BAC Information

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BAC

Clone NameB6Ng01-336D15
Chromosome5 (Build37)
Map Location 30,784,244 - 30,865,200
singlet/doubletdoublet
Overlap gene1700001C02Rik, 1700041E20Rik
Upstream geneHlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof
Downstream geneKcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336D15.bB6Ng01-336D15.g
ACCGA121215GA121216
length1,125480
definitionB6Ng01-336D15.b B6Ng01-336D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,864,055 - 30,865,200)(30,784,244 - 30,784,729)
sequence
gaattcacctatagattgttcagagaaggaagccaatctgaatgtctatg
ttctgagtgtatgacactgaggaaagggcaaagttacagatatgataaaa
aataattgatgggtgctagtgtgtcaggagaaagtgggggaggggaatag
acacataagggcattttgaaggtgacaaaatgattcttcctgatattaca
agtggtggataagtagcactatatatttgtggacaggtatagaatagtac
aactcagagacaaaaccctcatgtaaagtatggatttcattaataatgat
gcttcaatactggttggtcaattgtaataaatgtatcatactaacacaaa
atattaatgtaagagagaaactaggtgtgcagggctgggggctcagagaa
tacagggaaactgcactttcttctgcaacttttcatacaccatgtattct
aatctttgatttaagatcaaagtgcttgtttgtttttagacaagatttct
ctgttatcactggctgtattggaactcactatgtagaccaggttcaaact
cacagagatttgtctgtttctgtctccaaagtgctgggatagaaggtgtg
tgtgtgttgccaggcctggctgcctcatggcatttaaagtaaataatata
gttgaagaaagattggaagcaaatatcacgggcagtagtggtgtgacttt
acagatttctctgagtacttttggattgtgcttatttccccagtgttctg
gtgactagcatctgtcactctcaaaagtgtaagagagaggtaaggacata
cacagccaccatagacaaaaggctgttaaaagtcatacctggaaagcggt
gtgagcagataatccagaagaacaaggctgtttatagaaacgaggtgtgc
ttttagactattcataactatatttaaaatgaatttcttgtaggaagtgt
ttagtgggaccatggtttcagaaaaaaagagagagagatccatctgacca
tccttgcctttactggggtgttaaatcatccacattatttcatatactat
gtgaatgctctatacattgtgtaagcagttcaagcaagattatttctacg
aatagaaattcattcccagatcagt
cagacttcttagcagcctggtctcgtttactctctgcatcaaaactgctg
tgtgatgatgtcactatccccaatagatggaggaacggatttcaccagga
acactggggtgggggtggggctgccgcacccctggccagctgtatcttgg
aacaggtggtacagcaacaacctgctgtgtgttctttgccgagctgtaga
cagtccagcagcagcggaagtattaccaagacaagactggcattctgtcc
cgtgttccttactttgtacttcctgtgaaggagccggaccggtaccccct
acccaccgacctgtgagtgtccctctcctcctctctgcggtcaacaaaca
cacatccacagggcatctcctcttcctccagccctggagccatgaccctg
agaaacagttaacacagccagtggtgcctgctattgcagagtcccagatc
cagcagctcttttttggggggtggggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30864055_30865200
seq2: B6Ng01-336D15.b_47_1171 (reverse)

seq1  ACTGATTCTGGGAAATGAATTTCTTTATTCGTAGAAATAATCTTTGCTTG  50
      ||||| |||||| ||||||||||  ||||||||||||||||| |||||||
seq2  ACTGA-TCTGGG-AATGAATTTC--TATTCGTAGAAATAATC-TTGCTTG  45

seq1  AAACCTGCTTTACACAATGTTAATAGAGCCATTCACAATAGTATAATTGA  100
      ||  |||| |||||||||||  |||||| ||||||| ||||||||  |||
seq2  AA--CTGC-TTACACAATGT--ATAGAG-CATTCAC-ATAGTATA--TGA  86

seq1  AATTAAATGTGGATGATTTAAACACCCCAGTTAAAAGGCAAGGATGGTCA  150
      |||  |||||||||||||| |||||||||||  |||||||||||||||| 
seq2  AAT--AATGTGGATGATTT-AACACCCCAGT--AAAGGCAAGGATGGTC-  130

seq1  AGATGGATCTCTCTCTCTTTTTTTCTTGAAACCATGGTCCAACTAAACAC  200
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AGATGGATCTCTCTCTCTTTTTTTC-TGAAACCATGGTCCCACTAAACAC  179

seq1  TTCCTACAAGAAATTCATTTTAAATATAGTTATGAATAGTCTAAAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAAGAAATTCATTTTAAATATAGTTATGAATAGTCTAAAAGCAC  229

seq1  ACCTCGTTTCTATAAACAGCCTTGTTCTTCTGGATTATCTGCTCACACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTTTCTATAAACAGCCTTGTTCTTCTGGATTATCTGCTCACACCG  279

seq1  CTTTCCAGGTATGACTTTTAACAGCCTTTTGTCTATGGTGGCTGTGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGGTATGACTTTTAACAGCCTTTTGTCTATGGTGGCTGTGTATG  329

seq1  TCCTTACCTCTCTCTTACACTTTTGAGAGTGACAGATGCTAGTCACCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCTCTCTCTTACACTTTTGAGAGTGACAGATGCTAGTCACCAGA  379

seq1  ACACTGGGGAAATAAGCACAATCCAAAAGTACTCAGAGAAATCTGTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGAAATAAGCACAATCCAAAAGTACTCAGAGAAATCTGTAAAG  429

seq1  TCACACCACTACTGCCCGTGATATTTGCTTCCAATCTTTCTTCAACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCACTACTGCCCGTGATATTTGCTTCCAATCTTTCTTCAACTATA  479

seq1  TTATTTACTTTAAATGCCATGAGGCAGCCAGGCCTGGCAACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTTTAAATGCCATGAGGCAGCCAGGCCTGGCAACACACACACA  529

seq1  CCTTCTATCCCAGCACTTTGGAGACAGAAACAGACAAATCTCTGTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATCCCAGCACTTTGGAGACAGAAACAGACAAATCTCTGTGAGTT  579

seq1  TGAACCTGGTCTACATAGTGAGTTCCAATACAGCCAGTGATAACAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGTCTACATAGTGAGTTCCAATACAGCCAGTGATAACAGAGAA  629

seq1  ATCTTGTCTAAAAACAAACAAGCACTTTGATCTTAAATCAAAGATTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTAAAAACAAACAAGCACTTTGATCTTAAATCAAAGATTAGAA  679

seq1  TACATGGTGTATGAAAAGTTGCAGAAGAAAGTGCAGTTTCCCTGTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTGTATGAAAAGTTGCAGAAGAAAGTGCAGTTTCCCTGTATTCT  729

seq1  CTGAGCCCCCAGCCCTGCACACCTAGTTTCTCTCTTACATTAATATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCCCAGCCCTGCACACCTAGTTTCTCTCTTACATTAATATTTTG  779

seq1  TGTTAGTATGATACATTTATTACAATTGACCAACCAGTATTGAAGCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTATGATACATTTATTACAATTGACCAACCAGTATTGAAGCATCA  829

seq1  TTATTAATGAAATCCATACTTTACATGAGGGTTTTGTCTCTGAGTTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATGAAATCCATACTTTACATGAGGGTTTTGTCTCTGAGTTGTAC  879

seq1  TATTCTATACCTGTCCACAAATATATAGTGCTACTTATCCACCACTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATACCTGTCCACAAATATATAGTGCTACTTATCCACCACTTGTA  929

seq1  ATATCAGGAAGAATCATTTTGTCACCTTCAAAATGCCCTTATGTGTCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGAAGAATCATTTTGTCACCTTCAAAATGCCCTTATGTGTCTAT  979

seq1  TCCCCTCCCCCACTTTCTCCTGACACACTAGCACCCATCAATTATTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCCACTTTCTCCTGACACACTAGCACCCATCAATTATTTTTT  1029

seq1  ATCATATCTGTAACTTTGCCCTTTCCTCAGTGTCATACACTCAGAACATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCTGTAACTTTGCCCTTTCCTCAGTGTCATACACTCAGAACATA  1079

seq1  GACATTCAGATTGGCTTCCTTCTCTGAACAATCTATAGGTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAGATTGGCTTCCTTCTCTGAACAATCTATAGGTGAATTC  1125

seq1: chr5_30784244_30784729
seq2: B6Ng01-336D15.g_67_552

seq1  GAATTCCAGACTTCTTAGCAGCCTGGTCTCGTTTACTCTCTGCATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTTCTTAGCAGCCTGGTCTCGTTTACTCTCTGCATCAAAA  50

seq1  CTGCTGTGTGATGATGTCACTATCCCCAATAGATGGAGGAACGGATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTGATGATGTCACTATCCCCAATAGATGGAGGAACGGATTTCA  100

seq1  CCAGGAACACTGGGGTGGGGGTGGGGCTGCCGCACCCCTGGCCAGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACACTGGGGTGGGGGTGGGGCTGCCGCACCCCTGGCCAGCTGTA  150

seq1  TCTTGGAACAGGTGGTACAGCAACAACCTGCTGTGTGTTCTTTGCCGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACAGGTGGTACAGCAACAACCTGCTGTGTGTTCTTTGCCGAGC  200

seq1  TGTAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATT  250

seq1  CTGTCCCGTGTTCCTTACTTTGTACTTCCTGTGAAGGAGCCGGACCGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCGTGTTCCTTACTTTGTACTTCCTGTGAAGGAGCCGGACCGGTA  300

seq1  CCCCCTACCCACCGACCTGTGAGTGTCCCTCTCCTCCTCTCTGCGGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACCCACCGACCTGTGAGTGTCCCTCTCCTCCTCTCTGCGGTCAA  350

seq1  CAAACACACATCCACAGGGCATCTCCTCTTCCTCCAGCCCTGGAGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACATCCACAGGGCATCTCCTCTTCCTCCAGCCCTGGAGCCATG  400

seq1  ACCCTGAGAAACAGTTAACACAGCCAGTGGTGCCTGCTATTGCAGAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGAAACAGTTAACACAGCCAGTGGTGCCTGCTATTGCAGAGTCC  450

seq1  CAGATCCAGCAGCTCTTTTTTGGGGGGTGGGGGGCA  486
      ||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAGCAGCTCTTTTTTGGGGGGTGGGGGGCA  486