BAC Information

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BAC

Clone NameB6Ng01-337G17
Chromosome5 (Build37)
Map Location 84,518,618 - 84,649,460
singlet/doubletdoublet
Overlap geneEpha5, LOC100039489
Upstream geneSrd5a2l2, LOC100039608, LOC231368
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337G17.bB6Ng01-337G17.g
ACCGA122056GA122057
length1,095941
definitionB6Ng01-337G17.b B6Ng01-337G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,648,369 - 84,649,460)(84,518,618 - 84,519,555)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttactgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttcttaacccaagaattcttactctatggccattatgctc
agaatccaacatgtgttttggagtgtatgtggctgtataggtgtggatgt
ggttccttctaccaggaatcattttcttggatatttgtactctagataac
acagatctctttagactgctccttcctttgaaaaactttctctgcccttt
gcttggataatgtttcttgagaatagctttgggggaaaaaaaaaagctat
taaattttattacctagtccaaaattcctagattatttagggagggagag
gcaactaaggcatctccaatatttctctgtgttaagaagaatttttaaag
atttcatagtttttacatctttaaaataagaagcataattccatctatga
gttgtgacaatgacattaaatattttgtatatactttcttttcatttctt
ttattttgttggaattaaaccctgatgaaaatgtattatagtaaagcatt
catagcctgaaccatatatatggttagaagatcatgtatgttctctctct
ttgtctcacattctctctctttctctctctttcttgctcttcctctctct
ctctctctcttgctctcacttgctctttgtctctcttgctctgtgtgtgc
atgtaaaatttttagatactgtttagaattatttggataattctgtactt
aagaatttgtatgattccctctatccttccctgcatctttcttctttctt
ctttttctctcttaagctgtagacacaattgcctaagggaatactcacaa
tgccttactttttacaaagtatggccattagggtattaagtgcataatca
ttatgaacaaaactggaattataaccagatcttgccacattcttt

gaattcttcatttttaatcgtttaggatgcattgtttagaatcataagtt
ggacagtttaatttctcactcagatgattacattcttatgaagtacatta
aaggcaattttcttttaatgaagtgttatggtgtattataaaggcaggaa
aattctttcttcctctttaaaccttaataattcatttcctttaaaaacta
tacatgatatatttccagaaggtgtaataagtgggggctaacattcaaga
tgggcttcatgatatgcccaggtaaatcataaaaagaattaaagttgaaa
aatggataaaaccttgttttgtatgcttacatcatgaaatatgaggagga
aatgactattgttttaaaattagatttccaagtaataatattcagaaatt
atgaaacaaaaattgatgatggttatgatgtggggaaagataaactttat
ccactgctagtaggaatataaactgataaagcaactatggaaatcagaat
ggtatttcttcaagtaactagtcattgaataactaaatgaaagagttcta
ctattcaatttgatgggctcctagtcataaagaaacactttcacatatgt
tttttgctgtaccattcataataggaaagagagacagtctaaatgtctat
taagagattggtggataaataacacatagcatcaacagtgatatttcttg
caacagaaatgcaatgtagcatttgcagaattaatgggtggaaatataaa
taattattaaatgaaacaaaaacatgccagactcagaactagaaatctgt
atgattttctcttctatatgggagttagatttacaatagtgtgtgataag
gtgtgtgtgtgtgtgtgtgtagtacatatgacagatagaagaaaagtgac
catgaaatgggtatgattataaggggtactgggaacaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84648369_84649460
seq2: B6Ng01-337G17.b_44_1138 (reverse)

seq1  AAAGAATGTGTGTAGAACCTTGGTTATAATTCAA--TTTTTTCATAATTA  48
      ||||||||||   ||| |  |||||||||||| |  ||| |||||||| |
seq2  AAAGAATGTGGCAAGATC--TGGTTATAATTCCAGTTTTGTTCATAATGA  48

seq1  TTATG-ACATAATA-CCTAAT-GCCATACTTTTGTAAAAGTAA-GCA-TG  93
      ||||| || ||||| |||||| ||||||||||   |||||||| ||| ||
seq2  TTATGCACTTAATACCCTAATGGCCATACTTTGTAAAAAGTAAGGCATTG  98

seq1  TGAGTTATCCCTTAGGCAA-TGTGTCTACAGCCTTAAGAGAG-AAAAGAA  141
      |||||  |||||||||||| ||||||||||| |||||||||| |||||||
seq2  TGAGTATTCCCTTAGGCAATTGTGTCTACAG-CTTAAGAGAGAAAAAGAA  147

seq1  GAAAAGGAAGAAAGATGCAGGGAAGGATAGAGGGAATCATACAAATTCTT  191
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAA--GAAGAAAGATGCAGGGAAGGATAGAGGGAATCATACAAATTCTT  195

seq1  AAGTACAGAATTATCCAAATAATTCTAAAACAGTATCTAAAAATTTTACA  241
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTACAGAATTATCCAAATAATTCT-AAACAGTATCTAAAAATTTTACA  244

seq1  TGCACACACAGAGCAAGAGAGACAAAGAGCAAGTGAGAGCAAGAGAGAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAGAGCAAGAGAGACAAAGAGCAAGTGAGAGCAAGAGAGAGA  294

seq1  GAGAGAGAGGAAGAGCAAGAAAGAGAGAGAAAGAGAGAGAATGTGAGACA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGAAGAGCAAGAAAGAGAGAGAAAGAGAGAGAATGTGAGACA  344

seq1  AAGAGAGAGAACATACATGATCTTCTAACCATATATATGGTTCAGGCTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAACATACATGATCTTCTAACCATATATATGGTTCAGGCTAT  394

seq1  GAATGCTTTACTATAATACATTTTCATCAGGGTTTAATTCCAACAAAATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTACTATAATACATTTTCATCAGGGTTTAATTCCAACAAAATA  444

seq1  AAAGAAATGAAAAGAAAGTATATACAAAATATTTAATGTCATTGTCACAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGAAAAGAAAGTATATACAAAATATTTAATGTCATTGTCACAA  494

seq1  CTCATAGATGGAATTATGCTTCTTATTTTAAAGATGTAAAAACTATGAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGATGGAATTATGCTTCTTATTTTAAAGATGTAAAAACTATGAAA  544

seq1  TCTTTAAAAATTCTTCTTAACACAGAGAAATATTGGAGATGCCTTAGTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAATTCTTCTTAACACAGAGAAATATTGGAGATGCCTTAGTTG  594

seq1  CCTCTCCCTCCCTAAATAATCTAGGAATTTTGGACTAGGTAATAAAATTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCCCTAAATAATCTAGGAATTTTGGACTAGGTAATAAAATTT  644

seq1  AATAGCTTTTTTTTTTCCCCCAAAGCTATTCTCAAGAAACATTATCCAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTTTTTTTTTCCCCCAAAGCTATTCTCAAGAAACATTATCCAAG  694

seq1  CAAAGGGCAGAGAAAGTTTTTCAAAGGAAGGAGCAGTCTAAAGAGATCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCAGAGAAAGTTTTTCAAAGGAAGGAGCAGTCTAAAGAGATCTG  744

seq1  TGTTATCTAGAGTACAAATATCCAAGAAAATGATTCCTGGTAGAAGGAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTAGAGTACAAATATCCAAGAAAATGATTCCTGGTAGAAGGAAC  794

seq1  CACATCCACACCTATACAGCCACATACACTCCAAAACACATGTTGGATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCACACCTATACAGCCACATACACTCCAAAACACATGTTGGATTC  844

seq1  TGAGCATAATGGCCATAGAGTAAGAATTCTTGGGTTAAGAAATGGGACCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAATGGCCATAGAGTAAGAATTCTTGGGTTAAGAAATGGGACCT  894

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAGTAAGACAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAGTAAGACAA  944

seq1  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  994

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  1044

seq1  AAAATCAAATAACCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATAACCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATT  1094

seq1  C  1092
      |
seq2  C  1095


seq1: chr5_84518618_84519555
seq2: B6Ng01-337G17.g_62_1002

seq1  GAATTCTTCATTTTTAATCGTTTAGGATGCATTGTTTAGAATCATAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTTTAATCGTTTAGGATGCATTGTTTAGAATCATAAGTT  50

seq1  GGACAGTTTAATTTCTCACTCAGATGATTACATTCTTATGAAGTACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTAATTTCTCACTCAGATGATTACATTCTTATGAAGTACATTA  100

seq1  AAGGCAATTTTCTTTTAATGAAGTGTTATGGTGTATTATAAAGGCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATTTTCTTTTAATGAAGTGTTATGGTGTATTATAAAGGCAGGAA  150

seq1  AATTCTTTCTTCCTCTTTAAACCTTAATAATTCATTTCCTTTAAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTCTTCCTCTTTAAACCTTAATAATTCATTTCCTTTAAAAACTA  200

seq1  TACATGATATATTTCCAGAAGGTGTAATAAGTGGGGGCTAACATTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATATATTTCCAGAAGGTGTAATAAGTGGGGGCTAACATTCAAGA  250

seq1  TGGGCTTCATGATATGCCCAGGTAAATCATAAAAAGAATTAAAGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCATGATATGCCCAGGTAAATCATAAAAAGAATTAAAGTTGAAA  300

seq1  AATGGATAAAACCTTGTTTTGTATGCTTACATCATGAAATATGAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAAACCTTGTTTTGTATGCTTACATCATGAAATATGAGGAGGA  350

seq1  AATGACTATTGTTTTAAAATTAGATTTCCAAGTAATAATATTCAGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATTGTTTTAAAATTAGATTTCCAAGTAATAATATTCAGAAATT  400

seq1  ATGAAACAAAAATTGATGATGGTTATGATGTGGGGAAAGATAAACTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAAAAATTGATGATGGTTATGATGTGGGGAAAGATAAACTTTAT  450

seq1  CCACTGCTAGTAGGAATATAAACTGATAAAGCAACTATGGAAATCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTAGTAGGAATATAAACTGATAAAGCAACTATGGAAATCAGAAT  500

seq1  GGTATTTCTTCAAGTAACTAGTCATTGAATAACTAAATGAAAGAGTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTCAAGTAACTAGTCATTGAATAACTAAATGAAAGAGTTCTA  550

seq1  CTATTCAATTTGATGGGCTCCTAGTCATAAAGAAACACTTTCACATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATTTGATGGGCTCCTAGTCATAAAGAAACACTTTCACATATGT  600

seq1  TTTTTGCTGTACCATTCATAATAGGAAAGAGAGACAGTCTAAATGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGTACCATTCATAATAGGAAAGAGAGACAGTCTAAATGTCTAT  650

seq1  TAAGAGATTGGTGGATAAATAACACATAGCATCAACAGTGATATTTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATTGGTGGATAAATAACACATAGCATCAACAGTGATATTTCTTG  700

seq1  CAACAGAAATGCAATGTAGCATTTGCAGAATTAATGGGTGGAAATATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAATGCAATGTAGCATTTGCAGAATTAATGGGTGGAAATATAAA  750

seq1  TAATTATTAAATGAAACAAAAACATGCCAGACTCAGAACTAGAAATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAAATGAAACAAAAACATGCCAGACTCAGAACTAGAAATCTGT  800

seq1  ATGATTTTCTCTTCTATATGGGAGTTAGATTTACAATAGTGTGTGATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTCTCTTCTATATGGGAGTTAGATTTACAATAGTGTGTGATAAG  850

seq1  GTGTGTGTGTGTGTGTGTGTAG-ACATAGGACAGATAGAAGAAAAGTGAC  899
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTAGTACATATGACAGATAGAAGAAAAGTGAC  900

seq1  CATGAAATGGG-ATGATTATAAAGGGTACTGGG-AGAGGTG  938
      ||||||||||| |||||||||| |||||||||| | |||||
seq2  CATGAAATGGGTATGATTATAAGGGGTACTGGGAACAGGTG  941


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