BAC Information

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BAC

Clone NameB6Ng01-337C18
Chromosome5 (Build37)
Map Location 109,631,472 - 109,632,552
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc18, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589
Downstream geneEG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337C18.bB6Ng01-337C18.g
ACCGA121880GA121881
length1,0851,161
definitionB6Ng01-337C18.b B6Ng01-337C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgcttctctgatgggtaagacccatgcttcttgagggagcac
caaagacaggcacagaatttattcaccaatagctgaaaaagcattggctt
gtataaaataaaagtggggagatgttgggatctaatttggtactcttctg
aagcacagaaaaaaaggagagagaaaaaaatctgtatgccaataagagtc
aagataggtcagggcctgttggcagatttcctagacttctgaggcataga
acaataagaggaggtgcacctgggactcaaggttggccggtgaacattct
actgaccttggttgaatgaacagtcttttggcatgggaataaatgtcttc
tttacattttagaaaattgtttctgttagctgtgactctgtttaccaaga
ttctgtgtagtatataaagcataagagaattaaactcgaggctgccacag
tattaactggaaagccctcccgatctctgacttttgtctctgagtcttct
ttttaatctttcctatagtaattcttgttgccttctcagagaactgtttg
acttagtatagacagggccagtgcatattataaattttcaagatgttgac
ctttttgagttctgtggactgtatcttgggtagtctgtactttttcttct
tcttttgattctaatatccacttgttgtggtttgtatattcttggaccag
ggagtggcaccatttggggttgtggccttgttggaataggtgtgacctgg
ttggagtaggtgtgtcactgtgggtgtaggcttaaaatctcaccctaggt
cagtcttccactagcagcctttggatgaagatgtagaactctcagctctg
cctgcaccatgcctgcctggatactgccatgctcccaccttgatgataat
ggactgaacctctgaaccctgtaagacagccccagtttaaattttgtctt
tataagacttgccttggtcatggtgtctgttcacaggagtaaactctgac
taagacactacttattagtgagtacatatgaggccgtgtccctttgatct
gagtacctcacctccagaatgataattttggtagg
gaattctcttcatgagactaaactagaaaacaaagactcttctgtgtcag
gagccataatgggacaagctaataactagcaggttttgagatggcctgct
ttggattattatgtaatctgtgaaatgttcacccttattaagcaaggcta
taagggattcatttttagcaaagattcatgctattaatatgcttttcctg
ctattattaaacatatataataaccaataagtaatagcacatccctttgg
agcagatctctgcagatcacaaatacatactatcttgtagagatgctata
tagacaaatagatgatttaagtgttaatgatgatcctataagaatcccta
aaattatttctatgattattaggcttttttatagtgggactgctattagg
tcctttttcgatagtcaatactgcaatgagaactctgccagtctctcaag
tgtcaccagttgattgctcttagatggtaaccagactttctcctactcag
agcacattccaagaggttgtaaaacaattaactaaggtcataaaaaggga
actaatgatttattataggtgctaggacagaagataaattattgactggg
tttatctatacaaaacttcactaataacttaattatggttttaaaccttg
agtgaacctgtggagctaagacaggtgatgaatatttagctagataatta
gacctagtgaatatgcatgtaaatatttgctgttgtaaacttctatttca
gtttatgatttgattttttaatatattttattagatattttattcattta
catttcaaatgctatcccctttcctagtttctgcccccaaaatcatctat
tgcctccccctccccctgctccccaacccacccactccgcatcctgaccc
tggcatcctttatactggggcatagaatcttctcaagaccaagatcctct
cctccattgatgccaactaggccatctctgttacatatgcagctagagaa
aagatcaccatgtgtttctttgattggtggattagtccaggagctctgag
gtatggtagtcataatgttgcctcctcaattacgactgcagatccttaag
cttcctagtattactaagctcttcatgggaactcttgctcatacgcaatg
agtagacacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109631472_109632552
seq2: B6Ng01-337C18.b_47_1131

seq1  GAATTCATTGCTTCTCTGATGGGTAAGACCCATGCTTCTTGAGGGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTTCTCTGATGGGTAAGACCCATGCTTCTTGAGGGAGCAC  50

seq1  CAAAGACAGGCACAGAATTTATTCACCAATAGCTGAAAAAGCATTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGGCACAGAATTTATTCACCAATAGCTGAAAAAGCATTGGCTT  100

seq1  GTATAAAATAAAAGTGGGGAGATGTTGGGATCTAATTTGGTACTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATAAAAGTGGGGAGATGTTGGGATCTAATTTGGTACTCTTCTG  150

seq1  AAGCACAGAAAAAAAGGAGAGAGAAAAAAATCTGTATGCCAATAAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAAAAAAAGGAGAGAGAAAAAAATCTGTATGCCAATAAGAGTC  200

seq1  AAGATAGGTCAGGGCCTGTTGGCAGATTTCCTAGACTTCTGAGGCATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGTCAGGGCCTGTTGGCAGATTTCCTAGACTTCTGAGGCATAGA  250

seq1  ACAATAAGAGGAGGTGCACCTGGGACTCAAGGTTGGCCGGTGAACATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGAGGAGGTGCACCTGGGACTCAAGGTTGGCCGGTGAACATTCT  300

seq1  ACTGACCTTGGTTGAATGAACAGTCTTTTGGCATGGGAATAAATGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTTGGTTGAATGAACAGTCTTTTGGCATGGGAATAAATGTCTTC  350

seq1  TTTACATTTTAGAAAATTGTTTCTGTTAGCTGTGACTCTGTTTACCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTAGAAAATTGTTTCTGTTAGCTGTGACTCTGTTTACCAAGA  400

seq1  TTCTGTGTAGTATATAAAGCATAAGAGAATTAAACTCGAGGCTGCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTAGTATATAAAGCATAAGAGAATTAAACTCGAGGCTGCCACAG  450

seq1  TATTAACTGGAAAGCCCTCCCGATCTCTGACTTTTGTCTCTGAGTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTGGAAAGCCCTCCCGATCTCTGACTTTTGTCTCTGAGTCTTCT  500

seq1  TTTTAATCTTTCCTATAGTAATTCTTGTTGCCTTCTCAGAGAACTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTTTCCTATAGTAATTCTTGTTGCCTTCTCAGAGAACTGTTTG  550

seq1  ACTTAGTATAGACAGGGCCAGTGCATATTATAAATTTTCAAGATGTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTATAGACAGGGCCAGTGCATATTATAAATTTTCAAGATGTTGAC  600

seq1  CTTTTTGAGTTCTGTGGACTGTATCTTGGGTAGTCTGTACTTTTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGTTCTGTGGACTGTATCTTGGGTAGTCTGTACTTTTTCTTCT  650

seq1  TCTTTTGATTCTAATATCCACTTGTTGTGGTTTGTATATTCTTGGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGATTCTAATATCCACTTGTTGTGGTTTGTATATTCTTGGACCAG  700

seq1  GGAGTGGCACCATTTGGGGTTGTGGCCTTGTTGGAATAGGTGTGACCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGCACCATTTGGGGTTGTGGCCTTGTTGGAATAGGTGTGACCTGG  750

seq1  TTGGAGTAGGTGTGTCACTGTGGGTGTAGGCTTAAAATCTCACCCTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGTGTGTCACTGTGGGTGTAGGCTTAAAATCTCACCCTAGGT  800

seq1  CAGTCTTCCACTAGCAGCCTTTGGATGAAGATGTAGAACTCTCAGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCACTAGCAGCCTTTGGATGAAGATGTAGAACTCTCAGCTCTG  850

seq1  CCTGCACCATGCCTGCCTGGATACTGCCATGCTCCCACCTTGATGATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCATGCCTGCCTGGATACTGCCATGCTCCCACCTTGATGATAAT  900

seq1  GGACTGAACCTCTGAA-CCTGTAAGACAGCCCCAG-TTAAATTTTGTCTT  948
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  GGACTGAACCTCTGAACCCTGTAAGACAGCCCCAGTTTAAATTTTGTCTT  950

seq1  TATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGGAGTAAAACCCTGA  998
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  TATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGGAGT-AAACTCTGA  999

seq1  CTAAGACACTACTTATTAGTGAGTACATATGAGG-CGTGTCCTTTTGGAT  1047
      |||||||||||||||||||||||||||||||||| ||||||| ||| |||
seq2  CTAAGACACTACTTATTAGTGAGTACATATGAGGCCGTGTCCCTTT-GAT  1048

seq1  CTGAGTTACCTCAC--TCAGAATGATA--TTTTGTAGG  1081
      ||||| ||||||||   ||||||||||  ||| |||||
seq2  CTGAG-TACCTCACCTCCAGAATGATAATTTTGGTAGG  1085