BAC Information

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BAC

Clone NameB6Ng01-335F22
Chromosome5 (Build37)
Map Location 13,447,240 - 13,578,396
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F22.bB6Ng01-335F22.g
ACCGA120622GA120623
length1,1491,119
definitionB6Ng01-335F22.b B6Ng01-335F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,577,271 - 13,578,396)(13,447,240 - 13,448,350)
sequence
gaattcttagagttgtagaatacacaatttggtagtgcttgattgtacgc
ttaaccaaagtgaccaattttctcttctcatgaccacaatactactgaat
gtaagagctacctgttaagatcttccaaacaacataagtactttttcttt
actagatattttctttatttatactttaaatgttatcccctttcctggtt
tcctctccaacccccccccaattgaccccccttccccctgctcatcaacc
tatccactcctgattccctatcctggcattcccctacactggggcatcaa
gccttctcaggaccaatggtctctcctcattgcttacttttatgaacata
tgaaataatatttcatcaacctatatggtgtatgttgcctacttgtgtaa
aattaaataaaatttaaatcttttattctaaaatgatctaactttactaa
atttaaaatatgtatatggacactgttaaaatacaaaaatagctattgag
taaaatatcattagacactgaagtactataaatctaaatttaaagattgt
tgttatcatttatcagggaaacaaattcagaaggcacagatgataaaact
ttcattcttttagtttgttataataacaatacctctttgcacttgatgtc
ttttactacctgcttgcctaccaatctataaaatatgctggatattaaga
taatctgtcaagttcaaatgcaaaattaacaaaacacagggatgactata
ctatattatgatagtacctgtttagtagaaagctccattgccgaaatagt
tgttggttcctaagaaataaacaaaagaagtgcttgataaatgagaaaag
ttaatgagtaaattggttaacacacttacaagctctgagagaaataatgt
cactgcctacacaaatactttaagtggaaaataaaatctgtgaaagaggc
taatgaggtaagtgctaaataagccgaagcaaacaaggggcacactagcc
atcatctagatattcttctgggatccctacctgccagtttggaacttgtt
gttttgttcgctcatggaatggaccctaagagaacaagttcaaggaaggt
cttatactctaaggtcccaggaaaatgtaatgctctacactttcccccc

gaattcacaggtccatttttaaatgtgtagtttgtttccagggtgatttc
atatataagctactaaaaccgtaactgtctatatgtagaaatgcacaatt
cttgccaaacttgtattcagctagtaacatagttttcagttggaaggatc
ccgtcactgtttaaaattaaagtgtacaaagtcatttttattactcagat
ttggtgatatagatgataacaaaatacttcattgttcttaaaatgaagag
tatacaaagtccatatagttaatattatatatgtataaaagcattagtat
acaatatttcatgcctctatcttttattccttccctatataaagttacca
gtgttaatattagtacctgacatagtttgaatatggtatcctcaaaacat
cttgtgttgaagtactcgtctccaggaggccaagccacacattgagaagt
acaggcttgagattaatctacattaatttattgatgggcttataatgtca
aagcattatgtatgggttgggaaataggaggtagggcctggatgtaggaa
agacctcattgagggaatacctttgaacaatatgtcttgtcactattcct
gtgtgatgcccttggcttcctggtgaacagctttccgttcctgtgccctt
cgtccatgatgactcttccttgctatggccttaaaagaaatgaaaccagt
agaacacaaattacaaacggtgaaactgttcatccacatatagtgtccct
tacattgtttgctcaggcatctgtcacagtgataaattgtctaaatacag
aatgctcagtaagacaggtataagttgtatttatgaaagtatattccata
tgggaccttaatttctttttattaatcattttattcattcacatttcaaa
ttatatccctgtaatgcctccacaaacctcccattcttatctccctctta
cccccttcttctttgcctctataagggtgctcctctactcacacacctac
tccctcactgctcttagcatccctctatagctggggcatccagccttcca
taggaacagggacctccctctcactggaagtcaaataagggtcattttcc
attgcttgatgatctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13577271_13578396
seq2: B6Ng01-335F22.b_46_1194 (reverse)

seq1  GGGGGGAAA-TGTAGACAATTTACATTTTCTTGG---CTT--AGTAT-AG  43
      ||||||||| ||||||  | |||||||||| |||   |||  ||||| ||
seq2  GGGGGGAAAGTGTAGAGCA-TTACATTTTCCTGGGACCTTAGAGTATAAG  49

seq1  ACC-TCCT--GACTTG-TCTCT--AGGCCCATCCATTGAGCG-ACAAA--  84
      ||| ||||   ||||| |||||   || |||| |  |||||| |||||  
seq2  ACCTTCCTTGAACTTGTTCTCTTAGGGTCCATTCCATGAGCGAACAAAAC  99

seq1  CACAAGT--CCAACT-GCAGGTAGGATCCCCAGA--GATATCTAGATGAT  129
       ||||||  | |||| |||||||||   ||||||   |||||||||||||
seq2  AACAAGTTCCAAACTGGCAGGTAGGGATCCCAGAAGAATATCTAGATGAT  149

seq1  -GCTAGTGTG-CCCTTGTTTGCTTC-GCTTATTTAGCACTTACCTCATTA  176
       ||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GGCTAGTGTGCCCCTTGTTTGCTTCGGCTTATTTAGCACTTACCTCATTA  199

seq1  GCCTCTTTCACAGATTTTA-TTTCCACTTAAAGTATTTGTTGTAGGCAGT  225
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  GCCTCTTTCACAGATTTTATTTTCCACTTAAAGTATTTG-TGTAGGCAGT  248

seq1  GACATTATTTCTCTCAGAGCTTGTAAGTGTGTTAACCAATTTACTCATTA  275
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTTCTCTCAGAGCTTGTAAGTGTGTTAACCAATTTACTCATTA  298

seq1  ACTTTTCTCATTTATCAAGCACTTCTTTTGTTTATTTCTTAGGAACCAAC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCATTTATCAAGCACTTCTTTTGTTTATTTCTTAGGAACCAAC  348

seq1  AACTATTTCGGCAATGGAGCTTTCTACTAAACAGGTACTATCATAATATA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTCGGCAATGGAGCTTTCTACTAAACAGGTACTATCATAATATA  398

seq1  GTATAGTCATCCCTGTGTTTTGTTAATTTTGCATTTGAACTTGACAGATT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCATCCCTGTGTTTTGTTAATTTTGCATTTGAACTTGACAGATT  448

seq1  ATCTTAATATCCAGCATATTTTATAGATTGGTAGGCAAGCAGGTAGTAAA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATATCCAGCATATTTTATAGATTGGTAGGCAAGCAGGTAGTAAA  498

seq1  AGACATCAAGTGCAAAGAGGTATTGTTATTATAACAAACTAAAAGAATGA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAAGTGCAAAGAGGTATTGTTATTATAACAAACTAAAAGAATGA  548

seq1  AAGTTTTATCATCTGTGCCTTCTGAATTTGTTTCCCTGATAAATGATAAC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATCATCTGTGCCTTCTGAATTTGTTTCCCTGATAAATGATAAC  598

seq1  AACAATCTTTAAATTTAGATTTATAGTACTTCAGTGTCTAATGATATTTT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTTTAAATTTAGATTTATAGTACTTCAGTGTCTAATGATATTTT  648

seq1  ACTCAATAGCTATTTTTGTATTTTAACAGTGTCCATATACATATTTTAAA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATAGCTATTTTTGTATTTTAACAGTGTCCATATACATATTTTAAA  698

seq1  TTTAGTAAAGTTAGATCATTTTAGAATAAAAGATTTAAATTTTATTTAAT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAAGTTAGATCATTTTAGAATAAAAGATTTAAATTTTATTTAAT  748

seq1  TTTACACAAGTAGGCAACATACACCATATAGGTTGATGAAATATTATTTC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAAGTAGGCAACATACACCATATAGGTTGATGAAATATTATTTC  798

seq1  ATATGTTCATAAAAGTAAGCAATGAGGAGAGACCATTGGTCCTGAGAAGG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCATAAAAGTAAGCAATGAGGAGAGACCATTGGTCCTGAGAAGG  848

seq1  CTTGATGCCCCAGTGTAGGGGAATGCCAGGATAGGGAATCAGGAGTGGAT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCCCCAGTGTAGGGGAATGCCAGGATAGGGAATCAGGAGTGGAT  898

seq1  AGGTTGATGAGCAGGGGGAAGGGGGGTCAATTGGGGGGGGGTTGGAGAGG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGAGCAGGGGGAAGGGGGGTCAATTGGGGGGGGGTTGGAGAGG  948

seq1  AAACCAGGAAAGGGGATAACATTTAAAGTATAAATAAAGAAAATATCTAG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAAAGGGGATAACATTTAAAGTATAAATAAAGAAAATATCTAG  998

seq1  TAAAGAAAAAGTACTTATGTTGTTTGGAAGATCTTAACAGGTAGCTCTTA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAGTACTTATGTTGTTTGGAAGATCTTAACAGGTAGCTCTTA  1048

seq1  CATTCAGTAGTATTGTGGTCATGAGAAGAGAAAATTGGTCACTTTGGTTA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTAGTATTGTGGTCATGAGAAGAGAAAATTGGTCACTTTGGTTA  1098

seq1  AGCGTACAATCAAGCACTACCAAATTGTGTATTCTACAACTCTAAGAATT  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTACAATCAAGCACTACCAAATTGTGTATTCTACAACTCTAAGAATT  1148

seq1  C  1126
      |
seq2  C  1149


seq1: chr5_13447240_13448350
seq2: B6Ng01-335F22.g_68_1186

seq1  GAATTCACAGGTCCATTTTTAAATGTGTAGTTTGTTTCCAGGGTGATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTCCATTTTTAAATGTGTAGTTTGTTTCCAGGGTGATTTC  50

seq1  ATATATAAGCTACTAAAACCGTAACTGTCTATATGTAGAAATGCACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAGCTACTAAAACCGTAACTGTCTATATGTAGAAATGCACAATT  100

seq1  CTTGCCAAACTTGTATTCAGCTAGTAACATAGTTTTCAGTTGGAAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAACTTGTATTCAGCTAGTAACATAGTTTTCAGTTGGAAGGATC  150

seq1  CCGTCACTGTTTAAAATTAAAGTGTACAAAGTCATTTTTATTACTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCACTGTTTAAAATTAAAGTGTACAAAGTCATTTTTATTACTCAGAT  200

seq1  TTGGTGATATAGATGATAACAAAATACTTCATTGTTCTTAAAATGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATATAGATGATAACAAAATACTTCATTGTTCTTAAAATGAAGAG  250

seq1  TATACAAAGTCCATATAGTTAATATTATATATGTATAAAAGCATTAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGTCCATATAGTTAATATTATATATGTATAAAAGCATTAGTAT  300

seq1  ACAATATTTCATGCCTCTATCTTTTATTCCTTCCCTATATAAAGTTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTCATGCCTCTATCTTTTATTCCTTCCCTATATAAAGTTACCA  350

seq1  GTGTTAATATTAGTACCTGACATAGTTTGAATATGGTATCCTCAAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATATTAGTACCTGACATAGTTTGAATATGGTATCCTCAAAACAT  400

seq1  CTTGTGTTGAAGTACTCGTCTCCAGGAGGCCAAGCCACACATTGAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTGAAGTACTCGTCTCCAGGAGGCCAAGCCACACATTGAGAAGT  450

seq1  ACAGGCTTGAGATTAATCTACATTAATTTATTGATGGGCTTATAATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTGAGATTAATCTACATTAATTTATTGATGGGCTTATAATGTCA  500

seq1  AAGCATTATGTATGGGTTGGGAAATAGGAGGTAGGGCCTGGATGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTATGTATGGGTTGGGAAATAGGAGGTAGGGCCTGGATGTAGGAA  550

seq1  AGACCTCATTGAGGGAATACCTTTGAACAATATGTCTTGTCACTATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCATTGAGGGAATACCTTTGAACAATATGTCTTGTCACTATTCCT  600

seq1  GTGTGATGCCCTTGGCTTCCTGGTGAACAGCTTTCCGTTCCTGTGCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGCCCTTGGCTTCCTGGTGAACAGCTTTCCGTTCCTGTGCCCTT  650

seq1  CGTCCATGATGACTCTTCCTTGCTATGGCCTTAAAAGAAATGAAACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATGATGACTCTTCCTTGCTATGGCCTTAAAAGAAATGAAACCAGT  700

seq1  AGAACACAAATTACAAACGGTGAAACTGTTCATCCACATATAGTGTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAATTACAAACGGTGAAACTGTTCATCCACATATAGTGTCCCT  750

seq1  TACATTGTTTGCTCAGGCATCTGTCACAGTGATAAATTGTCT-AATACAG  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACATTGTTTGCTCAGGCATCTGTCACAGTGATAAATTGTCTAAATACAG  800

seq1  AATGCTCAGTAAGACAGGTATAAG-TGTATTATTGAAAGTATATTCCATA  848
      |||||||||||||||||||||||| ||||||  |||||||||||||||||
seq2  AATGCTCAGTAAGACAGGTATAAGTTGTATTTATGAAAGTATATTCCATA  850

seq1  T-GGACCTTAATTCTTTTTTATTAATCATTTTATTCATTCACATTTCAAA  897
      | |||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TGGGACCTTAATTTCTTTTTATTAATCATTTTATTCATTCACATTTCAAA  900

seq1  TTATATCCCTGTTATGCCTCCACAAACCTCCCATTC-TATCTTCCCTCTT  946
      |||||||||||| ||||||||||||||||||||||| |||| ||||||||
seq2  TTATATCCCTGTAATGCCTCCACAAACCTCCCATTCTTATC-TCCCTCTT  949

seq1  ACCCCC-TCCTCTTTGCCTCTATAAGGGTGCTCCTCTACTCACACACCTA  995
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTCTTCTTTGCCTCTATAAGGGTGCTCCTCTACTCACACACCTA  999

seq1  CTCCCTCACTGCTC-TAGCATCCCTCTAT-GCTGGGGCATCAAGCC-TCC  1042
      |||||||||||||| |||||||||||||| ||||||||||| |||| |||
seq2  CTCCCTCACTGCTCTTAGCATCCCTCTATAGCTGGGGCATCCAGCCTTCC  1049

seq1  ATAGGAACAAGGGCCTCCCTTCTCACT-GATGTCAGATAA-GGTCATTTT  1090
      ||||||||| || |||||| ||||||| || |||| |||| |||||||||
seq2  ATAGGAACAGGGACCTCCC-TCTCACTGGAAGTCAAATAAGGGTCATTTT  1098

seq1  CTACTGCATGTGTATCTGGAG  1111
      | | ||| ||   ||||||||
seq2  CCATTGCTTGATGATCTGGAG  1119


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