BAC Information

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BAC

Clone NameB6Ng01-333P05
Chromosome5 (Build37)
Map Location 146,717,467 - 146,718,341
singlet/doubletsinglet
Overlap genenone
Upstream geneSmurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
Downstream geneCyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P05.bB6Ng01-333P05.g
ACCGA119577GA119578
length1,0251,230
definitionB6Ng01-333P05.b B6Ng01-333P05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagcctggtgtacagagtgagttccaggactgacagggc
tacacagagaaatcctgcctcaaaataaaataaacaacaaccgctgtctt
tctggctgtctgggacagtagagaacagcccccattacataaatttgttg
gattttatatggatggatgaaggagatggggttcagaaggtgaaacagct
gggtggttagctggggttttcacacagaggatatgcttaccagtaaggag
tgttcagccagcttctaagggcttctgagaaacactttaggcttttgact
catgagaaaaaccaacacaagtggggtcaagtcatctccataagcattac
cactatgaagcctaatttgggaacctattacatgcatgtctgtgccccat
atgcatgcctagtgcccatgaaagtcagaaccaggcatggaaccccaaat
ctcaacttacagatagctgtgaaccaccatgtaggttcttgcaacttcac
ccgagtcctctgcaatagcagcaactgctcttaacctctgagtcatctct
catgctccttaataaacattgtattagctacttgtctcatctctatgaca
gagtacctgacagaagctacctgaggaagatgtttgcctggctcacagtt
caaataggtatagtccacaatggtggggaagcatggccactagaacaact
tagtccatagtgacaggagtctgtggctggtcacactatggaggtagtga
ggaagcagaaagctagcccagaaacagaactgtctacaacattcaaggcc
agcccttagtgtcctatatctgctataactactccagtgcagtctgcttg
gtaggcctaaagcctgaaagcagtcatgaggcagagtttcacagaaacaa
cctcctggaaaccttggcattcccatagtccgtatacacaaaccctgtcc
ccacgttagtctggtgtatggatccatgtgctctctttcagtatgtttat
tataagtacctttaaggattgattt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgtgttagctaagggtttatctat
cttgttgattttctcaaagaaccaactcctcgtttggttaattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttcctttttttctagagc
ttttagatgtgttgtcaagctgctagtatgtgctgtctcccgttttttct
tgaaggcactcatagctatgagtttccctcttaagaaatgctttcattgg
tgtcccaaaggtttgggtacgtggtggcttcattttcattaaactctaaa
aagtcttaatttctttcttatctccttgaccaagggatcatggagatggt
tgttcagtttccatgtgaatgtggccttcggtattattgtatcggaaatc
aggctatgggccatggatccgtacgggatctggcaaattccaagtctact
gaatcgtcgtaggtctgtattctgtggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146717467_146718341
seq2: B6Ng01-333P05.b_50_924

seq1  GAATTCCAGGCCAGCCTGGTGTACAGAGTGAGTTCCAGGACTGACAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTGTACAGAGTGAGTTCCAGGACTGACAGGGC  50

seq1  TACACAGAGAAATCCTGCCTCAAAATAAAATAAACAACAACCGCTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAATCCTGCCTCAAAATAAAATAAACAACAACCGCTGTCTT  100

seq1  TCTGGCTGTCTGGGACAGTAGAGAACAGCCCCCATTACATAAATTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGTCTGGGACAGTAGAGAACAGCCCCCATTACATAAATTTGTTG  150

seq1  GATTTTATATGGATGGATGAAGGAGATGGGGTTCAGAAGGTGAAACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATATGGATGGATGAAGGAGATGGGGTTCAGAAGGTGAAACAGCT  200

seq1  GGGTGGTTAGCTGGGGTTTTCACACAGAGGATATGCTTACCAGTAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTAGCTGGGGTTTTCACACAGAGGATATGCTTACCAGTAAGGAG  250

seq1  TGTTCAGCCAGCTTCTAAGGGCTTCTGAGAAACACTTTAGGCTTTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCCAGCTTCTAAGGGCTTCTGAGAAACACTTTAGGCTTTTGACT  300

seq1  CATGAGAAAAACCAACACAAGTGGGGTCAAGTCATCTCCATAAGCATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAAACCAACACAAGTGGGGTCAAGTCATCTCCATAAGCATTAC  350

seq1  CACTATGAAGCCTAATTTGGGAACCTATTACATGCATGTCTGTGCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGAAGCCTAATTTGGGAACCTATTACATGCATGTCTGTGCCCCAT  400

seq1  ATGCATGCCTAGTGCCCATGAAAGTCAGAACCAGGCATGGAACCCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCCTAGTGCCCATGAAAGTCAGAACCAGGCATGGAACCCCAAAT  450

seq1  CTCAACTTACAGATAGCTGTGAACCACCATGTAGGTTCTTGCAACTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTACAGATAGCTGTGAACCACCATGTAGGTTCTTGCAACTTCAC  500

seq1  CCGAGTCCTCTGCAATAGCAGCAACTGCTCTTAACCTCTGAGTCATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCCTCTGCAATAGCAGCAACTGCTCTTAACCTCTGAGTCATCTCT  550

seq1  CATGCTCCTTAATAAACATTGTATTAGCTACTTGTCTCATCTCTATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCTTAATAAACATTGTATTAGCTACTTGTCTCATCTCTATGACA  600

seq1  GAGTACCTGACAGAAGCTACCTGAGGAAGATGTTTGCCTGGCTCACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCTGACAGAAGCTACCTGAGGAAGATGTTTGCCTGGCTCACAGTT  650

seq1  CAAATAGGTATAGTCCACAATGGTGGGGAAGCATGGCCACTAGAACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGGTATAGTCCACAATGGTGGGGAAGCATGGCCACTAGAACAACT  700

seq1  TAGTCCATAGTGACAGGAGTCTGTGGCTGGTCACACTATGGAGGTAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATAGTGACAGGAGTCTGTGGCTGGTCACACTATGGAGGTAGTGA  750

seq1  GGAAGCAGAAAGCTAGCCCAGAAACAGAACTGTCTACAACATTCAAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAAAGCTAGCCCAGAAACAGAACTGTCTACAACATTCAAGGCC  800

seq1  AGCCCTTAGTGTCCTATATCTGCTATAACTACTCCAGTGCAGTCTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTAGTGTCCTATATCTGCTATAACTACTCCAGTGCAGTCTGCTTG  850

seq1  GTAGGCCTAAAGCCTGAAAGCAGTC  875
      |||||||||||||||||||||||||
seq2  GTAGGCCTAAAGCCTGAAAGCAGTC  875