BAC Information

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BAC

Clone NameB6Ng01-333H07
Chromosome5 (Build37)
Map Location 46,311,550 - 46,490,627
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333H07.bB6Ng01-333H07.g
ACCGA119255GA119256
length1,1801,177
definitionB6Ng01-333H07.b B6Ng01-333H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,311,550 - 46,312,730)(46,489,459 - 46,490,627)
sequence
gaattctatggaagtggagtccctgaagtttcattaatatttctgtgttg
gttcaaactttattgtatagctgttcattatccgactttctctgagtaaa
ccttatttaatctttaaaaatttctttgactctgacatgctctattttac
cctggggcatttatcagtgctgtccttgggctaaatattcacatagttat
ccctgattatccaagtctgatattaaaccattctttcatattgtcaatat
tattcattaatatgttatgtagtcttaataaaaaccaatgatggataatc
tcatggtgtgatgtatcaagaagaaatctatattctacccagcatactca
gtacatatgtgctctattgcatctgtgttcactgttggaggaatgtctgt
gagaaaaaggactttctcctttctcttttatgtggtcctacctccaggca
cagttcctggaacagttgagaaatatttcttgaaatgtcaaaattgtaaa
gtagaattctttaggctgagggcatggtatcagtaaagagaatcttaaag
gatggaaaattaaactgcttgagagtcaaagctggaggagtcagaattca
atgttttaagtcaatgcttatcagctgcgtggccactggtcattgtttag
aatttctgtgtcttggtttcttcacctgaaaattgtgagtaacagtactg
tcaacaccatatgggttgtgtaaattcaataggttaaaacatatccttag
aacagtgtctaatgcacagtaagcagccagacttttaattatgaaaattc
agagattatttttgtattattattttaatattattattattaataatagt
tgggcttttgttgttgattttgtttttttttgttttttgtttttttgttt
tttgcccttacatctttcgcatcactctagcattaagaacccaacaaaag
gttgagtttgagtaaaggattttagagatcaggattcaactctctatttt
tccaggagagaagaattggtgtagaaagattaatcactcagcagttcagc
aggatcagggtgagaatgccaaacccctgctacatcagactggggctagt
gtagaactggggtgaggtgggtgcccatgagtgaaagcgggagttaaggt
agcttggctgcctcctgatgaccagctctg

gaattctcacctgaggaataccgaatgacagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaactcaaaataaccctgagat
tccaactcacagcagtcagaatgggtaaattcaggtgacagcagatgctg
gcgaggatgtggagaaagagtaacactccttcattgttggtgggattgca
agcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg
tacataatactaccagaggatccagcaatacctctcctgggcatatatcc
agaatatgttccaaccggtaagaaggacacatgctccactatgttcatct
taataattcttaagccctgttccaatatccagttgtcccatggctttaag
tgtctggtaagagtggcatttcatggcaggagcatgtgaccaagcaaact
ccacattttgtgatttggaaaacaatcatgagaaatacaaggaagggcta
gtttctcaaaaataggctttatggacttgacttcaatgatttcaatgact
tcatgaccttagataaggccctgccttcaaaaggttccgtctatcccaag
attgccaccctgaggatgaaacctttatgcctggagcccatggactacac
tacctatcttgaaagcatgcatcacattgctaaggcccttgttactttcc
taaagaagaatctcaaattgggcaagagtaaattcctttatctgactgtc
aagatttaattaagttgattcaattaagtttattcttctgtacaccaaat
tacagatagcatactttcctgaaaagtctaactcctttaacatgttttaa
aaagaccttctaagagtccacagaggtgtttcttcacagttcattgtttt
ctttgcattatgattattgcattgctccataatgtaaaagaaatttaaaa
ggatagttgaagagcaaggaaatccacagccatgctttcattccttcgat
aagacacgagccaggtcatttaatctgacaaagcataccagggtagatct
tggtagaaatctctagctgatgcaggccacgttggagtaaactctccatt
cttctagttcagaaggttggcatagatgtttaactatttagaagatgcag
aacatattttggctttcccgtactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46311550_46312730
seq2: B6Ng01-333H07.b_49_1228

seq1  GAATTCTATGGAAGTGGAGTCCCTGAAGTTTCATTAATATTTCTGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGAAGTGGAGTCCCTGAAGTTTCATTAATATTTCTGTGTTG  50

seq1  GTTCAAACTTTATTGTATAGCTGTTCATTATCCGACTTTCTCTGAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACTTTATTGTATAGCTGTTCATTATCCGACTTTCTCTGAGTAAA  100

seq1  CCTTATTTAATCTTTAAAAATTTCTTTGACTCTGACATGCTCTATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTAATCTTTAAAAATTTCTTTGACTCTGACATGCTCTATTTTAC  150

seq1  CCTGGGGCATTTATCAGTGCTGTCCTTGGGCTAAATATTCACATAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCATTTATCAGTGCTGTCCTTGGGCTAAATATTCACATAGTTAT  200

seq1  CCCTGATTATCCAAGTCTGATATTAAACCATTCTTTCATATTGTCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTATCCAAGTCTGATATTAAACCATTCTTTCATATTGTCAATAT  250

seq1  TATTCATTAATATGTTATGTAGTCTTAATAAAAACCAATGATGGATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTAATATGTTATGTAGTCTTAATAAAAACCAATGATGGATAATC  300

seq1  TCATGGTGTGATGTATCAAGAAGAAATCTATATTCTACCCAGCATACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTGATGTATCAAGAAGAAATCTATATTCTACCCAGCATACTCA  350

seq1  GTACATATGTGCTCTATTGCATCTGTGTTCACTGTTGGAGGAATGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATGTGCTCTATTGCATCTGTGTTCACTGTTGGAGGAATGTCTGT  400

seq1  GAGAAAAAGGACTTTCTCCTTTCTCTTTTATGTGGTCCTACCTCCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGGACTTTCTCCTTTCTCTTTTATGTGGTCCTACCTCCAGGCA  450

seq1  CAGTTCCTGGAACAGTTGAGAAATATTTCTTGAAATGTCAAAATTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTGGAACAGTTGAGAAATATTTCTTGAAATGTCAAAATTGTAAA  500

seq1  GTAGAATTCTTTAGGCTGAGGGCATGGTATCAGTAAAGAGAATCTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTCTTTAGGCTGAGGGCATGGTATCAGTAAAGAGAATCTTAAAG  550

seq1  GATGGAAAATTAAACTGCTTGAGAGTCAAAGCTGGAGGAGTCAGAATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAATTAAACTGCTTGAGAGTCAAAGCTGGAGGAGTCAGAATTCA  600

seq1  ATGTTTTAAGTCAATGCTTATCAGCTGCGTGGCCACTGGTCATTGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAAGTCAATGCTTATCAGCTGCGTGGCCACTGGTCATTGTTTAG  650

seq1  AATTTCTGTGTCTTGGTTTCTTCACCTGAAAATTGTGAGTAACAGTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTGTCTTGGTTTCTTCACCTGAAAATTGTGAGTAACAGTACTG  700

seq1  TCAACACCATATGGGTTGTGTAAATTCAATAGGTTAAAACATATCCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCATATGGGTTGTGTAAATTCAATAGGTTAAAACATATCCTTAG  750

seq1  AACAGTGTCTAATGCACAGTAAGCAGCCAGACTTTTAATTATGAAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTCTAATGCACAGTAAGCAGCCAGACTTTTAATTATGAAAATTC  800

seq1  AGAGATTATTTTTGTATTATTATTTTAATATTATTATTATTAATAATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATTTTTGTATTATTATTTTAATATTATTATTATTAATAATAGT  850

seq1  TGGGCTTTTGTTGTTGATTTTGTTTTTTTTTGTTTTTTGTTTTTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGGCTTTTGTTGTTGATTTTGTTTTTTTTTGTTTTTTGTTTTTTTG-TT  899

seq1  TTTTGCCTTTACATCTTTCGCATCACTCTAGCATTAAGAACCCAACAAAA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCTTACATCTTTCGCATCACTCTAGCATTAAGAACCCAACAAAA  949

seq1  GGTTGAGTTTGAGTAAAGGATTTTAGAGATCAGGAATTCAAACTCTCTA-  999
      |||||||||||||||||||||||||||||||||| |||| ||||||||| 
seq2  GGTTGAGTTTGAGTAAAGGATTTTAGAGATCAGG-ATTC-AACTCTCTAT  997

seq1  TTTTCCAGAGGAGAAGAATTGGTGTAGAAAAGATTAAATCACTCAGCCAG  1049
      ||||||||  ||||||||||||||||| ||||||| |||||||||| |||
seq2  TTTTCCAGGAGAGAAGAATTGGTGTAG-AAAGATT-AATCACTCAG-CAG  1044

seq1  TTCAGCAGGACCAGGGTGAGAATGCAAAACCCCTGCTACATCAGACTGGG  1099
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  TTCAGCAGGATCAGGGTGAGAATGCCAAACCCCTGCTACATCAGACTGGG  1094

seq1  GCTAGTGTAGAACTGGGGTGAGGTGGGTG-CCATGAGTG-AAGCGGGAGG  1147
      ||||||||||||||||||||||||||||| ||||||||| ||||||||| 
seq2  GCTAGTGTAGAACTGGGGTGAGGTGGGTGCCCATGAGTGAAAGCGGGAGT  1144

seq1  TAAGGTAGC-TGGCTG-CTCCTGATGACCAGGTCTG  1181
      ||||||||| |||||| |||||||||||||| ||||
seq2  TAAGGTAGCTTGGCTGCCTCCTGATGACCAGCTCTG  1180


seq1: chr5_46489459_46490627
seq2: B6Ng01-333H07.g_68_1244 (reverse)

seq1  TATAGTACGGGAAAGGCCAAAATATGCTCTGCCATTCTCTTAATAG-TAA  49
      |||||||||||||| ||||||||||| |||| |||  ||| ||||| |||
seq2  TATAGTACGGGAAA-GCCAAAATATGTTCTG-CATCTTCTAAATAGTTAA  48

seq1  ACATATATGCCAACC-TCTGAACTAGAAGAATGGAGAGTTTTACT-CAAC  97
      |||| |||||||||| |||||||||||||||||||||| |||||| ||||
seq2  ACATCTATGCCAACCTTCTGAACTAGAAGAATGGAGAG-TTTACTCCAAC  97

seq1  GTGGCCTGCATCAGCTAGAGATTTCTACCAAGATCTA-CCTGGTAT-CTT  145
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GTGGCCTGCATCAGCTAGAGATTTCTACCAAGATCTACCCTGGTATGCTT  147

seq1  TGGCAGATTTAAATGGCCT-----GTG-CTT-TCTAAGGAAT-AAGGCAT  187
      || |||| ||||||| |||     ||| ||| || ||||||| || ||||
seq2  TGTCAGA-TTAAATGACCTGGCTCGTGTCTTATCGAAGGAATGAAAGCAT  196

seq1  GGCTGTGGATTTCCTTGCTCTTCAACTATCCTTTTTAAATTTCTTTTACA  237
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTGTGGATTTCCTTGCTCTTCAACTATCC-TTTTAAATTTCTTTTACA  245

seq1  TTATGGAGCAATGCAATAATCATAATGCAAAGAAAACAATGAACTGTGAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGCAATGCAATAATCATAATGCAAAGAAAACAATGAACTGTGAA  295

seq1  GAAACACCTCTGTGGACTCTTAGAAGGTCTTTTTAAAACATGTTAAAGGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCTCTGTGGACTCTTAGAAGGTCTTTTTAAAACATGTTAAAGGA  345

seq1  GTTAGACTTTTCAGGAAAGTATGCTATCTGTAATTTGGTGTACAGAAGAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTTTTCAGGAAAGTATGCTATCTGTAATTTGGTGTACAGAAGAA  395

seq1  TAAACTTAATTGAATCAACTTAATTAAATCTTGACAGTCAGATAAAGGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAATTGAATCAACTTAATTAAATCTTGACAGTCAGATAAAGGAA  445

seq1  TTTACTCTTGCCCAATTTGAGATTCTTCTTTAGGAAAGTAACAAGGGCCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTTGCCCAATTTGAGATTCTTCTTTAGGAAAGTAACAAGGGCCT  495

seq1  TAGCAATGTGATGCATGCTTTCAAGATAGGTAGTGTAGTCCATGGGCTCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTGATGCATGCTTTCAAGATAGGTAGTGTAGTCCATGGGCTCC  545

seq1  AGGCATAAAGGTTTCATCCTCAGGGTGGCAATCTTGGGATAGACGGAACC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAAGGTTTCATCCTCAGGGTGGCAATCTTGGGATAGACGGAACC  595

seq1  TTTTGAAGGCAGGGCCTTATCTAAGGTCATGAAGTCATTGAAATCATTGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGGCAGGGCCTTATCTAAGGTCATGAAGTCATTGAAATCATTGA  645

seq1  AGTCAAGTCCATAAAGCCTATTTTTGAGAAACTAGCCCTTCCTTGTATTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTCCATAAAGCCTATTTTTGAGAAACTAGCCCTTCCTTGTATTT  695

seq1  CTCATGATTGTTTTCCAAATCACAAAATGTGGAGTTTGCTTGGTCACATG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATTGTTTTCCAAATCACAAAATGTGGAGTTTGCTTGGTCACATG  745

seq1  CTCCTGCCATGAAATGCCACTCTTACCAGACACTTAAAGCCATGGGACAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCATGAAATGCCACTCTTACCAGACACTTAAAGCCATGGGACAA  795

seq1  CTGGATATTGGAACAGGGCTTAAGAATTATTAAGATGAACATAGTGGAGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATTGGAACAGGGCTTAAGAATTATTAAGATGAACATAGTGGAGC  845

seq1  ATGTGTCCTTCTTACCGGTTGGAACATATTCTGGATATATGCCCAGGAGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTTCTTACCGGTTGGAACATATTCTGGATATATGCCCAGGAGA  895

seq1  GGTATTGCTGGATCCTCTGGTAGTATTATGTACAATTTTCTGAGGAACCG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGCTGGATCCTCTGGTAGTATTATGTACAATTTTCTGAGGAACCG  945

seq1  CCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAAT  995

seq1  GAAGGAGTGTTACTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTGTTACTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCT  1045

seq1  GAATTTACCCATTCTGACTGCTGTGAGTTGGAATCTCAGGGTTATTTTGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACCCATTCTGACTGCTGTGAGTTGGAATCTCAGGGTTATTTTGA  1095

seq1  GTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTC  1145

seq1  TCTGTCATTCGGTATTCCTCAGGTGAGAATTC  1169
      ||||||||||||||||||||||||||||||||
seq2  TCTGTCATTCGGTATTCCTCAGGTGAGAATTC  1177


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