC  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTATGCCTCGCTGGTGGGGCTGGTGGCACTTTCCACGCTGCACATTACGC  650

seq1  AAGTAAAGGCATGGCGGCACACTA-CCCACTCATTGCACT-GGGAGGTGC  697
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AAGTAAAGGCATGGCGGCACACTACCCCACTCATTGCACTGGGGAGGTGC  700

seq1  TGATTATTTTTAAGCTC-AAGGTAGA-TGAGAGACA-GATATAAAACGAT  744
      ||||||||||||||||| |||||||| ||||||||| |||||||||||||
seq2  TGATTATTTTTAAGCTCAAAGGTAGATTGAGAGACAGGATATAAAACGAT  750

seq1  GTACAGCTC-TCTC-TTCTGAGCTGTCTACAGTCAGGGTGTGAGCTTCAC  792
      ||||||||| |||| |||||| |||||||| ||||||||||||||||| |
seq2  GTACAGCTCTTCTCTTTCTGAACTGTCTACTGTCAGGGTGTGAGCTTCTC  800

seq1  TC-TTTGGAGGAC-TTCACCCCGACTAGGTGTGAAAGCTTCCCCAACCAG  840
      || |||||||||| ||||||||||||| |||||||||||| ||| |||||
seq2  TCTTTTGGAGGACTTTCACCCCGACTAAGTGTGAAAGCTTTCCCCACCAG  850

seq1  GAA  843
      |||
seq2  GAA  853