BAC Information

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BAC

Clone NameB6Ng01-333M07
Chromosome5 (Build37)
Map Location 70,045,810 - 70,047,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333M07.bB6Ng01-333M07.g
ACCGA119452GA119453
length1,2701,241
definitionB6Ng01-333M07.b B6Ng01-333M07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatctgcctgcc
tctgctgcctcccaagtgctgggattaaaggcatgtgccaccacccccag
caaggagtgaatttttgctgcttaaatatcacctatcttgttcagaagag
cttaaaagcatcagtcaatgttggtgatttaaggagaatctgctgctgca
gaatcacacgtggcctcttagacagatgaacgaataactagaatctgaca
tagacttttaaccctagctcatacatgaattggtaaaatgacagatatac
ccaaatagatggatgataaaaaaaaagttagactgttgagtgacacttat
tcccccaaagagtgcaaaacttgctgaaaccagagtttcaaaagagcaga
ataatagtgatgaactgcttaggcaaacttgacagaactattctttctca
ttgtcaccactgctacaagcacatctctgaggcaagcaatcttccctata
tgtatagcatttcaaatagttgcatttttttattaaaatgcagctaatca
acaatgctccccactagctatggcttggttatcatgtaaataacatgagg
gagaattattttctttctcatagataacagagggagaaaataaccttaat
tttaagagcaaaacaaaagcttaaggaacaggcacagatctggatctata
attcctagaagcctccttatggttgttcttccttagatctcatcagggag
cagctatgggagaggaagaggccatggtcttctgctcagctggacctgta
ggctttagctgatgacaagttttgctgaagtctttgctgtccttgaaggg
aacacctgctgtgacattgaataaagttgtgccaggcctgtgtggttttc
tgaattccctgaacctgcacagtaacttaagattcactgagaactacagg
ctgagagctaacagtgcccctgtggtcctttgtgccccagcccctccaag
acttgtatagcactttcttacctgcactgaaactcttttttaaaacttac
agctgcttctattccctatctaagctgagaaaagatcaaatcaaactatt
ctacaagcttttctttttttctataagcagcttgaccttcctctcgaaac
taaattaatataggcctgttctacatagcatgcctgggttaaaggactca
ttgaaagatccaggatccgaaggaatacgtaaccttctgctcccgaaagg
aatcttaaaagacataggga

gaattcctaaacctgataaacagcttcggtgaagtagctggatataaaat
taactcaaacaagtcaatggcctttctctacacaaagaataaacaggctg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaatatctcggcgtgactctaactaaggaagtgaaagatctgtatgataa
aaacttcaagtctctgaagaaagaaattaaagaagatctcagaagatgga
aagatctcccatgctcatggattggcaggatcaatattgtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc
aactcaattcttcaatgaattagaaggagcaatttgcaaattcatctgga
ataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacc
tctggtggaatcaccatgccggacctaaagctttactacagagcaattgt
ggtaaaaactgcatggtactggtatagagacagacaagtagaccaatgga
atagaattgaagacccagaaatgaacccacacacctatggtcacttgatc
ttagacaagggagctaaaaccatccagtggaagaaagacagcattttcaa
caaatggtgctggcacaactggttgttatcatgtagaagaatgcgaatcg
atccatacttatctccttgtactaaggtcaaatctaaatggatcaaagaa
cttcacataaaaccagagacactgaaacttatagaggagaaagtggggaa
aagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaa
tggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactc
caaagtttctgcaaggcaaaagacaccgtcaataagacaagagaccacca
acagattgggaaaggatctttacctatcctaaatcagataggggactaat
attccaacatattataaagaactcagaaggtggacttcagaaaatcaaac
accccattaaaattggggctcagaactgaacaaagaattcttcacctgag
aatacgaatggcagagaaagcacctgaaaaattgtttcacattcttattc
attcaggaatgcaaatcgaaacagctagattcacctcaacccagtctgaa
tgtcttagaatcaaattcagggtcacaccaaatgctcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70045810_70047100
seq2: B6Ng01-333M07.b_49_1318 (reverse)

seq1  TCCCTA-GTCTTTTAAGATTCCTTTTCTGGGGGGCCAGGAGGGGTTACAC  49
      |||||| ||||||||||||||||||     |||  ||| |  ||||||  
seq2  TCCCTATGTCTTTTAAGATTCCTTT----CGGGAGCAGAA--GGTTAC--  42

seq1  TTTTTTTCTCTTCTGGATCCTTTGGTTTTCTTTTCTAATGAGCTCCTTTT  99
         | ||| |||| ||||||  |||   |||||   |||||| |||  ||
seq2  --GTATTC-CTTC-GGATCC--TGG--ATCTTT--CAATGAG-TCC--TT  79

seq1  TACGCCAAGCATGCTATG-AG-ACAGG-CTATATTAATTTAGTATTTCGA  146
      ||  ||| |||||||||| || ||||| ||||||||||||||  ||||| 
seq2  TAACCCAGGCATGCTATGTAGAACAGGCCTATATTAATTTAG--TTTCG-  126

seq1  AGAGGAA-GTCAAGCCTGGCTTATAGAAAAAAGAAAAAGCTTGGTAG-AT  194
      ||||||| |||||||   ||||||||||||||  |||||||| |||| ||
seq2  AGAGGAAGGTCAAGC--TGCTTATAGAAAAAAAGAAAAGCTT-GTAGAAT  173

seq1  AGTTTGATTTGATC-TCTCTCAGGCTTAGATAGGGAATAGAAGCAGCTGT  243
      |||||||||||||| | ||||| |||||||||||||||||||||||||||
seq2  AGTTTGATTTGATCTTTTCTCA-GCTTAGATAGGGAATAGAAGCAGCTGT  222

seq1  AAGTTTT-AAAAAGAGTTTCAGTGCAGGTAAGAAAGTGCTATACAAGTCT  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGTTTTAAAAAAGAGTTTCAGTGCAGGTAAGAAAGTGCTATACAAGTC-  271

seq1  TTGGAGGGGCTGGGGCACAAAGGACCACAGGGGCACTGTTAGCTCTCAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGGCTGGGGCACAAAGGACCACAGGGGCACTGTTAGCTCTCAGC  321

seq1  CTGTAGTTCTCAGTGAATCTTAAGTTACTGTGCAGGTTCAGGGAATTCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTCTCAGTGAATCTTAAGTTACTGTGCAGGTTCAGGGAATTCAG  371

seq1  AAAACCACACAGGCCTGGCACAACTTTATTCAATGTCACAGCAGGTGTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACACAGGCCTGGCACAACTTTATTCAATGTCACAGCAGGTGTTC  421

seq1  CCTTCAAGGACAGCAAAGACTTCAGCAAAACTTGTCATCAGCTAAAGCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGGACAGCAAAGACTTCAGCAAAACTTGTCATCAGCTAAAGCCT  471

seq1  ACAGGTCCAGCTGAGCAGAAGACCATGGCCTCTTCCTCTCCCATAGCTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCAGCTGAGCAGAAGACCATGGCCTCTTCCTCTCCCATAGCTGC  521

seq1  TCCCTGATGAGATCTAAGGAAGAACAACCATAAGGAGGCTTCTAGGAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGAGATCTAAGGAAGAACAACCATAAGGAGGCTTCTAGGAATT  571

seq1  ATAGATCCAGATCTGTGCCTGTTCCTTAAGCTTTTGTTTTGCTCTTAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCAGATCTGTGCCTGTTCCTTAAGCTTTTGTTTTGCTCTTAAAA  621

seq1  TTAAGGTTATTTTCTCCCTCTGTTATCTATGAGAAAGAAAATAATTCTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTATTTTCTCCCTCTGTTATCTATGAGAAAGAAAATAATTCTCC  671

seq1  CTCATGTTATTTACATGATAACCAAGCCATAGCTAGTGGGGAGCATTGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTATTTACATGATAACCAAGCCATAGCTAGTGGGGAGCATTGTT  721

seq1  GATTAGCTGCATTTTAATAAAAAAATGCAACTATTTGAAATGCTATACAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTGCATTTTAATAAAAAAATGCAACTATTTGAAATGCTATACAT  771

seq1  ATAGGGAAGATTGCTTGCCTCAGAGATGTGCTTGTAGCAGTGGTGACAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGATTGCTTGCCTCAGAGATGTGCTTGTAGCAGTGGTGACAAT  821

seq1  GAGAAAGAATAGTTCTGTCAAGTTTGCCTAAGCAGTTCATCACTATTATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAATAGTTCTGTCAAGTTTGCCTAAGCAGTTCATCACTATTATT  871

seq1  CTGCTCTTTTGAAACTCTGGTTTCAGCAAGTTTTGCACTCTTTGGGGGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTTGAAACTCTGGTTTCAGCAAGTTTTGCACTCTTTGGGGGAA  921

seq1  TAAGTGTCACTCAACAGTCTAACTTTTTTTTTATCATCCATCTATTTGGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCACTCAACAGTCTAACTTTTTTTTTATCATCCATCTATTTGGG  971

seq1  TATATCTGTCATTTTACCAATTCATGTATGAGCTAGGGTTAAAAGTCTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTCATTTTACCAATTCATGTATGAGCTAGGGTTAAAAGTCTAT  1021

seq1  GTCAGATTCTAGTTATTCGTTCATCTGTCTAAGAGGCCACGTGTGATTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTCTAGTTATTCGTTCATCTGTCTAAGAGGCCACGTGTGATTCT  1071

seq1  GCAGCAGCAGATTCTCCTTAAATCACCAACATTGACTGATGCTTTTAAGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAGATTCTCCTTAAATCACCAACATTGACTGATGCTTTTAAGC  1121

seq1  TCTTCTGAACAAGATAGGTGATATTTAAGCAGCAAAAATTCACTCCTTGC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAACAAGATAGGTGATATTTAAGCAGCAAAAATTCACTCCTTGC  1171

seq1  TGGGGGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGCAGAG  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGCAGAG  1221

seq1  GCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAATTC  1291
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAATTC  1270


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