BAC Information

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BAC

Clone NameB6Ng01-333I04
Chromosome5 (Build37)
Map Location 82,677,183 - 82,678,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333I04.bB6Ng01-333I04.g
ACCGA119292GA119293
length1,174910
definitionB6Ng01-333I04.b B6Ng01-333I04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagatatatgatcaggagcaaggtcaaaaaatagttgaacctg
aacactttttgtgccttagaaaacaaaaaaacaattaatccatttggatg
cttatttactcattggatatgtatgtggggtgctcagtatgcacatgtga
tgatgtaagaaatttcagaagatatgtatgagttggatccatctttctac
catattggtttcagggatggtataccgattggcaggattagacataagca
attgtactccccatgccatatttttgaccaataaaataatttttaatttg
gaggaagaaagaacacataagaataaaactgaacatattagcttgatttt
tagagtcttgttataagatgagagcaatcagtacaaccctctgtgtcatt
gggtgaatatattatctcactacacatttatttattaataaacagtatag
ttatctcttaatcactgctaataaagattggtgggatatattttcatgtt
atgatatcttcatataattaaaaataatggtgtaagtggttaaatagaaa
ttagttaaaatattttggattaactgtgggatgatgaaatctacacagta
aactgaagaacttgtctataagggtcatgtcagaggatcctgaagtctac
atacatggcatgaaagtggaggtcgtactttaaatataaaaataaatata
atcaactagtacatatcaattgtctgttgtatacattttcatctgtacat
caaaaaacaaaatgatctgccaagaaactatagattctataacctaaaac
agaaagtttattttaccatatcagactaagcaatttgaattgacactcct
gatgaaagtagcccaaaatacaaacaagagaaagtatatattcttgaaat
atttaataaacttaaaaatgaggaaagaaattctagaaacaaacagattc
agaagaataaagtatgtgtgtatgtataaaggatgggctgtatgtaagtc
tcagtatttttcagtacatgcccactactttcctcactaacaaaacgaga
taattccagatctgacagcatatgatgcctcacaataatgagccagtatt
ggccaatgtgtgggagtatcaactgcaacaactcagaaagccgcctctaa
tagatttgtgttctaagagagcag

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtggtacatctacacaatggagtactactcagctattaaaaagaat
gaatttatgaaattcctagccaaatggatggacctggagggcatcatcct
gagtgaggtaacacattcacaaaggaactcacacaatatgtactcactga
taagtggatattagcccaaaacctaggatacccaagatataagatacaat
ttcctaaacacatgaaactcaagaaaaatgaagactgaagtgtggacact
atgcccctccttagaagtgggaacaaaacacccatggaaggagttacaga
gacaaagtttggagctgagatgaaaggatggaccatgtagagtctgccat
atccagggatccaccccataatcagcatccaaacgctgacaccattgcat
acactagtaagattttatcgaaaggacccagatgtagctgtctcttgtga
gactatgcaggggcctagcaaacacagaagtggatgctcacagtcagcta
atggatggatcacagggctcccaatggaggagctagagaaagtacccaag
gagctaaagggatctgcaaccctatataggtggaacaacattatgaacta
accagtaccccggagctcttgactctagctgcatatgtatcaaaagatgg
cctagtcggccatcactggaaagagaggcccattggacatgcaaacttta
tatgccccagtacaggggaacgccagggccaaaaaggggagtgggtgggg
taggggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82677183_82678364
seq2: B6Ng01-333I04.b_50_1223 (reverse)

seq1  CTGCTCTCTTAG-ACACAAATCTATTAGA-GCGGCTTTTCTTGAGTGGTT  48
      |||||||||||| |||||||||||||||| ||||||||   ||||| |||
seq2  CTGCTCTCTTAGAACACAAATCTATTAGAGGCGGCTTT--CTGAGTTGTT  48

seq1  GCAGTTTGGATACTCCCACACATTGGCCAATACTTGGCTCAATTTATTGT  98
      ||||||  ||||||||||||||||||||||||| |||||||  |||||||
seq2  GCAGTT--GATACTCCCACACATTGGCCAATAC-TGGCTCA--TTATTGT  93

seq1  GA-GCATCAATATGCTGTTCAGATTCTTGGAATTATCTCGTTTTGTTAGT  147
      || ||||| |||||||| ||||||   |||||||||||||||||||||||
seq2  GAGGCATC-ATATGCTG-TCAGAT--CTGGAATTATCTCGTTTTGTTAGT  139

seq1  GA-GAAAGTAGTGGGCATGTACTGAAAAATACTGAGACTTACATACAGCC  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTAGTGGGCATGTACTGAAAAATACTGAGACTTACATACAGCC  189

seq1  CATCCTTTATACATACACACATACTTTATTCTTCTGAATCTTGTTTGTTT  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCCTTTATACATACACACATACTTTATTCTTCTGAATC-TGTTTGTTT  238

seq1  CTAGAATTTCTTTCCTCATTTTTAAGTTTATTAAATATTTCAAGAATATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTCTTTCCTCATTTTTAAGTTTATTAAATATTTCAAGAATATA  288

seq1  TACTTTCTCTTGTTTGTATTTTGGGCTACTTTCATCAGGAGTGTCAATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTCTTGTTTGTATTTTGGGCTACTTTCATCAGGAGTGTCAATTC  338

seq1  AAATTGCTTAGTCTGATATGGTAAAATAAACTTTCTGTTTTAGGTTATAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTTAGTCTGATATGGTAAAATAAACTTTCTGTTTTAGGTTATAG  388

seq1  AATCTATAGTTTCTTGGCAGATCATTTTGTTTTTTGATGTACAGATGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAGTTTCTTGGCAGATCATTTTGTTTTTTGATGTACAGATGAAA  438

seq1  ATGTATACAACAGACAATTGATATGTACTAGTTGATTATATTTATTTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACAACAGACAATTGATATGTACTAGTTGATTATATTTATTTTTA  488

seq1  TATTTAAAGTACGACCTCCACTTTCATGCCATGTATGTAGACTTCAGGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGTACGACCTCCACTTTCATGCCATGTATGTAGACTTCAGGAT  538

seq1  CCTCTGACATGACCCTTATAGACAAGTTCTTCAGTTTACTGTGTAGATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACATGACCCTTATAGACAAGTTCTTCAGTTTACTGTGTAGATTT  588

seq1  CATCATCCCACAGTTAATCCAAAATATTTTAACTAATTTCTATTTAACCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCCACAGTTAATCCAAAATATTTTAACTAATTTCTATTTAACCA  638

seq1  CTTACACCATTATTTTTAATTATATGAAGATATCATAACATGAAAATATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCATTATTTTTAATTATATGAAGATATCATAACATGAAAATATA  688

seq1  TCCCACCAATCTTTATTAGCAGTGATTAAGAGATAACTATACTGTTTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAATCTTTATTAGCAGTGATTAAGAGATAACTATACTGTTTATT  738

seq1  AATAAATAAATGTGTAGTGAGATAATATATTCACCCAATGACACAGAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATGTGTAGTGAGATAATATATTCACCCAATGACACAGAGGG  788

seq1  TTGTACTGATTGCTCTCATCTTATAACAAGACTCTAAAAATCAAGCTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGATTGCTCTCATCTTATAACAAGACTCTAAAAATCAAGCTAAT  838

seq1  ATGTTCAGTTTTATTCTTATGTGTTCTTTCTTCCTCCAAATTAAAAATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGTTTTATTCTTATGTGTTCTTTCTTCCTCCAAATTAAAAATTA  888

seq1  TTTTATTGGTCAAAAATATGGCATGGGGAGTACAATTGCTTATGTCTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGTCAAAAATATGGCATGGGGAGTACAATTGCTTATGTCTAAT  938

seq1  CCTGCCAATCGGTATACCATCCCTGAAACCAATATGGTAGAAAGATGGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAATCGGTATACCATCCCTGAAACCAATATGGTAGAAAGATGGAT  988

seq1  CCAACTCATACATATCTTCTGAAATTTCTTACATCATCACATGTGCATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATACATATCTTCTGAAATTTCTTACATCATCACATGTGCATAC  1038

seq1  TGAGCACCCCACATACATATCCAATGAGTAAATAAGCATCCAAATGGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCCACATACATATCCAATGAGTAAATAAGCATCCAAATGGATT  1088

seq1  AATTGTTTTTTTGTTTTCTAAGGCACAAAAAGTGTTCAGGTTCAACTATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTTTTGTTTTCTAAGGCACAAAAAGTGTTCAGGTTCAACTATT  1138

seq1  TTTTGACCTTGCTCCTGATCATATATCTTGGAATTC  1182
      ||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCTTGCTCCTGATCATATATCTTGGAATTC  1174


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