BAC Information

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BAC

Clone NameB6Ng01-336L07
Chromosome5 (Build37)
Map Location 56,457,952 - 56,525,868
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L07.bB6Ng01-336L07.g
ACCGA121548GA121549
length4701,184
definitionB6Ng01-336L07.b B6Ng01-336L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,457,952 - 56,458,427)(56,524,679 - 56,525,868)
sequence
ttggtttagttctatactaccccctttttttgtgattaacttcttgagtt
ctttatatatttggatattagccctctattggattttatttggaacttga
ttactttgttgtcttctgagagttctacatctggatctgcatgcaaaaga
atgagagaaacactgtgcctggcttgagaatttgaaacctcaaagaccac
attcaattaaacacttcttccaaaactgtcacacctgctccatcaaggcc
atgcttcctaatatcaccattctttcttactaagcacaaacattttatac
caaatgggggcttttctttttttttttaaagattaattgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaatgcctgtggac
accagaggcattgggtccccaggaacaggaatattatacaggcagttgtg
aggttcccccaagtggctgc

catttctgtacatttttctgatatatgttgatatcattggaaataaagag
gtactggtatacacagatcttaaaaaatgaatccaagacttattttctgc
cttctcatgtgattccttcttagaagaaagattgtatatatgctccttga
tgatattttacatgggatattaaattatgatgattatatctgtctttatc
aaagctgttcttcagggaacatccatgagataatgcgctgaggagttctc
agtacttctccattgtttttccctctttgtaatctttctttgttggggca
tagattaagaattagaaagataagagttttatttcaggtcagagatctga
ctagaattgggattttaagcctgatggtgcccttcattctggcatagttc
gaaggttactccaggtgacgaaagacagagtacagagcctacgtaaaact
gtctctcatagcagagcaccaatccaccaatcaacctagtaagtcactga
tcttaggtggtgaatctatttagttccagttatatttcaaaggtaactaa
tatgtcttattgaagattttaagagggataacccacatacaggtaaatca
agagaaaaaggctaaatcctgctctagtgcctgtgaaaagcttttaccca
ctcagacctgtttgattttccagtgttgccctaatagtttcttgttgaaa
tctacattttgtttacagaattgcctgtgataaaacagactgtcaacacc
atattaaattactctgaagtataaatatgcttagtgtagaatgtggctca
tgccagattactagaaaggtctttggaattctacgcacaagcctgcaaag
gaaaacatatatgctcaatgccatcgtttcttcttgtttatctaccatct
ttgcttatttgtggagtgtgaagcctgggcctaacagagaattctggtat
attaaaggtttcctcaaacaccatattgtagaactacaaaatcctacatt
aaacctgaactggttttgagtatttgcttgctgtgtgttatttgtttgta
gcttagagggaaaaaaaaaacaatgtgctgacagagttatctagtagatc
atgactctatgaaaccttctgattatattgcatgtcagagaaatacatgt
agtctaaagaattaaattgatatatataaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56457952_56458427
seq2: B6Ng01-336L07.b_46_521

seq1  GAATTCTTGGTTTAGTTCTATACTACCCCCTTTTTTTGTGATTAACTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTTAGTTCTATACTACCCCCTTTTTTTGTGATTAACTTCT  50

seq1  TGAGTTCTTTATATATTTGGATATTAGCCCTCTATTGGATTTTATTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTTTATATATTTGGATATTAGCCCTCTATTGGATTTTATTTGGA  100

seq1  ACTTGATTACTTTGTTGTCTTCTGAGAGTTCTACATCTGGATCTGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTACTTTGTTGTCTTCTGAGAGTTCTACATCTGGATCTGCATGC  150

seq1  AAAAGAATGAGAGAAACACTGTGCCTGGCTTGAGAATTTGAAACCTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGAGAGAAACACTGTGCCTGGCTTGAGAATTTGAAACCTCAAA  200

seq1  GACCACATTCAATTAAACACTTCTTCCAAAACTGTCACACCTGCTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATTCAATTAAACACTTCTTCCAAAACTGTCACACCTGCTCCATC  250

seq1  AAGGCCATGCTTCCTAATATCACCATTCTTTCTTACTAAGCACAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGCTTCCTAATATCACCATTCTTTCTTACTAAGCACAAACATT  300

seq1  TTATACCAAATGGGGGCTTTTCTTTTTTTTTTTAAAGATTAATTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAAATGGGGGCTTTTCTTTTTTTTTTTAAAGATTAATTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAATGCCT  400

seq1  GTGGAGACCAGAGGCATTGGGTCCCCAGGAACAGGAATATTATACAGGCA  450
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACCAGAGGCATTGGGTCCCCAGGAACAGGAATATTATACAGGCA  450

seq1  GTTGTGAGGTTCCCCCAAGTGGCTGC  476
      ||||||||||||||||||||||||||
seq2  GTTGTGAGGTTCCCCCAAGTGGCTGC  476


seq1: chr5_56524679_56525868
seq2: B6Ng01-336L07.g_72_1255 (reverse)

seq1  CCATTT--TATATATCAATTTTATATTCTTTTAAGACTTAACATGTATTT  48
      ||||||  |||||||||||||   |||||||  |||||  ||||||||||
seq2  CCATTTTATATATATCAATTT--AATTCTTT--AGACT--ACATGTATTT  44

seq1  CTCTGACATGC-ATATAATCAAGAAGTTTTCCATAGAGTCAATTGATCTA  97
      ||||||||||| |||||||| ||||| ||| ||||||||||  |||||||
seq2  CTCTGACATGCAATATAATC-AGAAGGTTT-CATAGAGTCA--TGATCTA  90

seq1  CTAGATAACTCCTGTCAGCACAT--GTATTTTTTTCCCTCTTAAGCTTAC  145
      |||||||||| ||||||||||||   | |||||||||||| ||||| |||
seq2  CTAGATAACT-CTGTCAGCACATTGTTTTTTTTTTCCCTC-TAAGC-TAC  137

seq1  AAACAAAT-ACACACAGCAAGCAAATACTCAAAACCAGTTCAGGTTTAAT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAACACACAGCAAGCAAATACTCAAAACCAGTTCAGGTTTAAT  187

seq1  GTAGGATTTTGTAGTTCTACAATATGGTGTTTGAGGAAACCTTTAATATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTTTGTAGTTCTACAATATGGTGTTTGAGGAAACCTTTAATATA  237

seq1  CCAGAATTCTCTGTTAGGCCCAGGCTTCACACTCCACAAATAAGCAAAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCTCTGTTAGGCCCAGGCTTCACACTCCACAAATAAGCAAAGA  287

seq1  TGGTAGATAAACAAGAAGAAACGATGGCATTGAGCATATATGTTTTCCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATAAACAAGAAGAAACGATGGCATTGAGCATATATGTTTTCCTT  337

seq1  TGCAGGCTTGTGCGTAGAATTCCAAAGACC-TTCTAGTAATCTGGCATGA  393
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCAGGCTTGTGCGTAGAATTCCAAAGACCTTTCTAGTAATCTGGCATGA  387

seq1  GCCACATTCTACACTAAGCATATTTATACTTCAGAGTAATTTAATATGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTCTACACTAAGCATATTTATACTTCAGAGTAATTTAATATGGT  437

seq1  GTTGACAGTCTGTTTTATCACAGGCAATTCTGTAAACAAAATGTAGATTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGTCTGTTTTATCACAGGCAATTCTGTAAACAAAATGTAGATTT  487

seq1  CAACAAGAAACTATTAGGGCAACACTGGAAAATCAAACAGGTCTGAGTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAAACTATTAGGGCAACACTGGAAAATCAAACAGGTCTGAGTGG  537

seq1  GTAAAAGCTTTTCACAGGCACTAGAGCAGGATTTAGCCTTTTTCTCTTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCTTTTCACAGGCACTAGAGCAGGATTTAGCCTTTTTCTCTTGA  587

seq1  TTTACCTGTATGTGGGTTATCCCTCTTAAAATCTTCAATAAGACATATTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTATGTGGGTTATCCCTCTTAAAATCTTCAATAAGACATATTA  637

seq1  GTTACCTTTGAAATATAACTGGAACTAAATAGATTCACCACCTAAGATCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTTTGAAATATAACTGGAACTAAATAGATTCACCACCTAAGATCA  687

seq1  GTGACTTACTAGGTTGATTGGTGGATTGGTGCTCTGCTATGAGAGACAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTACTAGGTTGATTGGTGGATTGGTGCTCTGCTATGAGAGACAGT  737

seq1  TTTACGTAGGCTCTGTACTCTGTCTTTCGTCACCTGGAGTAACCTTCGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTAGGCTCTGTACTCTGTCTTTCGTCACCTGGAGTAACCTTCGAA  787

seq1  CTATGCCAGAATGAAGGGCACCATCAGGCTTAAAATCCCAATTCTAGTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGAATGAAGGGCACCATCAGGCTTAAAATCCCAATTCTAGTCA  837

seq1  GATCTCTGACCTGAAATAAAACTCTTATCTTTCTAATTCTTAATCTATGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGACCTGAAATAAAACTCTTATCTTTCTAATTCTTAATCTATGC  887

seq1  CCCAACAAAGAAAGATTACAAAGAGGGAAAAACAATGGAGAAGTACTGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAAGAAAGATTACAAAGAGGGAAAAACAATGGAGAAGTACTGAG  937

seq1  AACTCCTCAGCGCATTATCTCATGGATGTTCCCTGAAGAACAGCTTTGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCAGCGCATTATCTCATGGATGTTCCCTGAAGAACAGCTTTGAT  987

seq1  AAAGACAGATATAATCATCATAATTTAATATCCCATGTAAAATATCATCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGATATAATCATCATAATTTAATATCCCATGTAAAATATCATCA  1037

seq1  AGGAGCATATATACAATCTTTCTTCTAAGAAGGAATCACATGAGAAGGCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATATATACAATCTTTCTTCTAAGAAGGAATCACATGAGAAGGCA  1087

seq1  GAAAATAAGTCTTGGATTCATTTTTTAAGATCTGTGTATACCAGTACCTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGTCTTGGATTCATTTTTTAAGATCTGTGTATACCAGTACCTC  1137

seq1  TTTATTTCCAATGATATCAACATATATCAGAAAAATGTACAGAAATG  1190
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCAATGATATCAACATATATCAGAAAAATGTACAGAAATG  1184


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