BAC Information

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BAC

Clone NameB6Ng01-333D08
Chromosome5 (Build37)
Map Location 77,006,822 - 77,129,182
singlet/doubletdoublet
Overlap geneCep135, LOC100039117, A730089K16Rik
Upstream geneKit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1
Downstream geneLOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D08.bB6Ng01-333D08.g
ACCGA119086GA119087
length1,104978
definitionB6Ng01-333D08.b B6Ng01-333D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,128,073 - 77,129,182)(77,006,822 - 77,007,810)
sequence
gaattcatcagtttggctgggattgtctggccaatgcagggttccgcatg
tcacggggttacagacatatgtcaccggcttttacgtaagtgctgggatc
ccgactcagtccccatgcctgagccgcaggcactttcctgactgagccac
cttctcatcccccacacatgtgttaaacatgtttatcctcacaccattca
ttatgtcttcatagaaacacgcactatctagttttccctgtgtggttcag
cgctactctttggcaccctgctgtgcaccagccaccagagccagctctag
ctcataacaccctcatacccacaacccaccttttatcattttaataaaaa
cagtacgatactcagaggagacagcagcgagatgccagattcaaatagaa
gtcacccctagagaaaggaaaagaaggaggctggacttggcttttagtgg
cagatgctccaatgactaggaacctagcctttagccctttgcatgtggaa
actactcacaacagcataaagagaggaaggagaagaaaaccaggtggctt
ctctaagccaattgtgtcaaaacagaaggagctagatgtattgtagacac
agccctggagaaagagaaggctgaggcttgccttgaaccagaaaaggtct
gggttttaggcatggaggaaccccatcactagcctaggtaacttctgaat
aaaagtctatgcaaggaggaactgaatggtccactacaaatacagacttc
ataataggtggcgcccaaaggtccttccacatccaaggcttcacagtttc
ctattatatagggctctggtacaggcaacaagggaatggcataaatttcc
cccacccaggtcatacttaatccatattgaggatttgaaagcatcgtttg
cttaatttcctccaaatctcatgtttttatattcttcctgcccctcccct
atgtgctgagacagagtctctatacgtaatcttggctgtgttagaactca
ctatgtagaccaggttggctttgaactcacagagattcatctgctctgct
cctgagtgctgatattgaaggcatgtgctactatgctgctcatgtgtatt
ttat
gaattctccctttatggattcagaatgtggtggaatcactgagatgagat
gggaaccttccataacagagctttgccgggggaagttggttgctgggctg
tgttcttgaaggctctagcttgtcctgggctccttgtatggtttttggat
gccatatgtgaggatccttttctgtcacatgtgcccactgccattacagt
ttgagactgctgcaatctcaagtcaaaaatggatctctgctcccctgaaa
tggttcctctcaagtatctgacacagtgatgaaaagtgacagacatgtat
gcccatccttttcaggggttgagtatatttccatacttttgcctatatta
aatttatttttctactgaattctaatgtcaatcattttactatcaatttg
caaaagggaggtatttttaggtctatggtgttagttgtaaatatttttct
ggcttgttgtcatttggcatggaatgtgtgacatggagaaggcctgctat
ttggttggtttttaaattcagtaataattattgagtttttcactccttca
gagctccacacttacctctatttcttctcaatccaaacagtgaagaaaga
ctgagtcattgcactggtgttgaaatgaaaatgccccatgactttgtaga
cgaaaaatgaatttgctatgtcacagagatgctgtaggcctgttttttta
tttgttttgtttttgttgtgttttttttttcgagacagggtttctctgtg
tagccttggctgtcctggaactcactttgtagaccaggctggcctcgaac
tcagaattcacctgcttctgcctcctgagtgttgggattaaaggcgtgcg
ccaccatgccctgctaggctgcgtgatgttttaagctgatgggttctcag
agtatttcccagtgtcttctactagagaatagcttctcctacgcttactt
atccacacaggcaaacatcttttgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77128073_77129182
seq2: B6Ng01-333D08.b_50_1153 (reverse)

seq1  ATAAAATAACAACATGAGCCAGGCATAGTAGCACATGCCTTCAATATCAG  50
      ||||||||   ||||||||   ||||||||||||||||||||||||||||
seq2  ATAAAATA--CACATGAGC--AGCATAGTAGCACATGCCTTCAATATCAG  46

seq1  CACTCAGGAGGCAGAGGCAGATGAATCTCTGTGAGTTCAAAGCCAACCTG  100
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CACTCAGGA-GCAGA-GCAGATGAATCTCTGTGAGTTCAAAGCCAACCTG  94

seq1  GTCTACATAGTGAGTTCTAACACAGCCAAGATTACGTATAGAGACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATAGTGAGTTCTAACACAGCCAAGATTACGTATAGAGACTCTGT  144

seq1  CTCAGCACATAGGGGAGGGGCAGGAAGAATATAAAAACATGAGATTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACATAGGGGAGGGGCAGGAAGAATATAAAAACATGAGATTTGGA  194

seq1  GGAAATTAAGCAAACGATGCTTTCAAATCCTCAATATGGATTAAGTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAAGCAAACGATGCTTTCAAATCCTCAATATGGATTAAGTATGA  244

seq1  CCTGGGTGGGGGAAATTTATGCCATTCCCTTGTTGCCTGTACCAGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGGGGGAAATTTATGCCATTCCCTTGTTGCCTGTACCAGAGCCC  294

seq1  TATATAATAGGAAACTGTGAAGCCTTGGATGTGGAAGGACCTTTGGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAGGAAACTGTGAAGCCTTGGATGTGGAAGGACCTTTGGGCGC  344

seq1  CACCTATTATGAAGTCTGTATTTGTAGTGGACCATTCAGTTCCTCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTATGAAGTCTGTATTTGTAGTGGACCATTCAGTTCCTCCTTGC  394

seq1  ATAGACTTTTATTCAGAAGTTACCTAGGCTAGTGATGGGGTTCCTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTTTATTCAGAAGTTACCTAGGCTAGTGATGGGGTTCCTCCATG  444

seq1  CCTAAAACCCAGACCTTTTCTGGTTCAAGGCAAGCCTCAGCCTTCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACCCAGACCTTTTCTGGTTCAAGGCAAGCCTCAGCCTTCTCTTT  494

seq1  CTCCAGGGCTGTGTCTACAATACATCTAGCTCCTTCTGTTTTGACACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGCTGTGTCTACAATACATCTAGCTCCTTCTGTTTTGACACAAT  544

seq1  TGGCTTAGAGAAGCCACCTGGTTTTCTTCTCCTTCCTCTCTTTATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAGAAGCCACCTGGTTTTCTTCTCCTTCCTCTCTTTATGCTGT  594

seq1  TGTGAGTAGTTTCCACATGCAAAGGGCTAAAGGCTAGGTTCCTAGTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAGTTTCCACATGCAAAGGGCTAAAGGCTAGGTTCCTAGTCATT  644

seq1  GGAGCATCTGCCACTAAAAGCCAAGTCCAGCCTCCTTCTTTTCCTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTGCCACTAAAAGCCAAGTCCAGCCTCCTTCTTTTCCTTTCTC  694

seq1  TAGGGGTGACTTCTATTTGAATCTGGCATCTCGCTGCTGTCTCCTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTGACTTCTATTTGAATCTGGCATCTCGCTGCTGTCTCCTCTGAG  744

seq1  TATCGTACTGTTTTTATTAAAATGATAAAAGGTGGGTTGTGGGTATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTACTGTTTTTATTAAAATGATAAAAGGTGGGTTGTGGGTATGAGG  794

seq1  GTGTTATGAGCTAGAGCTGGCTCTGGTGGCTGGTGCACAGCAGGGTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGAGCTAGAGCTGGCTCTGGTGGCTGGTGCACAGCAGGGTGCCA  844

seq1  AAGAGTAGCGCTGAACCACACAGGGAAAACTAGATAGTGCGTGTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGCGCTGAACCACACAGGGAAAACTAGATAGTGCGTGTTTCTAT  894

seq1  GAAGACATAATGAATGGTGTGAGGATAAACATGTTTAACACATGTGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATAATGAATGGTGTGAGGATAAACATGTTTAACACATGTGTGGG  944

seq1  GGATGAGAAGGTGGCTCAGTCAGGAAAGTGCCTGCGGCTCAGGCATGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAAGGTGGCTCAGTCAGGAAAGTGCCTGCGGCTCAGGCATGGGG  994

seq1  ACTGAGTCGGGATCCCAGCACTTACGTAAAAGCCGGTGACATATGTCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCGGGATCCCAGCACTTACGTAAAAGCCGGTGACATATGTCTGT  1044

seq1  AACCCCGTGACATGCGGAACCCTGCATTGGCCAGACAATCCCAGCCAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGTGACATGCGGAACCCTGCATTGGCCAGACAATCCCAGCCAAAC  1094

seq1  TGATGAATTC  1110
      ||||||||||
seq2  TGATGAATTC  1104

seq1: chr5_77006822_77007810
seq2: B6Ng01-333D08.g_68_1045

seq1  GAATTCTCCCTTTATGGATTCAGAATGTGGTGGAATCACTGAGATGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTATGGATTCAGAATGTGGTGGAATCACTGAGATGAGAT  50

seq1  GGGAACCTTCCATAACAGAGCTTTGCCGGGGGAAGTTGGTTGCTGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTCCATAACAGAGCTTTGCCGGGGGAAGTTGGTTGCTGGGCTG  100

seq1  TGTTCTTGAAGGCTCTAGCTTGTCCTGGGCTCCTTGTATGGTTTTTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAGGCTCTAGCTTGTCCTGGGCTCCTTGTATGGTTTTTGGAT  150

seq1  GCCATATGTGAGGATCCTTTTCTGTCACATGTGCCCACTGCCATTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGTGAGGATCCTTTTCTGTCACATGTGCCCACTGCCATTACAGT  200

seq1  TTGAGACTGCTGCAATCTCAAGTCAAAAATGGATCTCTGCTCCCCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTGCTGCAATCTCAAGTCAAAAATGGATCTCTGCTCCCCTGAAA  250

seq1  TGGTTCCTCTCAAGTATCTGACACAGTGATGAAAAGTGACAGACATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCTCAAGTATCTGACACAGTGATGAAAAGTGACAGACATGTAT  300

seq1  GCCCATCCTTTTCAGGGGTTGAGTATATTTCCATACTTTTGCCTATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCCTTTTCAGGGGTTGAGTATATTTCCATACTTTTGCCTATATTA  350

seq1  AATTTATTTTTCTACTGAATTCTAATGTCAATCATTTTACTATCAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTCTACTGAATTCTAATGTCAATCATTTTACTATCAATTTG  400

seq1  CAAAAGGGAGGTATTTTTAGGTCTATGGTGTTAGTTGTAAATATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGAGGTATTTTTAGGTCTATGGTGTTAGTTGTAAATATTTTTCT  450

seq1  GGCTTGTTGTCATTTGGCATGGAATGTGTGACATGGAGAAGGCCTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTGTCATTTGGCATGGAATGTGTGACATGGAGAAGGCCTGCTAT  500

seq1  TTGGTTGGTTTTTAAATTCAGTAATAATTATTGAGTTTTTCACTCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTTTTAAATTCAGTAATAATTATTGAGTTTTTCACTCCTTCA  550

seq1  GAGCTCCACACTTACCTCTATTTCTTCTCAATCCAAACAGTGAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACACTTACCTCTATTTCTTCTCAATCCAAACAGTGAAGAAAGA  600

seq1  CTGAGTCATTGCACTGGTGTTGAAATGAAAATGCCCCATGACTTTGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATTGCACTGGTGTTGAAATGAAAATGCCCCATGACTTTGTAGA  650

seq1  CGAAAAATGAATTTGCTATGTCACAGAGATGCTGTAGGCCTGTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAATGAATTTGCTATGTCACAGAGATGCTGTAGGCCTGTTTTTTTA  700

seq1  TTTGTTTTGTTTTTGTTGTTGTTTTTTTTTTTCGAGACAGGGTTTCTCTG  750
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTGTTGT--GTTTTTTTTTTCGAGACAGGGTTTCTCTG  748

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  798

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGTTGGGATTAAAGGCGT  850
      |||||| ||| ||||||| |||||||||||||||||||||||||||||||
seq2  ACTCAG-AATTCACCTGCTTCTGCCTCCTGAGTGTTGGGATTAAAGGCGT  847

seq1  GCGCCACCATGCCCTGCTAGGCCTGCGTGATGTTTTTAAGGGTGATGGTT  900
      ||||||||||||||||||||| ||||||||||||||  | | |||||| |
seq2  GCGCCACCATGCCCTGCTAGG-CTGCGTGATGTTTT--AAGCTGATGGGT  894

seq1  TCCTCAGAGTAATTTCCCAGTGTCTTCTACTAGAGAATAGCTTCTCCTAA  950
      | |||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  T-CTCAGAGT-ATTTCCCAGTGTCTTCTACTAGAGAATAGCTTCTCCT-A  941

seq1  CGCCTACTTATCCACACAGTGCAGACATCCTTTTGTTGC  989
      ||| ||||||||||||||| ||| |||| ||||||||||
seq2  CGCTTACTTATCCACACAG-GCAAACAT-CTTTTGTTGC  978