BAC Information

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BAC

Clone NameB6Ng01-335D18
Chromosome5 (Build37)
Map Location 71,882,974 - 71,998,091
singlet/doubletdoublet
Overlap gene4930503B16Rik, Gabra4
Upstream geneGabrg1, Gabra2, LOC635092
Downstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335D18.bB6Ng01-335D18.g
ACCGA120528GA120529
length823908
definitionB6Ng01-335D18.b B6Ng01-335D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,997,272 - 71,998,091)(71,882,974 - 71,883,879)
sequence
gaattccttagaatgtttaatatttcatctgtattacttaaactcttttc
cccactatttctttatgagttacgttcatctttcagaattccataaatca
ttcgatattatatgtctgtaatgagtaatattcattgtagcacggcaaat
tcattttgtctaaaacattactgcaaatgtgtataaggaaatatatcaat
acatcattgagtttgaatatgtgtaggcacagtctaggcacatttttaat
tgatcaaaatagttttctacatgtttctcagagctggagcatattagaaa
aaaatctcaagtagcatgtaatgaatatgtgactgtaattgttattttat
agtagagttaatggcaaaaattacagttaatagaggattccagaaaccca
tgagacaatttagaataattaagtttcacacctaattttctgattggtat
tcagtaattttgtaactattaagactgactagtcagtcatacttttagaa
atcatagctgtttctgagtttcttctaagagaaggatacacacacacaca
cacacacacacacacacacacttatggaagataaaccaatagatagttac
actctgtctcacatacagaggaagggatagtgggaggggagaaaagggga
gagactctcgaatgctctgcagtgcttagtgattatataaaactctagta
taattgtttttcttattcaagacagaaaaattcaggtgtttatccataca
cctcttacatgactatttacctcgtctatgacagatctctcgactgaatt
tttggccatttcgtcaaggcaag
gaattctggcattcagatatgtagggacaaatatcccatataaacatagg
aaaagaagagaaaaaaatgaacagtgctaggtgttttagtttgtgtaata
atacattgatgaatcttagaaataacacagaaaatgaatctggaggtcag
atgatagactaaggtgttgaacttcattatacaacatctgagtaaaagta
attgtatttggcaattaagtttagaatattaatcagctgtatggggaagg
ggttgaagaaatgggtgaaaaggggagattgcttagaaaattatgacatg
ggccctagagtagaacctgctattaacttgctaaatggccacgctatcaa
attgtcttctgaatatttacgtttatacccacacttggggctacttttaa
ccttggtcagagtatgttgttttggagtaggtagcagtcaatgaacggac
tggttaaagcactgaaaaatgagaaagtgagtcttcaagcctaagcagga
catctacatcaaacctggctccaccaaggtcagaaagcaaagagcataga
agagagtacagaaagaatgcaagagagctggcaggtggtagcaaatgctg
tgacttgctgtcttctggacatggcagggctctgacactcatgaacttat
acagcagctgggattgcctgtgttaattggtttggcatttcttttcatta
taaaaaattgggcaatgtgtgtgaaaacctagtttagaaagcatggaata
tgaattattctcatataaaaagtctcaataatagtgaagtaaaccatgtg
tacatcacaatgtcctatactttccccaccatgtttgataatgcactata
gtgatgagatgatattaaatatttaccttattctccacttacgcttaaaa
atagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71997272_71998091
seq2: B6Ng01-335D18.b_43_865 (reverse)

seq1  CTTGCC-TCAC-AAATGGCCAAAAATCCACTCCGTAGATTTGTCCTAAAT  48
      |||||| | || |||||||||||||| || ||   |||| |||| || | 
seq2  CTTGCCTTGACGAAATGGCCAAAAATTCAGTCGAGAGATCTGTCATAGAC  50

seq1  GAGGAAAATAGTCTAATAAAATTTCTGAGAATAAAAACCTGATGTTTTCT  98
      |||| ||||||||   ||| |  | |  | ||||| ||||||  ||||||
seq2  GAGGTAAATAGTCATGTAAGAGGTGTATGGATAAACACCTGAATTTTTCT  100

seq1  GTCTTAAATTA-TAAAACAATT-TGCTAGTGTTTTATATAATCACTATAG  146
      ||||| ||| |  ||||||||| | |||| ||||||||||||||||| ||
seq2  GTCTTGAATAAGAAAAACAATTATACTAGAGTTTTATATAATCACTA-AG  149

seq1  CACAGAAAAGCATTCGAGAGTCTCTCCCCTTTTCTCCCCTCCCACTATCC  196
      ||| | | ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGAGCATTCGAGAGTCTCTCCCCTTTTCTCCCCTCCCACTATCC  199

seq1  CTTCCTCTGTATGTGAGACAGAGTGTAACTATCTATTGGTTTATCTTCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGTATGTGAGACAGAGTGTAACTATCTATTGGTTTATCTTCCA  249

seq1  TAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCTTCTCTTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCTTCTCTTAG  299

seq1  AAGAAACTCAGAAACAGCTATGATTTCTAAAAGTATGACTGACTAGTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCAGAAACAGCTATGATTTCTAAAAGTATGACTGACTAGTCAG  349

seq1  TCTTAATAGTTACAAAATTACTGAATACCAATCAGAAAATTAGGTGTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAGTTACAAAATTACTGAATACCAATCAGAAAATTAGGTGTGAA  399

seq1  ACTTAATTATTCTAAATTGTCTCATGGGTTTCTGGAATCCTCTATTAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTATTCTAAATTGTCTCATGGGTTTCTGGAATCCTCTATTAACT  449

seq1  GTAATTTTTGCCATTAACTCTACTATAAAATAACAATTACAGTCACATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTGCCATTAACTCTACTATAAAATAACAATTACAGTCACATAT  499

seq1  TCATTACATGCTACTTGAGATTTTTTTCTAATATGCTCCAGCTCTGAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACATGCTACTTGAGATTTTTTTCTAATATGCTCCAGCTCTGAGAA  549

seq1  ACATGTAGAAAACTATTTTGATCAATTAAAAATGTGCCTAGACTGTGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGAAAACTATTTTGATCAATTAAAAATGTGCCTAGACTGTGCCT  599

seq1  ACACATATTCAAACTCAATGATGTATTGATATATTTCCTTATACACATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCAAACTCAATGATGTATTGATATATTTCCTTATACACATTT  649

seq1  GCAGTAATGTTTTAGACAAAATGAATTTGCCGTGCTACAATGAATATTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATGTTTTAGACAAAATGAATTTGCCGTGCTACAATGAATATTAC  699

seq1  TCATTACAGACATATAATATCGAATGATTTATGGAATTCTGAAAGATGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAGACATATAATATCGAATGATTTATGGAATTCTGAAAGATGAA  749

seq1  CGTAACTCATAAAGAAATAGTGGGGAAAAGAGTTTAAGTAATACAGATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTCATAAAGAAATAGTGGGGAAAAGAGTTTAAGTAATACAGATGA  799

seq1  AATATTAAACATTCTAAGGAATTC  820
      ||||||||||||||||||||||||
seq2  AATATTAAACATTCTAAGGAATTC  823

seq1: chr5_71882974_71883879
seq2: B6Ng01-335D18.g_64_971

seq1  GAATTCTGGCATTCAGATATGTAGGGACAAATATCCCATATAAACATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCATTCAGATATGTAGGGACAAATATCCCATATAAACATAGG  50

seq1  AAAAGAAGAGAAAAAAATGAACAGTGCTAGGTGTTTTAGTTTGTGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGAAAAAAATGAACAGTGCTAGGTGTTTTAGTTTGTGTAATA  100

seq1  ATACATTGATGAATCTTAGAAATAACACAGAAAATGAATCTGGAGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGATGAATCTTAGAAATAACACAGAAAATGAATCTGGAGGTCAG  150

seq1  ATGATAGACTAAGGTGTTGAACTTCATTATACAACATCTGAGTAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGACTAAGGTGTTGAACTTCATTATACAACATCTGAGTAAAAGTA  200

seq1  ATTGTATTTGGCAATTAAGTTTAGAATATTAATCAGCTGTATGGGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTGGCAATTAAGTTTAGAATATTAATCAGCTGTATGGGGAAGG  250

seq1  GGTTGAAGAAATGGGTGAAAAGGGGAGATTGCTTAGAAAATTATGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGAAATGGGTGAAAAGGGGAGATTGCTTAGAAAATTATGACATG  300

seq1  GGCCCTAGAGTAGAACCTGCTATTAACTTGCTAAATGGCCACGCTATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAGAGTAGAACCTGCTATTAACTTGCTAAATGGCCACGCTATCAA  350

seq1  ATTGTCTTCTGAATATTTACGTTTATACCCACACTTGGGGCTACTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTCTGAATATTTACGTTTATACCCACACTTGGGGCTACTTTTAA  400

seq1  CCTTGGTCAGAGTATGTTGTTTTGGAGTAGGTAGCAGTCAATGAACGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCAGAGTATGTTGTTTTGGAGTAGGTAGCAGTCAATGAACGGAC  450

seq1  TGGTTAAAGCACTGAAAAATGAGAAAGTGAGTCTTCAAGCCTAAGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGCACTGAAAAATGAGAAAGTGAGTCTTCAAGCCTAAGCAGGA  500

seq1  CATCTACATCAAACCTGGCTCCACCAAGGTCAGAAAGCAAAGAGCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATCAAACCTGGCTCCACCAAGGTCAGAAAGCAAAGAGCATAGA  550

seq1  AGAGAGTACAGAAAGAATGCAAGAGAGCTGGCAGGTGGTAGCAAATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTACAGAAAGAATGCAAGAGAGCTGGCAGGTGGTAGCAAATGCTG  600

seq1  TGACTTGCTGTCTTCTGGACATGGCAGGGCTCTGACACTCATGAACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCTGTCTTCTGGACATGGCAGGGCTCTGACACTCATGAACTTAT  650

seq1  ACAGCAGCTGGGATTGCCTGTGTTAATTGGTTTGGCATTTCTTTTCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTGGGATTGCCTGTGTTAATTGGTTTGGCATTTCTTTTCATTA  700

seq1  TAAAAAATTGGGCAATGTGTGTGAAAACCTAGTTTAGAAAGCATGGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTGGGCAATGTGTGTGAAAACCTAGTTTAGAAAGCATGGAATA  750

seq1  TGAATTATTCTCATATAAAAAGTCTCAATAATAGTGAAGTAAACCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTCTCATATAAAAAGTCTCAATAATAGTGAAGTAAACCATGTG  800

seq1  TACATCAGAATGTCCTATACTTT-CCTAACATGTTTGATAATGCACTATA  849
      ||||||| ||||||||||||||| || | |||||||||||||||||||||
seq2  TACATCACAATGTCCTATACTTTCCCCACCATGTTTGATAATGCACTATA  850

seq1  GTGATGAGATGATATTAAAGATGAACATTATTCTCCACTAATG-GTAAAA  898
      ||||||||||||||||||| ||  || |||||||||||| | |  |||||
seq2  GTGATGAGATGATATTAAATATTTACCTTATTCTCCACTTACGCTTAAAA  900

seq1  ATAGAAAA  906
      ||||||||
seq2  ATAGAAAA  908