BAC Information

Click to search

BAC

Clone NameB6Ng01-334E06
Chromosome5 (Build37)
Map Location 17,270,550 - 17,414,689
singlet/doubletdoublet
Overlap geneCd36
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
Downstream geneGnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334E06.bB6Ng01-334E06.g
ACCGA119811GA119812
length1,090746
definitionB6Ng01-334E06.b B6Ng01-334E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,413,585 - 17,414,689)(17,270,550 - 17,271,289)
sequence
gaattccctgttcggataaacctgaacaatttactggacagctcagtatt
aaattgtggccatgaagatgttttctcatttgcttatgcttgtttatata
tcaaatatcacatctgaatttttgtttgctttactgaagagtggtagagt
taattttatgtttcataagctataggttttaaagtcttattttgatttta
tttatcagtctttaatacaacacatactcagaggatggcatggggcttaa
gtatttaaaacttgttcaaatgtagataattctctttcctagtacacaat
cttattctttcttcttggaactctaagtcttgtacacagtaaagccatta
attcctagtgttatgtatgttacataatgggctattttctcttcagttgt
gttcttggaatctaagttcagacagaaaaaataaataaactcttataaca
gtttgaattgtttagactctttaatttttgtttcattttttaggactgac
tgaatctttcattcttgacattctcgagaatagtatactcattgatgtag
atggatatgaagtttgaaaatattagactgttaatatttgcagaataatt
ctacatttcaaagttaaaatgtagtttaagcttcctggtcttatattagc
aatgatgaagagagaaagcttcccctgtgttctggttagtataactagaa
aaaaatccatattactagtatcatttaatgatttttaaattctaggtatt
gtatcttttgataaattttatgtacttgtttaaattaaattgatatttta
aaggtttaaaattagattgcaaaactaaattaaaacttgaaaaagcacaa
aactcgtaaaagaaaccatataacctttagttcatgttttcctaccctaa
ttcctgtcatacctcatttagctgttttctgttacaatatcaaaatatcc
ctttcaccaactggcataatgtgtagctaaatgtgattctagccatgtac
tctcagatcaattctgatcccatttcagctactagtctgtaataaagtct
gctcatttttcacctattaagatgagaggagacccttcaa

gaattcctcatgtcacctactcagtcctctgctttgatttacttcttgct
gcgatgccaggaagagtgcctttcagttatcattttgtgcttactctcct
gggctcttgtgtgtgcttctcaatgcgttggataaactgaaccttatatc
agagtacaaaacaggcaacattttcatcttctttgaactttgaggagctc
ttgtcccatcctcaggggtgtaagatatttgatgttcatatctgtttgta
gtgccaagaaagtgttagtgaacccctcccaaaacagacaggagctgatc
caacgcaaatcacaacagggcctttattcaagctagcttgggcccctcgg
cccagtgcctacctgcaggattgttttggtggagatgtgtgcccacatca
attggggtaaggctttatagaaagcaacaagtggggagtgagcatttcta
gcctggcaagcatctaattggagagctactgtggcctttagcataattgg
ctggtgctgggagtcaaaccacaaacttaacttcttttccctctgcattg
gtagtagtcagacaagggcaggcttggtgggaatttactgggaaacactg
gattgttgggggaaattgactctggtctgttggggttagtttagaaagtg
gagctaggcttgggttttgttgtggggggaggaggttagtaactttggaa
actaatgttaggtaccggcctgttaatttacccgagttcaggtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17413585_17414689
seq2: B6Ng01-334E06.b_46_1135 (reverse)

seq1  TTGAAGTGTCTCTTCTCATCTTTAATAGTTGTGAAAATAGAAGCAGACTA  50
      |||||| ||||| ||||||| |||||||  ||||||| |  |||||||| 
seq2  TTGAAGGGTCTCCTCTCATC-TTAATAG--GTGAAAA-ATGAGCAGACTT  46

seq1  TATTACAGACTAGTTAAGCTGATAAATGGAGAATTCAGGATTTGATCTGA  100
      ||||||||||||||  |||||  |||||| ||  ||| || |||||||||
seq2  TATTACAGACTAGT--AGCTG--AAATGG-GA--TCA-GAATTGATCTGA  88

seq1  GAGTACATTGCTAGAATCACATTTTAGCTACCACATTATGCCAGTTTGTG  150
      |||||||| |||||||||||| |||||||| ||||||||||||||| |||
seq2  GAGTACATGGCTAGAATCACA-TTTAGCTA-CACATTATGCCAGTTGGTG  136

seq1  AAAGGGATTATTTTGATATTTGTAACAGAAAACAGCTAAAAGAGGTTATG  200
      ||||||| |||||||||| ||||||||||||||||||||| |||| ||||
seq2  AAAGGGA-TATTTTGATA-TTGTAACAGAAAACAGCTAAATGAGG-TATG  183

seq1  ACAGGAATTAGGGTAGGAAAACATGAACTAAAGGTTATATGGTTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTAGGGTAGGAAAACATGAACTAAAGGTTATATGGTTTCTTTT  233

seq1  ACGAGTTTTGTGCTTTTTCAAGTTTTTAATTTAGTTTTTGCAATCTAATT  300
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ACGAGTTTTGTGCTTTTTCAAG-TTTTAATTTAG-TTTTGCAATCTAATT  281

seq1  TTAAACCTTTAAAATATCAATTTAATTTAAACAAGTACATAAAATTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTTTAAAATATCAATTTAATTTAAACAAGTACATAAAATTTATC  331

seq1  AAAAGATACAATACCTAGAATTTAAAAATCATTAAATGATACTAGTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATACAATACCTAGAATTTAAAAATCATTAAATGATACTAGTAATA  381

seq1  TGGATTTTTTTCTAGTTATACTAACCAGAACACAGGGGAAGCTTTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTCTAGTTATACTAACCAGAACACAGGGGAAGCTTTCTCTC  431

seq1  TTCATCATTGCTAATATAAGACCAGGAAGCTTAAACTACATTTTAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTGCTAATATAAGACCAGGAAGCTTAAACTACATTTTAACTTT  481

seq1  GAAATGTAGAATTATTCTGCAAATATTAACAGTCTAATATTTTCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGAATTATTCTGCAAATATTAACAGTCTAATATTTTCAAACTT  531

seq1  CATATCCATCTATATCAATGAGTATACTATTCACGAGAATGTCAAGAATG  600
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CATATCCATCTACATCAATGAGTATACTATTCTCGAGAATGTCAAGAATG  581

seq1  AAATAT----TCAGTCCTAAAAAATGAAACAAAAATTAAAGAGTCTAAAC  646
      ||| ||    ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCAGTCAGTCCTAAAAAATGAAACAAAAATTAAAGAGTCTAAAC  631

seq1  AATTCAAACTGTTATAAGAGTTTATTTATTTTTTCTGTCTGAACTTAGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACTGTTATAAGAGTTTATTTATTTTTTCTGTCTGAACTTAGAT  681

seq1  TCCAAGAACACAACTGAAGAGAAAATAGCCCATTATGTAACATACATAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAACACAACTGAAGAGAAAATAGCCCATTATGTAACATACATAAC  731

seq1  ACTAGGAATTAATGGCTTTACTGTGTACAAGACTTAGAGTTCCAAGAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAATTAATGGCTTTACTGTGTACAAGACTTAGAGTTCCAAGAAGA  781

seq1  AAGAATAAGATTGTGTACTAGGAAAGAGAATTATCTACATTTGAACAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGATTGTGTACTAGGAAAGAGAATTATCTACATTTGAACAAGT  831

seq1  TTTAAATACTTAAGCCCCATGCCATCCTCTGAGTATGTGTTGTATTAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACTTAAGCCCCATGCCATCCTCTGAGTATGTGTTGTATTAAAG  881

seq1  ACTGATAAATAAAATCAAAATAAGACTTTAAAACCTATAGCTTATGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAATAAAATCAAAATAAGACTTTAAAACCTATAGCTTATGAAAC  931

seq1  ATAAAATTAACTCTACCACTCTTCAGTAAAGCAAACAAAAATTCAGATGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAACTCTACCACTCTTCAGTAAAGCAAACAAAAATTCAGATGT  981

seq1  GATATTTGATATATAAACAAGCATAAGCAAATGAGAAAACATCTTCATGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGATATATAAACAAGCATAAGCAAATGAGAAAACATCTTCATGG  1031

seq1  CCACAATTTAATACTGAGCTGTCCAGTAAATTGTTCAGGTTTATCCGAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTAATACTGAGCTGTCCAGTAAATTGTTCAGGTTTATCCGAAC  1081

seq1  AGGGAATTC  1105
      |||||||||
seq2  AGGGAATTC  1090


seq1: chr5_17270550_17271289
seq2: B6Ng01-334E06.g_66_807

seq1  GAATTCCTCATGTCACCTACTCAGTCCTCTGCTTTGATTTACTTCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATGTCACCTACTCAGTCCTCTGCTTTGATTTACTTCTTGCT  50

seq1  GCGATGCCAGGAAGAGTGCCTTTCAGTTATCATTTTGTGCTTACTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGCCAGGAAGAGTGCCTTTCAGTTATCATTTTGTGCTTACTCTCCT  100

seq1  GGGCTCTTGTGTGTGCTTCTCAATGCGTTGGATAAACTGAACCTTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTGTGTGTGCTTCTCAATGCGTTGGATAAACTGAACCTTATATC  150

seq1  AGAGTACAAAACAGGCAACATTTTCATCTTCTTTGAACTTTGAGGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACAAAACAGGCAACATTTTCATCTTCTTTGAACTTTGAGGAGCTC  200

seq1  TTGTCCCATCCTCAGGGGTGTAAGATATTTGATGTTCATATCTGTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCATCCTCAGGGGTGTAAGATATTTGATGTTCATATCTGTTTGTA  250

seq1  GTGCCAAGAAAGTGTTAGTGAACCCCTCCCAAAACAGACAGGAGCTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGAAAGTGTTAGTGAACCCCTCCCAAAACAGACAGGAGCTGATC  300

seq1  CAACGCAAATCACAACAGGGCCTTTATTCAAGCTAGCTTGGGCCCCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCAAATCACAACAGGGCCTTTATTCAAGCTAGCTTGGGCCCCTCGG  350

seq1  CCCAGTGCCTACCTGCAGGATTGTTTTGGTGGAGATGTGTGCCCACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCTACCTGCAGGATTGTTTTGGTGGAGATGTGTGCCCACATCA  400

seq1  ATTGGGGTAAGGCTTTATAGAAAGCAACAAGTGGGGAGTGAGCATTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTAAGGCTTTATAGAAAGCAACAAGTGGGGAGTGAGCATTTCTA  450

seq1  GCCTGGCAAGCATCTAATTGGAGAGCTACTGTGGCCTTTAGCATAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCAAGCATCTAATTGGAGAGCTACTGTGGCCTTTAGCATAATTGG  500

seq1  CTGGTGCTGGGAGTCAAACCACAAACTTAACTTCTTTTCCCTCTGCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTGGGAGTCAAACCACAAACTTAACTTCTTTTCCCTCTGCATTG  550

seq1  GTAGTAGTCAGACAAGGGCAGGCTTGGTGGGAATTTACTGGGAAACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTCAGACAAGGGCAGGCTTGGTGGGAATTTACTGGGAAACACTG  600

seq1  GATTGTTGGGGGAAATTGACTCTGGTCTGTTGGGGTTAGTTTAGAAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGGGGGAAATTGACTCTGGTCTGTTGGGGTTAGTTTAGAAAGTG  650

seq1  GAGCTAGGCTTGGGTTTTGTTGTGGGGGGAGGAGG-TAGTAAC-TTGGAA  698
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  GAGCTAGGCTTGGGTTTTGTTGTGGGGGGAGGAGGTTAGTAACTTTGGAA  700

seq1  ACTAATGTTAGGTACCGGCCTGTTAATTTACCCGAGTTCAAG  740
      |||||||||||||||||||||||||||||||||||||||| |
seq2  ACTAATGTTAGGTACCGGCCTGTTAATTTACCCGAGTTCAGG  742


| Home | SequenceCutter | Blast | Download |