BAC Information

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BAC

Clone NameB6Ng01-331J01
Chromosome5 (Build37)
Map Location 72,587,219 - 72,688,971
singlet/doubletdoublet
Overlap geneAtp10d
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J01.bB6Ng01-331J01.g
ACCGA117895GA117896
length1,1281,162
definitionB6Ng01-331J01.b B6Ng01-331J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,587,219 - 72,588,329)(72,687,790 - 72,688,971)
sequence
gaattccccacagttggctaagatttctttgaaaaaccacatcagctata
agtaaagctagatatccccaatatataaaaaatagaattttggagacaga
ttttccctcctagacctatataacattcccaagagttgctggggtattta
atacagttggacctagactccccttatcagcaccaaggggtaatttttca
tgaactccagataccccaggttccatgtaactgtcctgagctgaactatt
gctcttacatgtgttcctggcatgttggtgaagaggtctgatttgtataa
agcatatagcataggcaaggaatcagtttggatatgtatgtctattggac
atcgctttttgacatcagtcaaccttgtctatcaaagataggcttattcc
acctctgccccaaagccatttgcctcttcatagaggctggattccatttg
ctctcaaggtagaactgcttcaaatgtcttcactgtagctgtcagcggcc
atgggttactgggttcctgaaaggaaagctggggatggatgggaaggaca
gtgagagaaataaagagccaagacaaagttctctgatcaaggctcaaatt
ttaatgtgtagttttcaatatgtaactgaaaacccaaggacccatgcctt
tgtttctttcgtctgcgttctgttgctgtttcagctgaattgagttgcaa
agttaattcttcagcagctcagagggtgggcgggcgttctcaggtctctg
gtctctggtctctggcaggaagacttaatgtagcaaggccagacgcctgg
ctccagtgtcctcggaggtctgtttagccaactcaaggctgggggaaggg
cacactgcaccttggcaaagcctcccaaaatcatggcttctctggtcagt
agagaatacatatgatctagagacatgtgcacgtcttagtctcagctctg
acaaatcatctctacgtaagtcagagacaaatgaactaattttttttcta
ttctaaaggaccaatgcttccatactctattctagtccttgtaggacagt
ggatttttcttaaataagcataaagaagatccagcgcaagggttggctgg
cttatcctggaaactctggggtatgaaa
gaattcacggatccctgaagaactcggtaaagaaacctaggttacaaaga
acatcatagaattatgttcactcccattgcatcaggggacccatggagaa
tacttaaatacctaaagcatttttcaaatgcatggtgaggctaatctgta
aaataaatatatttcaaataagcttctttgataatgtttgcatcgagaag
acaattaaaattcctttacaaaaatcaaagtttcaaaaaaacaacacatt
ctcctgaattaaatattccagttcctaaactctgctctggtcaaacacta
tcctttgtttacaaatgtgctcacaggtatacaatgatagagaggttctt
ggtttttccatgccaagcaaaatgctgacatcccttgtacaaagccacaa
gtaatcctaacttctgagaggtgctcttctacatccttccaaacttgaag
gattgccagcaactctaagcagggtgtcctgcatgtttagcttgctgagg
atccagtcatcttggaggccccaggttcagagcagccacggtctagcgca
gtctcacgtgtgctctgctcaacagtagacactgttgctgacttcattgc
aaggacagcagaagacccaggtgttggtcttcctgacatagcagctgatt
ggctggcatgcttagatgccacgtgattgacctttgctgtccctctccac
ctcttgagagcttcagctctctcctctggaggtagtctgtcaaagtactt
ggctctgagaactggagatggaaacacggatccctgaagaactcggtaaa
gaaacctaggttacaaagaacatcatagaattatgttcactcccattgca
tcacgggacccatggagaatacttatcagttaaaaatatatatatatcac
ttggcttctgagataggcgaaggtaagtcaggtataaaatggagattaaa
aatattattaaactggggcggggtgttaagccctttataatttccacaac
tagaagtaaattagagggatagccatgagttcagtcactagctgtcagtg
agtttcaggcagtttggctactgtgcaacctggatttaaaactcgaatat
ttaatttacgcattaacttgatagcgttagcaaatgaaggaatctcctca
aaatgtcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72587219_72588329
seq2: B6Ng01-331J01.b_45_1172

seq1  GAATTCCCCACAGTTGGCTAAGATTTCTTTGAAAAACCACATCAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACAGTTGGCTAAGATTTCTTTGAAAAACCACATCAGCTATA  50

seq1  AGTAAAGCTAGATATCCCCAATATATAAAAAATAGAATTTTGGAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCTAGATATCCCCAATATATAAAAAATAGAATTTTGGAGACAGA  100

seq1  TTTTCCCTCCTAGACCTATATAACATTCCCAAGAGTTGCTGGGGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCCTAGACCTATATAACATTCCCAAGAGTTGCTGGGGTATTTA  150

seq1  ATACAGTTGGACCTAGACTCCCCTTATCAGCACCAAGGGGTAATTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGGACCTAGACTCCCCTTATCAGCACCAAGGGGTAATTTTTCA  200

seq1  TGAACTCCAGATACCCCAGGTTCCATGTAACTGTCCTGAGCTGAACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCAGATACCCCAGGTTCCATGTAACTGTCCTGAGCTGAACTATT  250

seq1  GCTCTTACATGTGTTCCTGGCATGTTGGTGAAGAGGTCTGATTTGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACATGTGTTCCTGGCATGTTGGTGAAGAGGTCTGATTTGTATAA  300

seq1  AGCATATAGCATAGGCAAGGAATCAGTTTGGATATGTATGTCTATTGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATAGCATAGGCAAGGAATCAGTTTGGATATGTATGTCTATTGGAC  350

seq1  ATCGCTTTTTGACATCAGTCAACCTTGTCTATCAAAGATAAGCTTATTCC  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCGCTTTTTGACATCAGTCAACCTTGTCTATCAAAGATAGGCTTATTCC  400

seq1  ACCTCTGCCCCAAAGCCATTTGCCTCTTCATAGAGGCTGGATTCCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCCCCAAAGCCATTTGCCTCTTCATAGAGGCTGGATTCCATTTG  450

seq1  CTCTCAAGGTAGAACTGCTTCAAATGTCTTCACTGTAGCTGTCAGCGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGGTAGAACTGCTTCAAATGTCTTCACTGTAGCTGTCAGCGGCC  500

seq1  ATGGGTTACTGGGTTCCTGAAAGGAAAGCTGGGGATGGATGGGAAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTACTGGGTTCCTGAAAGGAAAGCTGGGGATGGATGGGAAGGACA  550

seq1  GTGAGAGAAATAAAGAGCCAAGACAAAGTTCTCTGATCAAGGCTCAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAATAAAGAGCCAAGACAAAGTTCTCTGATCAAGGCTCAAATT  600

seq1  TTAATGTGTAGTTTTCAATATGTAACTGAAAACCCAAGGACCCATGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTAGTTTTCAATATGTAACTGAAAACCCAAGGACCCATGCCTT  650

seq1  TGTTTCTTTCGTCTGCGTTCTGTTGCTGTTTCAGCTGAATTGAGTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCGTCTGCGTTCTGTTGCTGTTTCAGCTGAATTGAGTTGCAA  700

seq1  AGTTAATTCTTCAGCAGCTCAGAGGGTGGGCGGGCGTTCTCAGGTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTCTTCAGCAGCTCAGAGGGTGGGCGGGCGTTCTCAGGTCTCTG  750

seq1  GTCTCTGGTCTCTGGCAGGAAGACTTAATGTAGCAAGGCCAGACGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGTCTCTGGCAGGAAGACTTAATGTAGCAAGGCCAGACGCCTGG  800

seq1  CTCCAGTGTCCTCGGAGGTCTGTTTAGCCAACTCAAGGCTGGGGGAAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGTCCTCGGAGGTCTGTTTAGCCAACTCAAGGCTGGGGGAAGGG  850

seq1  CACACTGCACCTTGGCAAAGCCTCCC-AAATCATGGCTTCTCTGGTCAGT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CACACTGCACCTTGGCAAAGCCTCCCAAAATCATGGCTTCTCTGGTCAG-  899

seq1  TAGAGAATACATATGATCTAGAGACATGTGCACGTCTTAGTCTCAGCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATACATATGATCTAGAGACATGTGCACGTCTTAGTCTCAGCTCT  949

seq1  GACCAAATCATCTCTACGTAAGTCAGAGACCAATGAACTA--TTTTTTTC  997
      || ||||||||||||||||||||||||||| |||||||||  ||||||||
seq2  GA-CAAATCATCTCTACGTAAGTCAGAGACAAATGAACTAATTTTTTTTC  998

seq1  TATTCTAAAGGACC-ATGC-TCCATACTCTATTCTAGTCC-TGT-GGACA  1043
      |||||||||||||| |||| |||||||||||||||||||| ||| |||||
seq2  TATTCTAAAGGACCAATGCTTCCATACTCTATTCTAGTCCTTGTAGGACA  1048

seq1  GTG--ATTTTCTTAA--TAGCATAA--GAGATCACGC---AGGGGTGGTG  1084
      |||   |||||||||   |||||||   |||||  ||   |||| |||  
seq2  GTGGATTTTTCTTAAATAAGCATAAAGAAGATCCAGCGCAAGGGTTGGCT  1098

seq1  GGCTTAT-CTGG-AACTCTGGGGTA-GAAA  1111
      ||||||| |||| |||||||||||| ||||
seq2  GGCTTATCCTGGAAACTCTGGGGTATGAAA  1128

seq1: chr5_72687790_72688971
seq2: B6Ng01-331J01.g_67_1227 (reverse)

seq1  GCAGG-CATTTCGAGGA---TCCTTCCTATTTGCTAACGCTAAACAAATA  46
      ||||| ||||| |||||   ||||||  ||||||||||||| | |||   
seq2  GCAGGACATTTTGAGGAGATTCCTTC--ATTTGCTAACGCT-ATCAA--G  45

seq1  TTAATTTCCTTAATATTTTAAAATTATTTTGAGTTTTTAAAATCAGGGTT  96
      ||||  | | ||| |||   ||||   || |||||||  |||||  ||  
seq2  TTAA--TGCGTAA-ATT---AAAT--ATTCGAGTTTT--AAATCCAGG--  83

seq1  TTGCACAGTAGCCCAAACTGGCCTGAAACTCACTGACAAGCTTAAGTTGG  146
      ||||||||||| ||||||| ||||||||||||||||| ||||  |||  |
seq2  TTGCACAGTAG-CCAAACT-GCCTGAAACTCACTGAC-AGCT--AGT--G  126

seq1  CCTTGAACTCATGGCTATCCCTCTAATTTAACCTTCTAAGTGTTGGAATT  196
       | |||||||||||||||||||||||||||  ||||||  ||| | ||||
seq2  AC-TGAACTCATGGCTATCCCTCTAATTTA--CTTCTAGTTGTGGAAATT  173

seq1  ATAAA-GGCTTAACACCCCG-CCCAGTTTAATAATATTTTTAATCTCCAT  244
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAAGGGCTTAACACCCCGCCCCAGTTTAATAATATTTTTAATCTCCAT  223

seq1  TTTATACCTGACTTACCTTCGCCTATCTCAGAAGCCAAGTGATATATATA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCTGACTTACCTTCGCCTATCTCAGAAGCCAAGTGATATATATA  273

seq1  TATTTTTAACTGATAAGTATTCTCCATGGGTCCCCTGATGCAATGGGAGT  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTTTTAACTGATAAGTATTCTCCATGGGTCCCGTGATGCAATGGGAGT  323

seq1  GAACATAATTCTATGATGTTCTTTGTAACCTAGGTTTCTTTACCGAGTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAATTCTATGATGTTCTTTGTAACCTAGGTTTCTTTACCGAGTTC  373

seq1  TTCAGGGATCCGTGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATCCGTGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGAC  423

seq1  AGACTACCTCCAGAGGAGAGAGCTGAAGCTCTCAAGAGGTGGAGAGGGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCTCCAGAGGAGAGAGCTGAAGCTCTCAAGAGGTGGAGAGGGAC  473

seq1  AGCAAAGGTCAATCACGTGGCATCTAAGCATGCCAGCCAATCAGCTGCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGTCAATCACGTGGCATCTAAGCATGCCAGCCAATCAGCTGCTA  523

seq1  TGTCAGGAAGACCAACACCTGGGTCTTCTGCTGTCCTTGCAATGAAGTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAAGACCAACACCTGGGTCTTCTGCTGTCCTTGCAATGAAGTCA  573

seq1  GCAACAGTGTCTACTGTTGAGCAGAGCACACGTGAGACTGCGCTAGACCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTGTCTACTGTTGAGCAGAGCACACGTGAGACTGCGCTAGACCG  623

seq1  TGGCTGCTCTGAACCTGGGGCCTCCAAGATGACTGGATCCTCAGCAAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTCTGAACCTGGGGCCTCCAAGATGACTGGATCCTCAGCAAGCT  673

seq1  AAACATGCAGGACACCCTGCTTAGAGTTGCTGGCAATCCTTCAAGTTTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCAGGACACCCTGCTTAGAGTTGCTGGCAATCCTTCAAGTTTGG  723

seq1  AAGGATGTAGAAGAGCACCTCTCAGAAGTTAGGATTACTTGTGGCTTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAGAAGAGCACCTCTCAGAAGTTAGGATTACTTGTGGCTTTGT  773

seq1  ACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTCTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTCTCT  823

seq1  ATCATTGTATACCTGTGAGCACATTTGTAAACAAAGGATAGTGTTTGACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTATACCTGTGAGCACATTTGTAAACAAAGGATAGTGTTTGACC  873

seq1  AGAGCAGAGTTTAGGAACTGGAATATTTAATTCAGGAGAATGTGTTGTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGTTTAGGAACTGGAATATTTAATTCAGGAGAATGTGTTGTTT  923

seq1  TTTTGAAACTTTGATTTTTGTAAAGGAATTTTAATTGTCTTCTCGATGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACTTTGATTTTTGTAAAGGAATTTTAATTGTCTTCTCGATGCA  973

seq1  AACATTATCAAAGAAGCTTATTTGAAATATATTTATTTTACAGATTAGCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCAAAGAAGCTTATTTGAAATATATTTATTTTACAGATTAGCC  1023

seq1  TCACCATGCATTTGAAAAATGCTTTAGGTATTTAAGTATTCTCCATGGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCATTTGAAAAATGCTTTAGGTATTTAAGTATTCTCCATGGGT  1073

seq1  CCCCTGATGCAATGGGAGTGAACATAATTCTATGATGTTCTTTGTAACCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGATGCAATGGGAGTGAACATAATTCTATGATGTTCTTTGTAACCT  1123

seq1  AGGTTTCTTTACCGAGTTCTTCAGGGATCCGTGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTTACCGAGTTCTTCAGGGATCCGTGAATTC  1161