BAC Information

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BAC

Clone NameB6Ng01-335K18
Chromosome5 (Build37)
Map Location 77,200,251 - 77,201,411
singlet/doubletsinglet
Overlap genenone
Upstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299
Downstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335K18.bB6Ng01-335K18.g
ACCGA120823GA120824
length7941,143
definitionB6Ng01-335K18.b B6Ng01-335K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgccatgtcaactactttcctgaacaggccaaccatcactga
aaaacttcctagactcctgtatctcagcccccttggctctactgctgctc
atttcccctgctgtctgttttgaaatgcctgggaacatttattgagctcg
atacactatgaactaaaaaatgaagaggatgacttctcttcttccagaga
gaactcagagacttgcctgcggacagtaaactgcaatggacaagggctcc
tcaagccagctgcatgctggtccatgtctgaccagcaacttctttttttt
ttttttttttaaagatttatttatttattatatgtaagtacactgtagct
gtcttcagacactccagaagagggagtcagatcttgttacagatggttgt
gagccaccatgtggttgctgggatttgaactccggacctttggaagagca
gtcggatgctcttacctgctgagccatctcaccagccccctgaccagcaa
cttctataagtcttgggctcatcatagatttctcctcgtctctaagggat
atgtacccagagtgtcaccagagagcctgagttatttcccagaattccct
tcactgatagtccctgagcctcggtttttcttccagcaacacagactact
aaaacctgtcctgggttttccaccctctttgcctgggcagatttctcaat
aaagcactttcaaaaaagaaatctgctgcctagacttggccttgttcttc
caagttcctcttctcttactattttttttggtgttgtcgctgtt
gaattcactctgtaggccaggatggcctcaaactcagaaatctgcctgcc
tctgcctcccaagtgctggaattaaaggcgtgcgccaccacaccctgctg
cagcttgacttttaactctgatttccatttgtcttctttttccctgggat
agtccttgatagttctcacagtggcttggagcacagtgggagagtgtgga
ctgaacccgcctttcttggcaggacagaagggagatgagagggacgggga
atccttgctgcttgactctcagtgtgtggtatagccttgtcttgctcgaa
ctttcaacagctcagtttgtattttaaaaggaagtagaaatggcttattt
agatgactcacacacttcccttttgaacagtgacaatcagacctggagta
agagtagtcagggaaggcattctgcattaggctaagattgaatgtctgtc
cctccctctgtccctctcatccccacctgtggatatacaccatctgcagg
gatgcacacggtccgccaaggggactttacagtgtctgagaaagccatgc
cccactataattttctgtgacttaagacgatgaaactgaccatgtccttt
gagacgttccagatcctgtgcaggacgatttttaaagtttttttgttgtt
cttgatgatgtgagtctcctacacagttctgattttctctcatcagaaat
cacaaagtctacctggctgtgtgatcatccactgctacatagttgcatgt
tatctggaggcataaaagagtgggcttcccaggtgcccgcctctcatgta
aatcccgaaaaacccagatttcatttgtgggttaaaatatctgtatataa
gccaggtgtggtggtacaggcataaacaccgctactcaggagaccgaggc
aagatgatcccttgagcccagaggccagtctagggaagagagtgaggctc
atctgaattaaaatataatttgtgctgtatagcttccactcccatccctt
tcagatacagaaatgtgtagtgcccaaacctgagtttcaatcaaggagag
gctgaagagatggcctcagtgtacgggcactgactgctttcaagaggtcc
tgagttcatccagcaccacatgggtgctcaaccatcgtaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77200251_77201411
seq2: B6Ng01-335K18.g_65_1207

seq1  GAATTCACTCTGTAGGCCAGGATGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCCAGGATGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGCGCCACCACACCCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGCGCCACCACACCCTGCTG  100

seq1  CAGCTTGACTTTTAACTCTGATTTCCATTTGTCTTCTTTTTCCCTGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGACTTTTAACTCTGATTTCCATTTGTCTTCTTTTTCCCTGGGAT  150

seq1  AGTCCTTGATAGTTCTCACAGTGGCTTGGAGCACAGTGGGAGAGTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGATAGTTCTCACAGTGGCTTGGAGCACAGTGGGAGAGTGTGGA  200

seq1  CTGAACCCGCCTTTCTTGGCAGGACAGAAGGGAGATGAGAGGGACGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCGCCTTTCTTGGCAGGACAGAAGGGAGATGAGAGGGACGGGGA  250

seq1  ATCCTTGCTGCTTGACTCTCAGTGTGTGGTATAGCCTTGTCTTGCTCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCTGCTTGACTCTCAGTGTGTGGTATAGCCTTGTCTTGCTCGAA  300

seq1  CTTTCAACAGCTCAGTTTGTATTTTAAAAGGAAGTAGAAATGGCTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACAGCTCAGTTTGTATTTTAAAAGGAAGTAGAAATGGCTTATTT  350

seq1  AGATGACTCACACACTTCCCTTTTGAACAGTGACAATCAGACCTGGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTCACACACTTCCCTTTTGAACAGTGACAATCAGACCTGGAGTA  400

seq1  AGAGTAGTCAGGGAAGGCATTCTGCATTAGGCTAAGATTGAATGTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTCAGGGAAGGCATTCTGCATTAGGCTAAGATTGAATGTCTGTC  450

seq1  CCTCCCTCTGTCCCTCTCATCCCCACCTGTGGATATACACCATCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTGTCCCTCTCATCCCCACCTGTGGATATACACCATCTGCAGG  500

seq1  GATGCACACGGTCCGCCAAGGGGACTTTACAGTGTCTGAGAAAGCCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACACGGTCCGCCAAGGGGACTTTACAGTGTCTGAGAAAGCCATGC  550

seq1  CCCACTATAATTTTCTGTGACTTAAGACGATGAAACTGACCATGTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATAATTTTCTGTGACTTAAGACGATGAAACTGACCATGTCCTTT  600

seq1  GAGACGTTCCAGATCCTGTGCAGGACGATTTTTAAAGTTTTTTTGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGTTCCAGATCCTGTGCAGGACGATTTTTAAAGTTTTTTTGTTGTT  650

seq1  CTTGATGATGTGAGTCTCCTACACAGTTCTGATTTTCTCTCATCAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGATGTGAGTCTCCTACACAGTTCTGATTTTCTCTCATCAGAAAT  700

seq1  CACAAAGTCTACCTGGCTGTGTGATCATCCACTGCTACATAGTTGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTCTACCTGGCTGTGTGATCATCCACTGCTACATAGTTGCATGT  750

seq1  TATCTGGAGGCATAAAAGAGTGGGCTTCCCAGGTGCCCGCCTCTCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGAGGCATAAAAGAGTGGGCTTCCCAGGTGCCCGCCTCTCATGTA  800

seq1  AATCCCGAAAAACCCAGATTTCATTTGTGGGTTAAAATATCTGTATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGAAAAACCCAGATTTCATTTGTGGGTTAAAATATCTGTATATAA  850

seq1  GCCAGGTGTGGTGGTACAGGCATAAACACCGCTACTCAGGAGACCGAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGTGGTGGTACAGGCATAAACACCGCTACTCAGGAGACCGAGGC  900

seq1  AAGATGATCCCTTGAGCCCAGAGGCCAGTCTAGGGAAGAGAGTGAGGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGATGATCCCTTGAGCCCAGAGGCCAGTCTAGGGAAGAGAGTGAGG-CT  949

seq1  CATCTGAATTAAAATATAATTTGTTGCTGTATAGCTTTCCACTCCCATCC  1000
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CATCTGAATTAAAATATAATTTG-TGCTGTATAGC-TTCCACTCCCATCC  997

seq1  CTTTCAGATACAAGGAAATGTGTAGTGCCCAAACCTGAGTTTCAAAATCA  1050
      ||||||||||||  |||||||||||||||||||||||||||||  |||| 
seq2  CTTTCAGATACA--GAAATGTGTAGTGCCCAAACCTGAGTTTC--AATC-  1042

seq1  AAGAAGAGGGCTGGAGAGATGG-CTCAGTGGTTACGGGCACTGACTGCTT  1099
      ||| ||| ||||| |||||||| |||||||  |||||||||||||||| |
seq2  AAGGAGA-GGCTGAAGAGATGGCCTCAGTG--TACGGGCACTGACTGC-T  1088

seq1  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAAC  1149
      ||| ||||||||||||||||    ||||| |||||||||  |||  ||||
seq2  TTCAAGAGGTCCTGAGTTCA---TCCAGC-ACCACATGGGTGCT--CAAC  1132

seq1  CATCTGTAATGG  1161
      |||| |||||||
seq2  CATC-GTAATGG  1143