BAC Information

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BAC

Clone NameB6Ng01-335F12
Chromosome5 (Build37)
Map Location 11,913,006 - 12,044,960
singlet/doubletdoublet
Overlap geneLOC545732, LOC384144
Upstream geneLOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F12.bB6Ng01-335F12.g
ACCGA120604GA120605
length1,0641,143
definitionB6Ng01-335F12.b B6Ng01-335F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,043,893 - 12,044,960)(11,913,006 - 11,914,164)
sequence
gaattctgctatataagcacaaagtgtatttgccatgtggaaagtttcca
gagtgataaagaataccaacttctaaactgatataaattttttatatgtg
ctgttagtgcatatgcagtccagtactaatacagttaggttcacattagg
aaggccaaacaagagaggaagtgtgaattgccaaactaccatttttagca
gaattttgttccgtcagcagtatgctgggcagttgggatgacactttctg
tttatttgtatgtttgtgggtttgtttgctaacacctctttactgcatgt
aagtagattttggcagacacatgtggattttccaggcaacttaagctgac
attccttgaaactggcatgctatcaatccttcctaacaatagtgaagatg
atggtttactgtgtcttaagtgtagagaacagtgcaccaaaggaaggacc
agtgtctacctcttcctgttttctacaatgacttgcctttagcttagcat
cctgttaacaaaaccagtaaccttatagtaaacatagcctaattgtaaaa
agaaagtttaacactaatggcttgatacactatatctttctagtggttta
tacatttgaataaataatcaaaactgctccaattaatatacatctcacaa
agtggatttgtaaccttaatatattgtgtatctgttaaacttgggccttc
tttggggttttgaattcatacaattgcttctgtgtgtccttgaaacaata
cattaagccacaaacctgactgtagttttgatttcactgtccttggagat
taggagtgttgaaaattttcttaatgtgcttactcaatgtttgcatgctt
tcttttatagtggtttatttatgtcgatctattaactaattttaaaatcc
tgttattgtaactaatattgattattgatgatatttttaaagttctgcat
atattttaatgttaacttttttctaggccagttatattaaaggttgaaga
aatctttccaggcttgtgaactatgaactcctcagaatagaacaatggat
gagataaaagagta
gaattctttctctaggttcgaggcctcctgagtcttctcccttcgacagc
agtacatctgtcggttgtccttgttcagattatgtataggcagccatgct
gttgaggcttactggtgtaacttttctaatagtttaaggaggcaaagtct
gctagaattgctctaccccctcttccacgatgaaatgcccaagctattga
aaaaaatatgaaaagataaaggaaaaatgtgttttgtatctgaattttat
gcaatgtaagatgtacacaacagagcacaagaccttcaaatttgaccatt
aattcaaatatgtaatttattttttaataataaagcctgcatctgtgtat
aaaggattggcatcacacctcctaaagaaatcatacaaacatacagaaaa
cccatgaaagattatacagtgtcttggataaacataagtaataaccccaa
tgaactctaatctcacacttgttaaaatagtcataaccaagaagatgtaa
gactgacatgtgtatgcatacctcatgtgacagaagaaatatttgctacc
aactgctttctgataagactacgtagatatttcaaagcaatgctatgaaa
ttatttttttcttagttgtttataaaccttacctctatatcttgaaaaac
ttgacttcaaaataatgaattcatgttttagataaattctggtgcaatac
actagcaaaatgaaattcacatgtgctggtaataaaattacaagaaaatt
taaaacactaaaaaggtacttcagaaaacaaaattaaaatttacataaag
gccagccctccaacgaccaaataaataccaaaaaaattgaaattggcata
tccaattgatgtttactcaccatccccactgtgtcattttacccaattgc
caagatctaaacacaaactcagaaatgaaatagtaaatagattttactct
atataatgtggtattttccgtaataaaacaagtgtgtcttaaagtagttg
ttgtatcagtcacatataaaagagatgatgatgatgatggatcgatcgat
ggatcgactcgatgatgatggcaaaatggatgataccaatacttcgatag
attttccaggattcaatttacagattcttgatgaagaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12043893_12044960
seq2: B6Ng01-335F12.b_47_1110 (reverse)

seq1  TACTCTTTTTCTCTCCTCCATTGTTCTATTCTGAGGAGTTCATAGTTCAC  50
      ||||| |||| |||| ||||||||||||||||||||||||||||||||||
seq2  TACTC-TTTTATCTCATCCATTGTTCTATTCTGAGGAGTTCATAGTTCAC  49

seq1  AAGCCCTGGGAAGTTTTCTTCCAAACTTTAATATAACTGGCCTAGAAAAA  100
      ||| ||||| ||| |||||| ||| |||||||||||||||||||||||||
seq2  AAG-CCTGGAAAGATTTCTT-CAACCTTTAATATAACTGGCCTAGAAAAA  97

seq1  AGTTAACATTTAAAATATATGCAGAACTTTAAAAATATCATCAATAATCA  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACA-TTAAAATATATGCAGAACTTTAAAAATATCATCAATAATCA  146

seq1  ATATTAGTTACAATAACAGGATTTTAAAATTAGTTAATAGATCGACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTTACAATAACAGGATTTTAAAATTAGTTAATAGATCGACATAA  196

seq1  ATTAACCACTATAAAAGAAAGCATGCAAACATTGAGTAAGCACATTAAGA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACTATAAAAGAAAGCATGCAAACATTGAGTAAGCACATTAAGA  246

seq1  AAATTTTCAACACTCCTAATCTCCAAGGACAGTGAAATCAAAACTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCAACACTCCTAATCTCCAAGGACAGTGAAATCAAAACTACAGT  296

seq1  CAGGTTTGTGGCTTAATGTATTGTTTCAAGGACACACAGAAGCAATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGTGGCTTAATGTATTGTTTCAAGGACACACAGAAGCAATTGTA  346

seq1  TGAATTCAAAACCCCAAAGAAGGCCCAAGTTTAACAGATACACAATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAAACCCCAAAGAAGGCCCAAGTTTAACAGATACACAATATAT  396

seq1  TAAGGTTACAAATCCACTTTGTGAGATGTATATTAATTGGAGCAGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTACAAATCCACTTTGTGAGATGTATATTAATTGGAGCAGTTTTG  446

seq1  ATTATTTATTCAAATGTATAAACCACTAGAAAGATATAGTGTATCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTCAAATGTATAAACCACTAGAAAGATATAGTGTATCAAGCC  496

seq1  ATTAGTGTTAAACTTTCTTTTTACAATTAGGCTATGTTTACTATAAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTAAACTTTCTTTTTACAATTAGGCTATGTTTACTATAAGGTT  546

seq1  ACTGGTTTTGTTAACAGGATGCTAAGCTAAAGGCAAGTCATTGTAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTTGTTAACAGGATGCTAAGCTAAAGGCAAGTCATTGTAGAAAA  596

seq1  CAGGAAGAGGTAGACACTGGTCCTTCCTTTGGTGCACTGTTCTCTACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGGTAGACACTGGTCCTTCCTTTGGTGCACTGTTCTCTACACT  646

seq1  TAAGACACAGTAAACCATCATCTTCACTATTGTTAGGAAGGATTGATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGTAAACCATCATCTTCACTATTGTTAGGAAGGATTGATAGC  696

seq1  ATGCCAGTTTCAAGGAATGTCAGCTTAAGTTGCCTGGAAAATCCACATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTTTCAAGGAATGTCAGCTTAAGTTGCCTGGAAAATCCACATGT  746

seq1  GTCTGCCAAAATCTACTTACATGCAGTAAAGAGGTGTTAGCAAACAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCAAAATCTACTTACATGCAGTAAAGAGGTGTTAGCAAACAAACC  796

seq1  CACAAACATACAAATAAACAGAAAGTGTCATCCCAACTGCCCAGCATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATACAAATAAACAGAAAGTGTCATCCCAACTGCCCAGCATACT  846

seq1  GCTGACGGAACAAAATTCTGCTAAAAATGGTAGTTTGGCAATTCACACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACGGAACAAAATTCTGCTAAAAATGGTAGTTTGGCAATTCACACTT  896

seq1  CCTCTCTTGTTTGGCCTTCCTAATGTGAACCTAACTGTATTAGTACTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGTTTGGCCTTCCTAATGTGAACCTAACTGTATTAGTACTGGA  946

seq1  CTGCATATGCACTAACAGCACATATAAAAAATTTATATCAGTTTAGAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGCACTAACAGCACATATAAAAAATTTATATCAGTTTAGAAGT  996

seq1  TGGTATTCTTTATCACTCTGGAAACTTTCCACATGGCAAATACACTTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCTTTATCACTCTGGAAACTTTCCACATGGCAAATACACTTTGT  1046

seq1  GCTTATATAGCAGAATTC  1068
      ||||||||||||||||||
seq2  GCTTATATAGCAGAATTC  1064

seq1: chr5_11913006_11914164
seq2: B6Ng01-335F12.g_67_1209

seq1  GAATTCTTTCTCTAGGTTCGAGGCCTCCTGAGTCTTCTCCCTTCGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTAGGTTCGAGGCCTCCTGAGTCTTCTCCCTTCGACAGC  50

seq1  AGTACATCTGTCGGTTGTCCTTGTTCAGATTATGTATAGGCAGCCATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCTGTCGGTTGTCCTTGTTCAGATTATGTATAGGCAGCCATGCT  100

seq1  GTTGAGGCTTACTGGTGTAACTTTTCTAATAGTTTAAGGAGGCAAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGCTTACTGGTGTAACTTTTCTAATAGTTTAAGGAGGCAAAGTCT  150

seq1  GCTAGAATTGCTCTACCCCCTCTTCCACGATGAAATGCCCAAGCTATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATTGCTCTACCCCCTCTTCCACGATGAAATGCCCAAGCTATTGA  200

seq1  AAAAAATATGAAAAGATAAAGGAAAAATGTGTTTTGTATCTGAATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATGAAAAGATAAAGGAAAAATGTGTTTTGTATCTGAATTTTAT  250

seq1  GCAATGTAAGATGTACACAACAGAGCACAAGACCTTCAAATTTGACCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAAGATGTACACAACAGAGCACAAGACCTTCAAATTTGACCATT  300

seq1  AATTCAAATATGTAATTTATTTTTTAATAATAAAGCCTGCATCTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATATGTAATTTATTTTTTAATAATAAAGCCTGCATCTGTGTAT  350

seq1  AAAGGATTGGCATCACACCTCCTAAAGAAATCATACAAACATACAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTGGCATCACACCTCCTAAAGAAATCATACAAACATACAGAAAA  400

seq1  CCCATGAAAGATTATACAGTGTCTTGGATAAACATAAGTAATAACCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAAGATTATACAGTGTCTTGGATAAACATAAGTAATAACCCCAA  450

seq1  TGAACTCTAATCTCACACTTGTTAAAATAGTCATAACCAAGAAGATGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTAATCTCACACTTGTTAAAATAGTCATAACCAAGAAGATGTAA  500

seq1  GACTGACATGTGTATGCATACCTCATGTGACAGAAGAAATATTTGCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACATGTGTATGCATACCTCATGTGACAGAAGAAATATTTGCTACC  550

seq1  AACTGCTTTCTGATAAGACTACGTAGATATTTCAAAGCAATGCTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTCTGATAAGACTACGTAGATATTTCAAAGCAATGCTATGAAA  600

seq1  TTATTTTTTTCTTAGTTGTTTATAAACCTTACCTCTATATCTTGAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCTTAGTTGTTTATAAACCTTACCTCTATATCTTGAAAAAC  650

seq1  TTGACTTCAAAATAATGAATTCATGTTTTAGATAAATTCTGGTGCAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCAAAATAATGAATTCATGTTTTAGATAAATTCTGGTGCAATAC  700

seq1  ACTAGCAAAATGAAATTCACATGTGCTGGTAATAAAATTACAAGAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAAATGAAATTCACATGTGCTGGTAATAAAATTACAAGAAAATT  750

seq1  TAAAACACTAAAAAGGTACTTCAGAAAACAAAATTAAAATTTACATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTAAAAAGGTACTTCAGAAAACAAAATTAAAATTTACATAAAG  800

seq1  GCCAGCCCTCCAACGACCAAATAAATACCAAAAAAATTGAAATTGGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCTCCAACGACCAAATAAATACCAAAAAAATTGAAATTGGCATA  850

seq1  TCCAATTGATGTTTACTCACCATCCCCACTGTGTCATTTTACCCAATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTGATGTTTACTCACCATCCCCACTGTGTCATTTTACCCAATTGC  900

seq1  CAAGATCTAAACACAAACTCAGAAATGAAATAGTAAATAGATTTTACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTAAACACAAACTCAGAAATGAAATAGTAAATAGATTTTACTCT  950

seq1  ATATAATGTGGTATTTTCCGTAATAAAACAAGTGTGTCTAAAAGTAGTTG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATAATGTGGTATTTTCCGTAATAAAACAAGTGTGTCTTAAAGTAGTTG  1000

seq1  TTGTATCAGTCAACAATAATAAAAAAGAAGATGATAGATAGATAGATAGA  1050
      ||||||||||| |||   |||||| ||| |||||| ||| ||| ||| ||
seq2  TTGTATCAGTC-ACA--TATAAAAGAGATGATGAT-GAT-GATGGATCGA  1045

seq1  TAGATAGATAGATAGATAGATAGATAGATGGAAAAATGATAGATAACAAA  1100
      | ||| ||| ||    | ||| ||| ||||| ||||||   ||| || ||
seq2  TCGATGGATCGA---CTCGAT-GAT-GATGGCAAAATGGATGAT-ACCAA  1089

seq1  TACATTCGATAGATTTTTTCAAGATTCAAATTTACAGGTTTCTTGATGAA  1150
      ||| ||||||||| |||| || ||||| |||||||| | ||||||||| |
seq2  TAC-TTCGATAGA-TTTTCCAGGATTC-AATTTACA-GATTCTTGATG-A  1134

seq1  AGGATTTTT  1159
      || ||||||
seq2  AGAATTTTT  1143