BAC Information

Click to search

BAC

Clone NameB6Ng01-334P16
Chromosome5 (Build37)
Map Location 12,530,007 - 12,666,809
singlet/doubletdoublet
Overlap geneSema3d
Upstream geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, LOC668015, LOC100042917
Downstream geneLOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334P16.bB6Ng01-334P16.g
ACCGA120349GA120350
length1,1681,109
definitionB6Ng01-334P16.b B6Ng01-334P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,665,649 - 12,666,809)(12,530,007 - 12,531,136)
sequence
gaattcttaattctcaatttgtttgattttattgtctcattgctacatga
tcattagagattttgggggtggtttgcatgatcattgggagtacagtaaa
taaatatacttacgtgttttcttacctgtccttgtaaaatatttggaaca
gagagatttaacagtgtgtatgtttattttcgtaattttccagcagtatg
gtgatatattagattcatgagctacatagcaatatttcagttagcaatga
cctcacataggttgatggttgtgaaataaccctaggtgtgtggcagcttt
gaatatgcttccttactgatgaccatgctgtggggccctctcaggtgata
cacttctcattagtacacatcagcctaagtgaattggaactcagctgcaa
tatcagggactggagaaccggacggatgaacctgctgtaaacataagata
taagtgagtgtgtttccttgtaaataaagtgtttttatgtcaggtaaaca
cagagtcacctgattgtgtaaagcctatctctgagtaaatatgaggtcca
aacaatttatgattaagtactattatttctgagtttcaaacttcccataa
tatttcacagtaacttctttaaaaagtaatggattgagtgtgattattat
tcccattcatgaaaaataactctaatataaaaagctttttccatcttata
tttcttttcatcttttcttctaaatatcaacaatatggacatattggttc
caagaaaagctgactttctatttccaacatgcatccaaacgatacataga
gaatggtaattgtgtttagaaatagttagaaaatgcagacagtgactggc
tggtagtgatttaatgatttctaagatgaaagtgaaccaaagagctgaat
aataggaattactgagtggaattcaataatagtttgcctgatcttgctca
gatgttctgtcttatgtttcacgacattaaacaacccttagcttcttgca
ctgtaaaaccatgggtccttgggttaccaaaatatttttttcaatttctc
catgtctctactgttgaataattttaatatcataatgcctggagcatctt
aatgatataacctagagagaactttctttataattaaaccttggaatctg
gaaatacatcatcactaa
gaattcaatttggatagccctgacacataacttgcctaggggtctcatta
atagctgtttgcttcaattccacttgcattgtctgttttgatatatggcc
ctacttggacaatcactgcctttgaagatttgtatttttagcctgatgac
actttctgtatttattgatctcctttgagctgtggttttctgcttacttt
tagtgtgtcacttgcaacctaagtgagagatttagtggccccagttacag
atgtgctttgcctgttcttccatctgttttcctgtcagaaaaattcctgg
gaagggatgtataatgtttgctgtagcttttaaaacaaaattagtgagcc
ttgatactacccgcaagcatgcctatgttcacccaacttaaactgctagt
gcttagacactaaattctttagcgtaatgcattatccatgtcctgcattt
ctaatgatgtgagttttttaaatagttagagaaacaggttttctctattc
tcattcatgttctccaacagaaaatcacaagcagtttcctgtaaatatta
cttaaaaaaaataaaaaaaaccaaataaaaaacaaaaacggtaagaaaaa
aaaacttttctttgaaactcactatttctttttttatatccagtatagta
taaaactaggcatggtggtacatgattggaacccaaactcttaggggaca
gagtcaggaagatcagaagtatagttatcctctgctacatagtaaattcc
aggtcagcctgaaatacgtgtgactctgtcttttaaaaaaattgattagt
attaatggactaactttgtgagtatacagatttttcaaatccaacgagct
tagagaatagtacactccaagaaatcacgacaataatacagttatcaatt
caccattgattaaaattgcaatatttgatcagacttgttcatgtttagac
ttgtgcaaggaaagggtatctatgagctttattgcaacacgttttctgtg
ctgtctattcagtgctctcatcacagtatttattctgatcgtactgaaat
aacaaaactcatctcgtttgactatgaaaaaatacatattttcaataaaa
ttttattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12665649_12666809
seq2: B6Ng01-334P16.b_49_1216 (reverse)

seq1  TTAGTGATGAATGTATTT-CAGAATCCA--GTGTTAATATAAAGAAGGTT  47
      ||||||||| |||||||| |||| ||||  || | | ||||||||| |||
seq2  TTAGTGATG-ATGTATTTCCAGATTCCAAGGTTTAATTATAAAGAAAGTT  49

seq1  CTCTCTA-GTTATATCATTAAGATGCTC--AGCATTATGATA-TAAAATA  93
      ||||||| ||||||||||||||||||||   ||||||||||| |||||| 
seq2  CTCTCTAGGTTATATCATTAAGATGCTCCAGGCATTATGATATTAAAATT  99

seq1  ATTCAACAGTAGAGACATGGAGAAATTGAAAAAAATTATTTTGGTAACCA  143
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  ATTCAACAGTAGAGACATGGAGAAATTGAAAAAAA-TATTTTGGTAACCC  148

seq1  AAGGA-CCATGGTTTTACAGTGC-AGAAGCTAAGGGTTGTTTAATGTCGT  191
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGACCCATGGTTTTACAGTGCAAGAAGCTAAGGGTTGTTTAATGTCGT  198

seq1  GAAACATAAGACAGAACATCTGAGCAAGATCAGGCAAACTATTATTGAAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATAAGACAGAACATCTGAGCAAGATCAGGCAAACTATTATTGAAT  248

seq1  TCCACTCAGTAATTCCTATTATTCAGCTCTTTGGTTCACTTTCATCTTAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCAGTAATTCCTATTATTCAGCTCTTTGGTTCACTTTCATCTTAG  298

seq1  AAATCATTAAATCACTACCAGCCAGTCACTGTCTGCATTTTCTAACTATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTAAATCACTACCAGCCAGTCACTGTCTGCATTTTCTAACTATT  348

seq1  TCTAAACACAATTACCATTCTCTATGTATCGTTTGGATGCATGTTGGAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACAATTACCATTCTCTATGTATCGTTTGGATGCATGTTGGAAA  398

seq1  TAGAAAGTCAGCTTTTCTTGGAACCAATATGTCCATATTGTTGATATTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTCAGCTTTTCTTGGAACCAATATGTCCATATTGTTGATATTTA  448

seq1  GAAGAAAAGATGAAAAGAAATATAAGATGGAAAAAGCTTTTTATATTAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGATGAAAAGAAATATAAGATGGAAAAAGCTTTTTATATTAGA  498

seq1  GTTATTTTTCATGAATGGGAATAATAATCACACTCAATCCATTACTTTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTCATGAATGGGAATAATAATCACACTCAATCCATTACTTTTT  548

seq1  AAAGAAGTTACTGTGAAATATTATGGGAAGTTTGAAACTCAGAAATAATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTACTGTGAAATATTATGGGAAGTTTGAAACTCAGAAATAATA  598

seq1  GTACTTAATCATAAATTGTTTGGACCTCATATTTACTCAGAGATAGGCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAATCATAAATTGTTTGGACCTCATATTTACTCAGAGATAGGCTT  648

seq1  TACACAATCAGGTGACTCTGTGTTTACCTGACATAAAAACACTTTATTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATCAGGTGACTCTGTGTTTACCTGACATAAAAACACTTTATTTA  698

seq1  CAAGGAAACACACTCACTTATATCTTATGTTTACAGCAGGTTCATCCGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACACACTCACTTATATCTTATGTTTACAGCAGGTTCATCCGTC  748

seq1  CGGTTCTCCAGTCCCTGATATTGCAGCTGAGTTCCAATTCACTTAGGCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCTCCAGTCCCTGATATTGCAGCTGAGTTCCAATTCACTTAGGCTG  798

seq1  ATGTGTACTAATGAGAAGTGTATCACCTGAGAGGGCCCCACAGCATGGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACTAATGAGAAGTGTATCACCTGAGAGGGCCCCACAGCATGGTC  848

seq1  ATCAGTAAGGAAGCATATTCAAAGCTGCCACACACCTAGGGTTATTTCAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAGGAAGCATATTCAAAGCTGCCACACACCTAGGGTTATTTCAC  898

seq1  AACCATCAACCTATGTGAGGTCATTGCTAACTGAAATATTGCTATGTAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAACCTATGTGAGGTCATTGCTAACTGAAATATTGCTATGTAGC  948

seq1  TCATGAATCTAATATATCACCATACTGCTGGAAAATTACGAAAATAAACA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATCTAATATATCACCATACTGCTGGAAAATTACGAAAATAAACA  998

seq1  TACACACTGTTAAATCTCTCTGTTCCAAATATTTTACAAGGACAGGTAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTGTTAAATCTCTCTGTTCCAAATATTTTACAAGGACAGGTAAG  1048

seq1  AAAACACGTAAGTATATTTATTTACTGTACTCCCAATGATCATGCAAACC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACGTAAGTATATTTATTTACTGTACTCCCAATGATCATGCAAACC  1098

seq1  ACCCCCAAAATCTCTAATGATCATGTAGCAATGAGACAATAAAATCAAAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAAATCTCTAATGATCATGTAGCAATGAGACAATAAAATCAAAC  1148

seq1  AAATTGAGAATTAAGAATTC  1161
      ||||||||||||||||||||
seq2  AAATTGAGAATTAAGAATTC  1168

seq1: chr5_12530007_12531136
seq2: B6Ng01-334P16.g_65_1173

seq1  GAATTCAATTTGGATAGCCCTGACACATAACTTGCCTAGGGGTCTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGGATAGCCCTGACACATAACTTGCCTAGGGGTCTCATTA  50

seq1  ATAGCTGTTTGCTTCAATTCCACTTGCATTGTCTGTTTTGATATATGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTTTGCTTCAATTCCACTTGCATTGTCTGTTTTGATATATGGCC  100

seq1  CTACTTGGACAATCACTGCCTTTGAAGATTTGTATTTTTAGCCTGATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGACAATCACTGCCTTTGAAGATTTGTATTTTTAGCCTGATGAC  150

seq1  ACTTTCTGTATTTATTGATCTCCTTTGAGCTGTGGTTTTCTGCTTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTATTTATTGATCTCCTTTGAGCTGTGGTTTTCTGCTTACTTT  200

seq1  TAGTGTGTCACTTGCAACCTAAGTGAGAGATTTAGTGGCCCCAGTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTCACTTGCAACCTAAGTGAGAGATTTAGTGGCCCCAGTTACAG  250

seq1  ATGTGCTTTGCCTGTTCTTCCATCTGTTTTCCTGTCAGAAAAATTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTTGCCTGTTCTTCCATCTGTTTTCCTGTCAGAAAAATTCCTGG  300

seq1  GAAGGGATGTATAATGTTTGCTGTAGCTTTTAAAACAAAATTAGTGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATGTATAATGTTTGCTGTAGCTTTTAAAACAAAATTAGTGAGCC  350

seq1  TTGATACTACCCGCAAGCATGCCTATGTTCACCCAACTTAAACTGCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTACCCGCAAGCATGCCTATGTTCACCCAACTTAAACTGCTAGT  400

seq1  GCTTAGACACTAAATTCTTTAGCGTAATGCATTATCCATGTCCTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGACACTAAATTCTTTAGCGTAATGCATTATCCATGTCCTGCATTT  450

seq1  CTAATGATGTGAGTTTTTTAAATAGTTAGAGAAACAGGTTTTCTCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATGTGAGTTTTTTAAATAGTTAGAGAAACAGGTTTTCTCTATTC  500

seq1  TCATTCATGTTCTCCAACAGAAAATCACAAGCAGTTTCCTGTAAATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGTTCTCCAACAGAAAATCACAAGCAGTTTCCTGTAAATATTA  550

seq1  CTTAAAAAAAATAAAAAAAACCAAATAAAAAACAAAAACGGTAAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAATAAAAAAAACCAAATAAAAAACAAAAACGGTAAGAAAAA  600

seq1  AAAACTTTTCTTTGAAACTCACTATTTCTTTTTTTATATCCAGTATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTCTTTGAAACTCACTATTTCTTTTTTTATATCCAGTATAGTA  650

seq1  TAAAACTAGGCATGGTGGTACATGATTGGAACCCAAACTCTTAGGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAGGCATGGTGGTACATGATTGGAACCCAAACTCTTAGGGGACA  700

seq1  GAGTCAGGAAGATCAGAAGTATAGTTATCCTCTGCTACATAGTAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAAGATCAGAAGTATAGTTATCCTCTGCTACATAGTAAATTCC  750

seq1  AGGTCAGCCTGAAATACGTGTGACTCTGTCTTTTAAAAAAATTGATTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCCTGAAATACGTGTGACTCTGTCTTTTAAAAAAATTGATTAGT  800

seq1  ATTAATGGACTAACTTTGTGAGTATACAGATTTTTCAAATCCAACGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGACTAACTTTGTGAGTATACAGATTTTTCAAATCCAACGAGCT  850

seq1  TAGAGAATAGTACACTCCAAGAAATCACGACAATAATACAGTTATCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATAGTACACTCCAAGAAATCACGACAATAATACAGTTATCAATT  900

seq1  CACCATTGATTAAAATTGCAATATTTGATCAGACTTGTTCATGTTTAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGATTAAAATTGCAATATTTGATCAGACTTGTTCATGTTTAGAC  950

seq1  TTGTGCAAAGGAAAGGGGTAATCTATGAAGCTTTTAATTGCAAACACGTT  1000
      |||||| ||||||||||   ||||||| ||||||  ||||| ||||||||
seq2  TTGTGC-AAGGAAAGGG--TATCTATG-AGCTTT--ATTGC-AACACGTT  993

seq1  TTCTGTGCTGTCTATTCCAGTGGCTCTCATCAACAGTATTTATTCTTGTA  1050
      |||||||||||||||| |||| ||||||||| ||||||||||||||   |
seq2  TTCTGTGCTGTCTATT-CAGT-GCTCTCATC-ACAGTATTTATTCT--GA  1038

seq1  TCGTACTTGAAATAAACAAAACTCATCTCGTTTTGAACTATGATAAAATA  1100
      |||||| |||||| |||||||||||||||||||   ||||||| ||||||
seq2  TCGTAC-TGAAAT-AACAAAACTCATCTCGTTT--GACTATGAAAAAATA  1084

seq1  CATATTTTTCAAAATTAAAAATATTATTCT  1130
      |||| |||||||     ||||| |||||||
seq2  CATA-TTTTCAA----TAAAATTTTATTCT  1109