BAC Information

Click to search

BAC

Clone NameB6Ng01-332P21
Chromosome5 (Build37)
Map Location 80,552,673 - 80,553,803
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P21.bB6Ng01-332P21.g
ACCGA118932GA118933
length1,131698
definitionB6Ng01-332P21.b B6Ng01-332P21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaaaataaaatttattcatcttgttatcgatccatcttactta
aaaacccaacttttgtacacattaatttactaacagaaagcaattttttc
atggtattttgaaatgcaacagtaatgtttcccgaagtatttcagccaaa
ttaaatagccatttaagaatatgggttgtgagccaggcagtggtcatgca
cgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtt
tgaggccagcctggtctacaaagtgagttccaggacagccagggctacac
agagaacccctgtcttgggaaaacaaaaacaaaagacaaaacaaaacaag
aatgtggattgtgatcagcaccttctgtggttgctgcatcgtgtattcca
aagataggtggtataaatggcagagagctcagtaagctacttaattctga
tgggaattttactcctttccctcacaaacagctgttggaggtttactgtg
gcataataatgatgccatgactattgccttgatagaacttcttaagggca
agcatagttttgtgctcccctgctgctggtactgaaaatctcaattgtct
taagattctcatattgctaatactaggggaattaaagtaagagcttgggt
agcctgaacacgtaccattgcagagggactgtgccctagagcgctcatat
cactggaggctttgcatagctcatgaataggtagtttttgaatgaactga
gaaatgtctttattcgtcttccatttctctcactaaattaaacgttgtgt
aaataaaactctaaatgttttttataattagttatttcaataaaatacct
atgccaaatgtagtgctaagtttacaagcagtgaaattaaaaaaaaaaaa
aaaagaaagaaagaaaagaaaaccaggtgattcagctaagtatacgtcag
acacttggggaatcagagacagcatttgatttctgggatagatactcagg
cactattattgagaaagaaaatatgcttatggggaaacttcccaaatgaa
tataaacatacattaaatatagaaacaatttataatgcctaaatgtagta
aaggtatgaacttatttaattatgtagatct

gaattcaaaaagctcaaaaagctgaagtgtcctagtgagtatgcctcagt
cccacttgtgagagagaagaaagcaatcacaactgaggaggaagggaggg
gcctgcgagggaatgtggacagtttggggggcagtagggaatgcggggaa
cctgatctgttattgggtggggaaagggtctgaagctgtgagggaaagaa
tgtaaacaggcaacctcaggaaataggaggttggaggaacccacagaatg
cacctgagtcctgagacttgagaaattcccaggactcatagagaggggcc
tttgatgaaatgccagacagtagggagaaggaacttatagagcccacctc
cagcagggagacaggacatcaagtgagggatggggtttctatcccacagt
catacctctgacccataattgtttctgtctgaaagaattacagggatgga
aatgaagagaatcctgaggaaaagaaggtccagcgacaggcccaaagtga
gtttccagcttaaggggaggtcccaaagatctaacactattactgaagct
atgaaatgctcacaaaaagggatctatcatgactaccctctgaaagactc
aacaaggcagctgaaaagagtcagatgtattttttttgtacccaaccaat
cgacagaaatcagcctgaccccttgttgttgaattgggggaggcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80552673_80553803
seq2: B6Ng01-332P21.b_49_1179 (reverse)

seq1  AGATCTACATAATT-AATAAGTTCATTACTTTTACTTACATTTA-GCATT  48
      |||||||||||||| |||||||||| ||| ||||| |||||||| |||||
seq2  AGATCTACATAATTAAATAAGTTCA-TACCTTTAC-TACATTTAGGCATT  48

seq1  ATAAATTGTTTCTATATTTAATGTATGTTTATA-TCATTTGGAAAGTTTC  97
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ATAAATTGTTTCTATATTTAATGTATGTTTATATTCATTTGGGAAGTTTC  98

seq1  CCCATAAGCATATTTTCTTTCTCAATAATAGTGCCTGAGTATCTATCCCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGCATATTTTCTTTCTCAATAATAGTGCCTGAGTATCTATCCCA  148

seq1  GAAATCAAATGCTGTCTTCCTGATTCCCCAAGTGTTCTGACGTATACTTA  197
      |||||||||||||||||  ||||||||||||||| |||||||||||||||
seq2  GAAATCAAATGCTGTCT--CTGATTCCCCAAGTG-TCTGACGTATACTTA  195

seq1  GCTGAATCACCTGGTTTTCTTTTCTTTCTTTC--TTTTTTTTTTTTTTAA  245
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GCTGAATCACCTGGTTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTAA  245

seq1  TTTCACTGCTTGTAAACTTAGCACTACATTTGGCATAGGTATTTTATTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGCTTGTAAACTTAGCACTACATTTGGCATAGGTATTTTATTGA  295

seq1  AATAACTAATTATAAAAAACATTTAGAGTTTTATTTACACAACGTTTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAATTATAAAAAACATTTAGAGTTTTATTTACACAACGTTTAAT  345

seq1  TTAGTGAGAGAAATGGAAGACGAATAAAGACATTTCTCAGTTCATTCAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGAGAAATGGAAGACGAATAAAGACATTTCTCAGTTCATTCAAA  395

seq1  AACTACCTATTCATGAGCTATGCAAAGCCTCCAGTGATATGAGCGCTCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTATTCATGAGCTATGCAAAGCCTCCAGTGATATGAGCGCTCTA  445

seq1  GGGCACAGTCCCTCTGCAATGGTACGTGTTCAGGCTACCCAAGCTCTTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGTCCCTCTGCAATGGTACGTGTTCAGGCTACCCAAGCTCTTAC  495

seq1  TTTAATTCCCCTAGTATTAGCAATATGAGAATCTTAAGACAATTGAGATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCCCCTAGTATTAGCAATATGAGAATCTTAAGACAATTGAGATT  545

seq1  TTCAGTACCAGCAGCAGGGGAGCACAAAACTATGCTTGCCCTTAAGAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACCAGCAGCAGGGGAGCACAAAACTATGCTTGCCCTTAAGAAGT  595

seq1  TCTATCAAGGCAATAGTCATGGCATCATTATTATGCCACAGTAAACCTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAAGGCAATAGTCATGGCATCATTATTATGCCACAGTAAACCTCC  645

seq1  AACAGCTGTTTGTGAGGGAAAGGAGTAAAATTCCCATCAGAATTAAGTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGTTTGTGAGGGAAAGGAGTAAAATTCCCATCAGAATTAAGTAG  695

seq1  CTTACTGAGCTCTCTGCCATTTATACCACCTATCTTTGGAATACACGATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGCTCTCTGCCATTTATACCACCTATCTTTGGAATACACGATG  745

seq1  CAGCAACCACAGAAGGTGCTGATCACAATCCACATTCTTGTTTTGTTTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACAGAAGGTGCTGATCACAATCCACATTCTTGTTTTGTTTTG  795

seq1  TCTTTTGTTTTTGTTTTCCCAAGACAGGGGTTCTCTGTGTAGCCCTGGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTTGTTTTCCCAAGACAGGGGTTCTCTGTGTAGCCCTGGCT  845

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTG  895

seq1  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATGACCACTGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCATGACCACTGC  945

seq1  CTGGCTCACAACCCATATTCTTAAATGGCTATTTAATTTGGCTGAAATAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCACAACCCATATTCTTAAATGGCTATTTAATTTGGCTGAAATAC  995

seq1  TTCGGGAAACATTACTGTTGCATTTCAAAATACCATGAAAAAATTGCTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGAAACATTACTGTTGCATTTCAAAATACCATGAAAAAATTGCTTT  1045

seq1  CTGTTAGTAAATTAATGTGTACAAAAGTTGGGTTTTTAAGTAAGATGGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTAAATTAATGTGTACAAAAGTTGGGTTTTTAAGTAAGATGGAT  1095

seq1  CGATAACAAGATGAATAAATTTTATTTTGTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  CGATAACAAGATGAATAAATTTTATTTTGTGAATTC  1131


| Home | SequenceCutter | Blast | Download |