BAC Information

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BAC

Clone NameB6Ng01-333D17
Chromosome5 (Build37)
Map Location 57,646,199 - 57,647,356
singlet/doubletsinglet
Overlap geneLOC666455
Upstream geneLOC100041335, LOC100041349
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D17.bB6Ng01-333D17.g
ACCGA119102GA119103
length1,2401,146
definitionB6Ng01-333D17.b B6Ng01-333D17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatagcaaatgtatgagaagtaactgaaaaaaat
gttcaacttccttaatcattagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggttaagttcaaaaattcaggtgacag
cagatgctggtgagaatgtggagaaagaggaacactcctccattgttggt
gggatttcaagctggtacaaccactctggaaatcagtctggcaattcctc
agaaaattggatctattagtaccagaagctccagcaatacctctcttggg
cattgtcttagtcaggttttctattcctgcacaaacatcatgaccaagaa
gcaagttggggaggaaagggtttattcggcttatacttccatgctgctgt
tcatcaccaaaagaagtcaggaccggagctcaagcaggtcagaaaacagg
ggctgatgcagaatacatggagggatgttctttactggcttgctttccct
tgcttgctcagcctagtctcttatagaacccaagactaccagcccagaga
tggcaccacccacaaggggcaaatggatggatctggagaatatcatcctg
cgtgaggtaacccaatcacaaaagaacacacattatatgcactcactgat
aagtggatataattccagaaacttagaatacccaagatacaatttgtaaa
actcatggaactcaaggaaaaggaagaccaaagtgtggaaatttgttcct
tcttagaaggggtaacaaaatacatatggaagtagttacagagacaaagt
ttggagctgagatggaaggaagaaccattcagagactgccacacctggag
atccaacccacaaacaaccatcaaacccagacactatttattgcatatgc
cagcaaggttttgctgacaggaccctgatatagttgtctcttgtgatgct
atgccattgcctggcaagtacagaagtggatgctcactgtcatctactgc
atggaacacaggtcccaaatgaagagctagaagaaagtactcaaggagct
aaatgtgtctgcaaccctatagagaacaacaatatgactaccagtacccc
agagcttgcatcttagtgcatatgtagcagtgatggcatacaggcatcat
gggagagagtctttgcctgtaagattatatgttcaagttcaggcaatatc
cagaacagaaagtgtagaagagtggtggtggtttggagac

gaattcataagaggataatacatgaaaaccaaatatctcatttacataca
aaatatgtgcataagtttttgtaaagcaaattattaagtattatatttta
agtattttaagtattatatattctaggttatcctgaagacatgtaattta
tatactgcctaatgttttcctagtgcccctatttgtacattcagtactaa
tattattatattttaagtaaaccttatgagtatctaaaataaatgctata
catattactgtaaacccatttacggacatacaaaatacagttctctaatt
agaaacaaagaaattttgttgaaaatcattacttttatgacaggattggt
ttttactaaaataaacaaataattgaagaaattgacaatcacatccatac
tcaataagttaatccatatgatcctatgctaaaaactaaatgaacagata
cagatagctgatgtcatcccgctgtccttttgcaaaacgaaatgtgtcta
gaaaatgacctttttatggatgccattatgttactccccaattggtgtac
aatattaggggaataaatcaatcattacagttaattcaagtggaaactgt
gtcagtctttcaaaaccttatgaggaaaagtttggaaggatagtttgttt
gtcttgtataaatatcaacaatcagaaaaaccaagcttattttaaaatat
agcataaatgatgttaaaactgttaaagctaataactaagaaattattag
caagagatccctaccttaaaacttctgataagtctgaattttgacaatca
ctgcagtattcattattatttatgttcctggtgtgaatatcatttcctaa
cagaggtcctaccgagtatcttttaatatctgtgcacaaatttttttttt
agttgtgctcattaaaacatgttacttatgtttctatcattaaagaagat
ccaagaggacagacatagttcatatctatatatgtattacatatcatctc
caaactacactttttatgatattcagattaaactatacttaacaacttgt
ctaaatctatattctaagtacttcaaaggacatatctatattttttatct
gaagaaatatattttatatagacatgtgttgtgttttttcaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57646199_57647356
seq2: B6Ng01-333D17.g_65_1210

seq1  GAATTCATAAGAGGATAATACATGAAAACCAAATATCTCATTTACATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGAGGATAATACATGAAAACCAAATATCTCATTTACATACA  50

seq1  AAATATGTGCATAAGTTTTTGTAAAGCAAATTATTAAGTATTATATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGCATAAGTTTTTGTAAAGCAAATTATTAAGTATTATATTTTA  100

seq1  AGTATTTTAAGTATTATATATTCTAGGTTATCCTGAAGACATGTAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAAGTATTATATATTCTAGGTTATCCTGAAGACATGTAATTTA  150

seq1  TATACTGCCTAATGTTTTCCTAGTGCCCCTATTTGTACATTCAGTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCCTAATGTTTTCCTAGTGCCCCTATTTGTACATTCAGTACTAA  200

seq1  TATTATTATATTTTAAGTAAACCTTATGAGTATCTAAAATAAATGCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATATTTTAAGTAAACCTTATGAGTATCTAAAATAAATGCTATA  250

seq1  CATATTACTGTAAACCCATTTACGGACATACAAAATACAGTTCTCTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACTGTAAACCCATTTACGGACATACAAAATACAGTTCTCTAATT  300

seq1  AGAAACAAAGAAATTTTGTTGAAAATCATTACTTTTATGACAGGATTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAGAAATTTTGTTGAAAATCATTACTTTTATGACAGGATTGGT  350

seq1  TTTTACTAAAATAAACAAATAATTGAAGAAATTGACAATCACATCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAAAATAAACAAATAATTGAAGAAATTGACAATCACATCCATAC  400

seq1  TCAATAAGTTAATCCATATGATCCTATGCTAAAAACTAAATGAACAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGTTAATCCATATGATCCTATGCTAAAAACTAAATGAACAGATA  450

seq1  CAGATAGCTGATGTCATCCCGCTGTCCTTTTGCAAAACGAAATGTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTGATGTCATCCCGCTGTCCTTTTGCAAAACGAAATGTGTCTA  500

seq1  GAAAATGACCTTTTTATGGATGCCATTATGTTACTCCCCAATTGGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACCTTTTTATGGATGCCATTATGTTACTCCCCAATTGGTGTAC  550

seq1  AATATTAGGGGAATAAATCAATCATTACAGTTAATTCAAGTGGAAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGGGGAATAAATCAATCATTACAGTTAATTCAAGTGGAAACTGT  600

seq1  GTCAGTCTTTCAAAACCTTATGAGGAAAAGTTTGGAAGGATAGTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTTCAAAACCTTATGAGGAAAAGTTTGGAAGGATAGTTTGTTT  650

seq1  GTCTTGTATAAATATCAACAATCAGAAAAACCAAGCTTATTTTAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTATAAATATCAACAATCAGAAAAACCAAGCTTATTTTAAAATAT  700

seq1  AGCATAAATGATGTTAAAACTGTTAAAGCTAATAACTAAGAAATTATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATGATGTTAAAACTGTTAAAGCTAATAACTAAGAAATTATTAG  750

seq1  CAAGAGATCCCTACCTTAAAACTTCTGATAAGTCTGAATTTTGACAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATCCCTACCTTAAAACTTCTGATAAGTCTGAATTTTGACAATCA  800

seq1  CTGCAGTATTCATTATTATTTATGTTCCTGGTGTGAATATCATTTCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTATTCATTATTATTTATGTTCCTGGTGTGAATATCATTTCCTAA  850

seq1  CAGAGGTCCTACCGAGTATCTTTTAATATCTGTGCACAAA-TTTTATTTT  899
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  CAGAGGTCCTACCGAGTATCTTTTAATATCTGTGCACAAATTTTTTTTTT  900

seq1  AGTTG---TCATT-AAACATGTTACTTATGTTTCTATCATTAAAGAAGAT  945
      |||||   ||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGCTCATTAAAACATGTTACTTATGTTTCTATCATTAAAGAAGAT  950

seq1  CCAAGAGGACAGACATAGTTCATATCTATATATTGTTATTCATATCATCT  995
      |||||||||||||||||||||||||||||||| |||  | ||||||||||
seq2  CCAAGAGGACAGACATAGTTCATATCTATATA-TGTATTACATATCATCT  999

seq1  CCAAAACTACAACTTTTTATGATATTCAGGATTTAAACTATAACTTTAAA  1045
      || ||||||| ||||||||||||||||||   ||||||||| ||||  ||
seq2  CC-AAACTAC-ACTTTTTATGATATTCAG--ATTAAACTAT-ACTT--AA  1042

seq1  CAACTTGTCTTAAATCTATATCTAAAGTACTTCAAAAGGACATAATCTAT  1095
      ||||||||| |||||||||||   ||||||||| ||||||||| ||||||
seq2  CAACTTGTC-TAAATCTATATTCTAAGTACTTC-AAAGGACAT-ATCTAT  1089

seq1  ATTTTTTATTCTGAAAAGAATATATTTATTATAAGAACATTGTGTTGTGT  1145
      |||||||| |||||| | ||||||||  |||||   ||| ||||||||||
seq2  ATTTTTTA-TCTGAAGA-AATATATT--TTATATAGACA-TGTGTTGTGT  1134

seq1  TTTTTAAAAACAA  1158
      |||||  ||||||
seq2  TTTTT-CAAACAA  1146


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