BAC Information

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BAC

Clone NameB6Ng01-331B20
Chromosome5 (Build37)
Map Location 12,035,282 - 12,134,150
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331B20.bB6Ng01-331B20.g
ACCGA117573GA117574
length1,1771,167
definitionB6Ng01-331B20.b B6Ng01-331B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,132,963 - 12,134,150)(12,035,282 - 12,036,450)
sequence
gaattctgacatcttcttgtagaaggggtcattctatatatcatccttag
tgaaaattgaccaataatcctgattctaagaaacacagtaagaaatatat
aacatattgattaacaacacgtgagagttggatgattgagtgagtcccct
tttagcataataccctaaggttgacaatactggtttcagtactttaagac
atcacatctgattatttgatgtgtcatgttcttttttccccctctctatt
tatctagtcttttcttctgtattttataaatacattgtaataaatcagta
agtcactcctaagaaaattaagtattcttctaaacaactgaagtccaaat
taaaaaaaaaatccgtatctctttaaactgttgtttgtttggtattggag
acaaaacccaaggcctagtgcatgagagtcacacactctatcactgagca
atatgtcagaggcagaaagaatatatttaacatccacaatgaaaagggtc
tgaagactgctcaagctgcagtcatagagttgtctctactgaactatgtc
atcccaaagataaggatccttgtcatgagcccttcaagtgatttttatta
ttttacatttcaattttcaggaattaaaaacatgatttatttatccattc
aacccactgtattatgattatcttgaagttttgttcaataaattaaagaa
catacccaagtttcctccagtcacattccatttaatgagaaaggccttaa
cagttcatgaaaaacaatttgcatacaaataaaaattcaccacataggtt
ttatgaacacttagatacaaaaaaacaaaacaaacaaacaaaaaaaacaa
acccccaaaacccaaaaacaaacaaacaaaaacccacattgggacagttt
ctttcacttatctggctttgttaaattaatgatcttttaaaaagtgtttt
gttttcataagtagcatagctttgagtgctagcagttatgagcacccaat
atattgactataaaaaactataatttctaatatagatgttcagaatgtta
gttgctaaatattgtggacctcacatagattacaaaagttctatgtcatg
aacaagtgctactatagatacatagagaagggattagctctcagcattga
gctcctggggaaagggaggaattatta
gaattctccattctccaaagtcaagaagcttcacacgagattcgttaaca
aaagaaccagggtgtttcccttttatgtcaatatagttttccatgcatca
ctcttgcatcaataacctcctctaggattttgattgcctaaactgttaaa
gaaactaaagatttatctgtgacttcttcagtggctatatttttaaattt
tagttttctgatagttttctatttatttttaattttttactgagtttaat
taaaaacaacttttcttagtaagaaactgactcagaagcaaaagactcca
cacagtgtatattctaattgaaatccatgttgcttttgttactaattatc
tacatgtgtgtatttgtatgttacacggaggcagtcatcattgtacatgt
atatctctatgtgacagcaccaagagaaaaaacttttgagttctattaca
acctactaacagaggtggtgaaaaattatgaaaaaagacagcatattgct
tttactatagatgctgactcttgggaggcgggggcaggagggagatcaga
aacaaagattataagtaagaacagtgaaaaaaaaaactaatacatctgaa
cttccttctagacaacaaatgataagaaacattgcagaaaaactgaaaaa
gactgattgttaatttaatacattcatattaacataatgaggccctttct
ctcttcctcaaatgtgattactgtggagtgagcctaaaactaaaattaat
atcacaaggaatagcgataatgtaaaagaaatttccataataaacctcct
ggagtaatagtgttaaaaaaaatacttatgctaccattttaatcttgatt
ctgaaacaattttccagttcaagttcaattgtgtaattaatctatattat
ctcacagtaatcctaaatttttatttgagtttactgttctttgtaaatgc
tttacaatataaatagaagatttaacctactaataaattctcatcagcga
cagcccatctagtagacaaagttattatacataaatgaagatagtactgc
taacatttgccaaggcaatccaaatgactaaggatctagaaaagcagttc
ctcagcagctatgcttcaaaaaatttaatgttcatcttaattgtaactat
acatggtgtggcataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12132963_12134150
seq2: B6Ng01-331B20.b_44_1220 (reverse)

seq1  TAATAATTCCTCCCTTCTCCCCAAGGGACGCCTCAATGCTG-GGGCTAAT  49
      |||||||||||||||| |||||| | |    |||||||||| | ||||||
seq2  TAATAATTCCTCCCTT-TCCCCAGGAG----CTCAATGCTGAGAGCTAAT  45

seq1  CCCTTTCTTCTATTGTATCTATAGTAGCAC-TGTTCATGACATAAGACTT  98
      |||||   |||| ||||||||||||||||| |||||||||||||  ||||
seq2  CCCTT--CTCTA-TGTATCTATAGTAGCACTTGTTCATGACATAGAACTT  92

seq1  TTGTAAATCTTATTGTGAGTTCCAC-ATATTTAGCAACTAACATTTCTGA  147
      |||| |||||   |||||| ||||| ||||||||||||||||| ||||||
seq2  TTGT-AATCT--ATGTGAGGTCCACAATATTTAGCAACTAACA-TTCTGA  138

seq1  ACATCTTATAATTAGAAATTATAGTTTTTTATAGTCAATATATTGGGTGC  197
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACATC-TAT-ATTAGAAATTATAGTTTTTTATAGTCAATATATTGGGTGC  186

seq1  TCATAACTGCTAGCACTCAAAGCTATGCTACTTATGAAAACAAAACACTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGCTAGCACTCAAAGCTATGCTACTTATGAAAACAAAACACTT  236

seq1  TTTAAAAGATCATTAATTTAACAAAGCCAGATAAGTGAAAGAAACTGTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATCATTAATTTAACAAAGCCAGATAAGTGAAAGAAACTGTCC  286

seq1  CAATGTGGGTTTTTGTTTGTTTGTTTTTGGGTTTTGGGGGTTTGTTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGGTTTTTGTTTGTTTGTTTTTGGGTTTTGGGGGTTTGTTTTTT  336

seq1  TTGTTTGTTTGTTTTGTTTTTTTGTATCTAAGTGTTCATAAAACCTATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTGTTTTTTTGTATCTAAGTGTTCATAAAACCTATGT  386

seq1  GGTGAATTTTTATTTGTATGCAAATTGTTTTTCATGAACTGTTAAGGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTTTATTTGTATGCAAATTGTTTTTCATGAACTGTTAAGGCCT  436

seq1  TTCTCATTAAATGGAATGTGACTGGAGGAAACTTGGGTATGTTCTTTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTAAATGGAATGTGACTGGAGGAAACTTGGGTATGTTCTTTAAT  486

seq1  TTATTGAACAAAACTTCAAGATAATCATAATACAGTGGGTTGAATGGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAACAAAACTTCAAGATAATCATAATACAGTGGGTTGAATGGATA  536

seq1  AATAAATCATGTTTTTAATTCCTGAAAATTGAAATGTAAAATAATAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCATGTTTTTAATTCCTGAAAATTGAAATGTAAAATAATAAAAA  586

seq1  TCACTTGAAGGGCTCATGACAAGGATCCTTATCTTTGGGATGACATAGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAAGGGCTCATGACAAGGATCCTTATCTTTGGGATGACATAGTT  636

seq1  CAGTAGAGACAACTCTATGACTGCAGCTTGAGCAGTCTTCAGACCCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGACAACTCTATGACTGCAGCTTGAGCAGTCTTCAGACCCTTTT  686

seq1  CATTGTGGATGTTAAATATATTCTTTCTGCCTCTGACATATTGCTCAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGATGTTAAATATATTCTTTCTGCCTCTGACATATTGCTCAGTG  736

seq1  ATAGAGTGTGTGACTCTCATGCACTAGGCCTTGGGTTTTGTCTCCAATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGTGTGACTCTCATGCACTAGGCCTTGGGTTTTGTCTCCAATAC  786

seq1  CAAACAAACAACAGTTTAAAGAGATACGGATTTTTTTTTTAATTTGGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAACAGTTTAAAGAGATACGGATTTTTTTTTTAATTTGGACT  836

seq1  TCAGTTGTTTAGAAGAATACTTAATTTTCTTAGGAGTGACTTACTGATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTTTAGAAGAATACTTAATTTTCTTAGGAGTGACTTACTGATTT  886

seq1  ATTACAATGTATTTATAAAATACAGAAGAAAAGACTAGATAAATAGAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATGTATTTATAAAATACAGAAGAAAAGACTAGATAAATAGAGAG  936

seq1  GGGGAAAAAAGAACATGACACATCAAATAATCAGATGTGATGTCTTAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAAGAACATGACACATCAAATAATCAGATGTGATGTCTTAAAG  986

seq1  TACTGAAACCAGTATTGTCAACCTTAGGGTATTATGCTAAAAGGGGACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAACCAGTATTGTCAACCTTAGGGTATTATGCTAAAAGGGGACTC  1036

seq1  ACTCAATCATCCAACTCTCACGTGTTGTTAATCAATATGTTATATATTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCATCCAACTCTCACGTGTTGTTAATCAATATGTTATATATTTC  1086

seq1  TTACTGTGTTTCTTAGAATCAGGATTATTGGTCAATTTTCACTAAGGATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTTCTTAGAATCAGGATTATTGGTCAATTTTCACTAAGGATG  1136

seq1  ATATATAGAATGACCCCTTCTACAAGAAGATGTCAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGAATGACCCCTTCTACAAGAAGATGTCAGAATTC  1177

seq1: chr5_12035282_12036450
seq2: B6Ng01-331B20.g_64_1230

seq1  GAATTCTCCATTCTCCAAAGTCAAGAAGCTTCACACGAGATTCGTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTCCAAAGTCAAGAAGCTTCACACGAGATTCGTTAACA  50

seq1  AAAGAACCAGGGTGTTTCCCTTTTATGTCAATATAGTTTTCCATGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCAGGGTGTTTCCCTTTTATGTCAATATAGTTTTCCATGCATCA  100

seq1  CTCTTGCATCAATAACCTCCTCTAGGATTTTGATTGCCTAAACTGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATCAATAACCTCCTCTAGGATTTTGATTGCCTAAACTGTTAAA  150

seq1  GAAACTAAAGATTTATCTGTGACTTCTTCAGTGGCTATATTTTTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGATTTATCTGTGACTTCTTCAGTGGCTATATTTTTAAATTT  200

seq1  TAGTTTTCTGATAGTTTTCTATTTATTTTTAATTTTTTACTGAGTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTGATAGTTTTCTATTTATTTTTAATTTTTTACTGAGTTTAAT  250

seq1  TAAAAACAACTTTTCTTAGTAAGAAACTGACTCAGAAGCAAAAGACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAACTTTTCTTAGTAAGAAACTGACTCAGAAGCAAAAGACTCCA  300

seq1  CACAGTGTATATTCTAATTGAAATCCATGTTGCTTTTGTTACTAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTATATTCTAATTGAAATCCATGTTGCTTTTGTTACTAATTATC  350

seq1  TACATGTGTGTATTTGTATGTTACACGGAGGCAGTCATCATTGTACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTGTATTTGTATGTTACACGGAGGCAGTCATCATTGTACATGT  400

seq1  ATATCTCTATGTGACAGCACCAAGAGAAAAAACTTTTGAGTTCTATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTATGTGACAGCACCAAGAGAAAAAACTTTTGAGTTCTATTACA  450

seq1  ACCTACTAACAGAGGTGGTGAAAAATTATGAAAAAAGACAGCATATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAACAGAGGTGGTGAAAAATTATGAAAAAAGACAGCATATTGCT  500

seq1  TTTACTATAGATGCTGACTCTTGGGAGGCGGGGGCAGGAGGGAGATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATAGATGCTGACTCTTGGGAGGCGGGGGCAGGAGGGAGATCAGA  550

seq1  AACAAAGATTATAAGTAAGAACAGTGAAAAAAAAAACTAATACATCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATTATAAGTAAGAACAGTGAAAAAAAAAACTAATACATCTGAA  600

seq1  CTTCCTTCTAGACAACAAATGATAAGAAACATTGCAGAAAAACTGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTAGACAACAAATGATAAGAAACATTGCAGAAAAACTGAAAAA  650

seq1  GACTGATTGTTAATTTAATACATTCATATTAACATAATGAGGCCCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTGTTAATTTAATACATTCATATTAACATAATGAGGCCCTTTCT  700

seq1  CTCTTCCTCAAATGTGATTACTGTGGAGTGAGCCTAAAACTAAAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCAAATGTGATTACTGTGGAGTGAGCCTAAAACTAAAATTAAT  750

seq1  ATCACAAGGAATAGCGATAATGTAAAAGAAATTTCCATAATAAACCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGAATAGCGATAATGTAAAAGAAATTTCCATAATAAACCTCCT  800

seq1  GGAGTAATAGTGTTAAAAAAAATACTTATGCTACCATTTTAATCTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATAGTGTTAAAAAAAATACTTATGCTACCATTTTAATCTTGATT  850

seq1  CTGAAACAATTTTCCAGTTCAAAGTTCAATTGTGTAATTAATCTATATTA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGAAACAATTTTCCAGTTC-AAGTTCAATTGTGTAATTAATCTATATTA  899

seq1  TCTCACAGTAATCCTAAATTTTTATTTGAGTTTACTGTTCTTTGTAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTAATCCTAAATTTTTATTTGAGTTTACTGTTCTTTGTAAATG  949

seq1  CTTTACAATATAAATAGAAGAATTAACCTACTAATAAATTCTCATCAGCG  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTTACAATATAAATAGAAGATTTAACCTACTAATAAATTCTCATCAGCG  999

seq1  ACAG-CCATCTAGTAGACAAAAGTTA-TATACATAAATGAGAATTAGTTA  1048
      |||| ||||||||||||| ||||||| ||||||||||||| |  ||| ||
seq2  ACAGCCCATCTAGTAGAC-AAAGTTATTATACATAAATGA-AGATAG-TA  1046

seq1  CTGCTAACATTTGCCAA-GCAATCCAAAATTGAACTAGGATCTAGAAAAG  1097
      ||||||||||||||||| ||||||||||  |||   ||||||||||||||
seq2  CTGCTAACATTTGCCAAGGCAATCCAAA--TGACTAAGGATCTAGAAAAG  1094

seq1  CAGTT-CTCAGCCAGCCTAATGCTTCAAAAA--TATATG-TCATCCTTTA  1143
      ||||| ||||| ||||   ||||||||||||  |  ||| |||||  |||
seq2  CAGTTCCTCAG-CAGC--TATGCTTCAAAAAATTTAATGTTCATC--TTA  1139

seq1  ATGGTAACTATACAT-GTGTGG-ATAAT  1169
      || |||||||||||| |||||| |||||
seq2  ATTGTAACTATACATGGTGTGGCATAAT  1167