BAC Information

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BAC

Clone NameB6Ng01-336F04
Chromosome5 (Build37)
Map Location 31,750,582 - 31,867,233
singlet/doubletdoublet
Overlap geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneMrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336F04.bB6Ng01-336F04.g
ACCGA121277GA121278
length1,2191,169
definitionB6Ng01-336F04.b B6Ng01-336F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,866,012 - 31,867,233)(31,750,582 - 31,751,753)
sequence
gaattccataccccactctacagaggcggaggagaaggtgaacagttcag
cgttccgttgcttaggcagactcaggcttgcaattattttgtcaatagtt
ttgttacatcttcctgctttaccagagtttcttaaaacttgactttggga
accttaaacttcctactctttgccttgctgtctaccaacaacagttttga
gccacggtctcacatatactaggctggccacagactccctattaaccaag
aatcctcctgtatctatgtcctgggtactgcgattaggtgtgtgctacaa
tgttcccagggctttgtgtgcacctggctggcacctggctgtcaccacct
gagcaagctatagtttccagccctgctcttaactggacccacactgaaag
ttaactttgggagcaggggatgggaatggctcagcatggaagagggcttg
ctcgataagcatgaggacccaggtttgaacccctagatggacacagctcc
atgtgcctgtatttccagcattgggaggggcggggaattggggcaggaac
gaacagatctagagagctcaatggccagtcagcttgcccaaaacagggtt
tctggtttagcgaggcaaactaggtgtgtcttcaaaagtcactagtttcc
aatctgtttccttcaacatcaatgacagccatgccctttttgccactcaa
gtacgacagaggacagatctggggaaggagaggtgtgagaatcctctgta
aaccataaagttgtaagagcactatgggatggcccaaatctcccactgac
tgttctccctgtgactggcgaatgactctcaaggagaaaacaagggcaga
aacgatgggttggaaagagatttggggagcagcctctggttggagaggga
tttggggcacagctgttggaccttggctaagtccccgggctagcgcgctg
cttcaggtgtcagtttggaaagacactgctgcgctgaaacaacttgcttc
cctcacttcttcagaaggactggctctctttgatccttttttctgacttg
gagcttttcctcagacttggcaagtagctgaatagtcgtgattctctact
gcctcgtgtggattgctccctaacatgcctgcacatgggcttcgaaggga
atctgagggacaaagcctacctgatcaggtaaggccaacgctaagccttc
caatcagcactgttcaggg
gaattcttctgggtttaatcctgagtcaaaacctcagtgcataagttctg
taaagcccagttcagggccacagttgcaaagcataaagtcctttgagttg
acccctgactcagagtctcaaagtacaaaatctgttctgttaaactctag
atcaccttctcaaggtgtgggttcatctaacttaatgctaggggcaaagt
ttcaaaagaacccacttttgaagaacccacttttttggggggggttatgg
caggaaagtgcacaacctgtattaagtttgaggcctcagtcaaatggtgt
gaattctgtggctttaccaaggtcaccacctgaagacagaaagtttccct
tgcactaaagccatgttttcaagatacaaaccctaaggagctgataatag
gatccaaacaagaaagtctgaattgccaactctttccttcagaggagaaa
ccaatgatggtattggcaccacagttcaccaggaagctcttagcaggacc
agcactgactagtgtcaaattttcaaatttgtcactgaaatcacagcagc
aaaatacaaaatctttggcatttacttcagagccaaaatggcaaggtgta
aaacaggtaaaattgtcatcagtgtctctgccagaaccaggaaaatctgt
ggagtcaccaccaaagtcaattcttcaaaacatgaaacctgcgaacccaa
tgccccagacaattgattctgtcacaaaatctgctaaagtcatatataga
ccagagcgacaggtggtggactttgcagggatgagcatgaaacctaggta
tcaagtccctaaattgaattttacttcaccaatttatcaagatgtgggat
ctttagaaatgaaaaaagggttgggacataaaagcaaagaaatgatggag
aaatctgtgaggttgggctccaacccaacacataagtcatagaatcatta
gagattcccctgaagctagatctccagtatcagaattttttgatctgact
ccacactaagtgatcagattcaaatcctcagaactaaaccagatcccaga
acctcctgagttacattcttgttcatggcctcatttcagatttccaagag
ttacaacaaataaaggagtatagaatctgaatagaaatgcccctccacgg
tcaagagtcatgttgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31866012_31867233
seq2: B6Ng01-336F04.b_48_1266 (reverse)

seq1  CCCTGGACAGTGCTGATTTGGAAGCTTGGC-TTTGCTTTCCTTGGTCAGG  49
      ||||| |||||||||||| | | |||| || || || || | || |||||
seq2  CCCTGAACAGTGCTGATTGGAAGGCTTAGCGTTGGCCTTACCTGATCAGG  50

seq1  TTGGCTTTTGTCCCTCAGATCCCTTCCGAAGCCCA--TGCAGCAATGTTA  97
      | ||| |||||||||||||| || | |||||||||  |||||  ||||||
seq2  TAGGC-TTTGTCCCTCAGATTCCCTTCGAAGCCCATGTGCAGGCATGTTA  99

seq1  GGGAGCAA-CCACACGAGGGCAGTAGAGAACCACGACTATTCAGCTAACT  146
      |||||||| |||||||| |||||||||||| ||||||||||||||| |||
seq2  GGGAGCAATCCACACGA-GGCAGTAGAGAATCACGACTATTCAGCT-ACT  147

seq1  TGCAAAGTCTGAGGAAAAGGCTCCAAGTCAGAAAAAAAGGATCAAAGAGA  196
      ||| |||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TGCCAAGTCTGAGGAAAA-GCTCCAAGTCAG-AAAAAAGGATCAAAGAGA  195

seq1  GCCAGT-CTTCTGAAGGAAGTTGAGGGAAGCAAGTTGTTTCAGCGCAGCA  245
      |||||| |||||||| |||| |||||||||||||||||||||||||||||
seq2  GCCAGTCCTTCTGAA-GAAG-TGAGGGAAGCAAGTTGTTTCAGCGCAGCA  243

seq1  GTGTCTTTCCAAACCTGACACCTGAAGCAGCGCGCTAGCCCGGGGACTTA  295
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTCCAAA-CTGACACCTGAAGCAGCGCGCTAGCCCGGGGACTTA  292

seq1  GCCAAGGTCCAACAGCTGTGCCCCAAATCCCTCTCCAACCAGAGGCTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTCCAACAGCTGTGCCCCAAATCCCTCTCCAACCAGAGGCTGCT  342

seq1  CCCCAAATCTCTTTCCAACCCATCGTTTCTGCCCTTGTTTTCTCCTTGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATCTCTTTCCAACCCATCGTTTCTGCCCTTGTTTTCTCCTTGAG  392

seq1  AGTCATTCGCCAGTCACAGGGAGAACAGTCAGTGGGAGATTTGGGCCATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCGCCAGTCACAGGGAGAACAGTCAGTGGGAGATTTGGGCCATC  442

seq1  CCATAGTGCTCTTACAACTTTATGGTTTACAGAGGATTCTCACACCTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGCTCTTACAACTTTATGGTTTACAGAGGATTCTCACACCTCTC  492

seq1  CTTCCCCAGATCTGTCCTCTGTCGTACTTGAGTGGCAAAAAGGGCATGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAGATCTGTCCTCTGTCGTACTTGAGTGGCAAAAAGGGCATGGC  542

seq1  TGTCATTGATGTTGAAGGAAACAGATTGGAAACTAGTGACTTTTGAAGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGATGTTGAAGGAAACAGATTGGAAACTAGTGACTTTTGAAGAC  592

seq1  ACACCTAGTTTGCCTCGCTAAACCAGAAACCCTGTTTTGGGCAAGCTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGTTTGCCTCGCTAAACCAGAAACCCTGTTTTGGGCAAGCTGAC  642

seq1  TGGCCATTGAGCTCTCTAGATCTGTTCGTTCCTGCCCCAATTCCCCGCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTGAGCTCTCTAGATCTGTTCGTTCCTGCCCCAATTCCCCGCCC  692

seq1  CTCCCAATGCTGGAAATACAGGCACATGGAGCTGTGTCCATCTAGGGGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATGCTGGAAATACAGGCACATGGAGCTGTGTCCATCTAGGGGTT  742

seq1  CAAACCTGGGTCCTCATGCTTATCGAGCAAGCCCTCTTCCATGCTGAGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGGGTCCTCATGCTTATCGAGCAAGCCCTCTTCCATGCTGAGCC  792

seq1  ATTCCCATCCCCTGCTCCCAAAGTTAACTTTCAGTGTGGGTCCAGTTAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATCCCCTGCTCCCAAAGTTAACTTTCAGTGTGGGTCCAGTTAAG  842

seq1  AGCAGGGCTGGAAACTATAGCTTGCTCAGGTGGTGACAGCCAGGTGCCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTGGAAACTATAGCTTGCTCAGGTGGTGACAGCCAGGTGCCAG  892

seq1  CCAGGTGCACACAAAGCCCTGGGAACATTGTAGCACACACCTAATCGCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCACACAAAGCCCTGGGAACATTGTAGCACACACCTAATCGCAG  942

seq1  TACCCAGGACATAGATACAGGAGGATTCTTGGTTAATAGGGAGTCTGTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGACATAGATACAGGAGGATTCTTGGTTAATAGGGAGTCTGTGG  992

seq1  CCAGCCTAGTATATGTGAGACCGTGGCTCAAAACTGTTGTTGGTAGACAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGTATATGTGAGACCGTGGCTCAAAACTGTTGTTGGTAGACAG  1042

seq1  CAAGGCAAAGAGTAGGAAGTTTAAGGTTCCCAAAGTCAAGTTTTAAGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAAGAGTAGGAAGTTTAAGGTTCCCAAAGTCAAGTTTTAAGAAA  1092

seq1  CTCTGGTAAAGCAGGAAGATGTAACAAAACTATTGACAAAATAATTGCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAAAGCAGGAAGATGTAACAAAACTATTGACAAAATAATTGCAA  1142

seq1  GCCTGAGTCTGCCTAAGCAACGGAACGCTGAACTGTTCACCTTCTCCTCC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTCTGCCTAAGCAACGGAACGCTGAACTGTTCACCTTCTCCTCC  1192

seq1  GCCTCTGTAGAGTGGGGTATGGAATTC  1222
      |||||||||||||||||||||||||||
seq2  GCCTCTGTAGAGTGGGGTATGGAATTC  1219

seq1: chr5_31750582_31751753
seq2: B6Ng01-336F04.g_64_1232

seq1  GAATTCTTCTGGGTTTAATCCTGAGTCAAAACCTCAGTGCATAAGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGGTTTAATCCTGAGTCAAAACCTCAGTGCATAAGTTCTG  50

seq1  TAAAGCCCAGTTCAGGGCCACAGTTGCAAAGCATAAAGTCCTTTGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCCAGTTCAGGGCCACAGTTGCAAAGCATAAAGTCCTTTGAGTTG  100

seq1  ACCCCTGACTCAGAGTCTCAAAGTACAAAATCTGTTCTGTTAAACTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGACTCAGAGTCTCAAAGTACAAAATCTGTTCTGTTAAACTCTAG  150

seq1  ATCACCTTCTCAAGGTGTGGGTTCATCTAACTTAATGCTAGGGGCAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTCTCAAGGTGTGGGTTCATCTAACTTAATGCTAGGGGCAAAGT  200

seq1  TTCAAAAGAACCCACTTTTGAAGAACCCACTTTTTTGGGGGGGGTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAACCCACTTTTGAAGAACCCACTTTTTTGGGGGGGGTTATGG  250

seq1  CAGGAAAGTGCACAACCTGTATTAAGTTTGAGGCCTCAGTCAAATGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGTGCACAACCTGTATTAAGTTTGAGGCCTCAGTCAAATGGTGT  300

seq1  GAATTCTGTGGCTTTACCAAGGTCACCACCTGAAGACAGAAAGTTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTTTACCAAGGTCACCACCTGAAGACAGAAAGTTTCCCT  350

seq1  TGCACTAAAGCCATGTTTTCAAGATACAAACCCTAAGGAGCTGATAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAAAGCCATGTTTTCAAGATACAAACCCTAAGGAGCTGATAATAG  400

seq1  GATCCAAACAAGAAAGTCTGAATTGCCAACTCTTTCCTTCAGAGGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACAAGAAAGTCTGAATTGCCAACTCTTTCCTTCAGAGGAGAAA  450

seq1  CCAATGATGGTATTGGCACCACAGTTCACCAGGAAGCTCTTAGCAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATGGTATTGGCACCACAGTTCACCAGGAAGCTCTTAGCAGGACC  500

seq1  AGCACTGACTAGTGTCAAATTTTCAAATTTGTCACTGAAATCACAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTAGTGTCAAATTTTCAAATTTGTCACTGAAATCACAGCAGC  550

seq1  AAAATACAAAATCTTTGGCATTTACTTCAGAGCCAAAATGGCAAGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAATCTTTGGCATTTACTTCAGAGCCAAAATGGCAAGGTGTA  600

seq1  AAACAGGTAAAATTGTCATCAGTGTCTCTGCCAGAACCAGGAAAATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTAAAATTGTCATCAGTGTCTCTGCCAGAACCAGGAAAATCTGT  650

seq1  GGAGTCACCACCAAAGTCAATTCTTCAAAACATGAAACCTGGGAACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGTCACCACCAAAGTCAATTCTTCAAAACATGAAACCTGCGAACCCAA  700

seq1  TGCCCCAGACAATTGATTCTGTCACAAAATCTGCTAAAGTCATATATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGACAATTGATTCTGTCACAAAATCTGCTAAAGTCATATATAGA  750

seq1  CCAGAGCGACAGGTGGTGGACTTTGCAGGGATGAGCATGAAACCTAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCGACAGGTGGTGGACTTTGCAGGGATGAGCATGAAACCTAGGTA  800

seq1  TCAAGTCCCTAAATTGAATTTTACTTCACCAATTTATCAAGATGTGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCCTAAATTGAATTTTACTTCACCAATTTATCAAGATGTGGGAT  850

seq1  CTTTAGAAATGAAAAAAGGGTTGGGACATAAAAGCAAAGAAATGATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAATGAAAAAAGGGTTGGGACATAAAAGCAAAGAAATGATGGAG  900

seq1  AAATCTGTGAGGTTGGGCTCCAACCCAACACATAAAGTCATAGAATCATT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATCTGTGAGGTTGGGCTCCAACCCAACACAT-AAGTCATAGAATCATT  949

seq1  AGAGATGCCCCTGAAGCTAGATCTCCAAGTATCAGAATTTTTTGATCTGA  1000
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGATTCCCCTGAAGCTAGATCTCC-AGTATCAGAATTTTTTGATCTGA  998

seq1  CTCCAACACTAAGTGATCAAGATTCAAAATCCTCAGAACTAAACCAGATC  1050
      |||| ||||||||||||| |||||| ||||||||||||||||||||||||
seq2  CTCC-ACACTAAGTGATC-AGATTC-AAATCCTCAGAACTAAACCAGATC  1045

seq1  CCAGAAACTCCTGAGTTACATTCTTGGTCATGGCCTCAATTTCAAGATTT  1100
      |||||| ||||||||||||||||||| |||||||||| ||||| ||||||
seq2  CCAGAACCTCCTGAGTTACATTCTTGTTCATGGCCTC-ATTTC-AGATTT  1093

seq1  CAAGGAGTTAC-ACATA-AAAGAAGTTATAGAATCTG-ATAG-AATGGCC  1146
      | | ||||||| ||| | |||| || ||||||||||| |||| |||| ||
seq2  CCAAGAGTTACAACAAATAAAGGAG-TATAGAATCTGAATAGAAATGCCC  1142

seq1  CTCAAC-GTCAAGAGTCATGTTGCAGA  1172
      ||| || ||||||||||||||||||||
seq2  CTCCACGGTCAAGAGTCATGTTGCAGA  1169