BAC Information

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BAC

Clone NameB6Ng01-337H17
Chromosome5 (Build37)
Map Location 115,245,301 - 115,406,662
singlet/doubletdoublet
Overlap geneAnkrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1
Upstream geneTmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik
Downstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337H17.bB6Ng01-337H17.g
ACCGA122093GA122094
length939686
definitionB6Ng01-337H17.b B6Ng01-337H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,405,726 - 115,406,662)(115,245,301 - 115,245,984)
sequence
gaattctagaccaaactgtaggacagacagaactacatagaaaagggcta
ctactctttcagaggacgcgagttcaattcctagtactcacctcatgtgt
ttcaaaatcacctctaacacctttttcaggccactgtgggcacctccccc
tatatgacacacacacacacacagacacacgaaaatgtattaaaaataaa
taagtgtttcaggtttagggggccaaactatggtctctggtacctcaagt
cctggccgtggctcctgctctcctgtgaccactctctgagtgtggacaga
aacaagatggccacctcagaggcagtgtgagtggataggtgtgactgggc
caggctggcctcaaactcatagagacctgcctgcttctgcctcttgaatg
ctggtactcatggtaccaagtccccttttagtacggggtggggcttggct
ttggattggactaagaattcacgcatgctaggcaagcctgctaccagtcc
tgagattggatgatttcagtttttgctgccaacttaactgtttttaagca
ccttggggaagagagagactgggggtggggtaggggcggggtcacgtgag
ccgacaagcagaggagggagcggtcaatggcttaccactctgtccctaca
gaattcacccacgcagggcagggcggactgattgaagagcccacaggcga
tgagctgccaactaagaaggggcgtaggaaccggttcaagtggggccccg
catcccagcagatcctgttccaggcctacgagaggcaaaaaaaccccagc
aaggagagcgagagacctttggtggaggagtgtataggttagcgtgatcg
cccatctgggcggaggctaagccggggaagggaaggtgtctttgggtcgg
tcctcaggggctcttcagcatccttgagatgcttcttgg
gaattcctggatggaggagaggctcttgtgcccttgcctgcagtagatga
cccagatacatgcaagcaagaccttggacaagggccatcttcactcattt
atttaggacagccgtccaacagatgtcatgaccttttgccccctgtgctg
gcaggtccgaaacagaagccaagagtggatgctctctttgcctggagtgc
agcacactgataactgtgggagggggaggggatgtctaagccatctgtca
ctggtcgcatcgttttgtggacagtgggacgacgatttccaagtgtcctt
cactaatgtcgggggcgggggtggcctgtaagggctgcaggggtaacctc
tgtacatgtggaaatttttgtggtgttcacttttgtcagaactaaatccg
gattctggggctggaggacagataaagctgaagttgtcaatggttacgaa
gccaaggtaaaagcaagctcttcaactaagattccctttagcttttcagc
ggctatgcaaatgaggggtctgttctgattgcttccctggtctgccggac
ggacggacagtccctggggaggaagttctaaggcatctcctacccccttt
ttcatcttaattgatttttatcagaaaattgggacagcatgctctgagca
ggtactagctttaaggctgttcgaaaatgagtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115405726_115406662
seq2: B6Ng01-337H17.b_45_983 (reverse)

seq1  CCAAG-AGCA-CTCAAGGATGCTG-AGGCCCCCTGAGGACCGACCCAAAG  47
      ||||| |||| ||||||||||||| ||  |||||||||||||||||||||
seq2  CCAAGAAGCATCTCAAGGATGCTGAAGAGCCCCTGAGGACCGACCCAAAG  50

seq1  ACACCTTCCCTTCCCCGGCTTAGCCTCCGCCCTGATGGGCGATCACGCTA  97
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACCTTCCCTTCCCCGGCTTAGCCTCCGCCCAGATGGGCGATCACGCTA  100

seq1  ACCTATTACACTCCTCCACC-AAGGTCTCTCGCTCTTCCTTGCTGGGGTT  146
      ||||| |||||||||||||| |||||||||||||| ||||||||||||||
seq2  ACCTA-TACACTCCTCCACCAAAGGTCTCTCGCTC-TCCTTGCTGGGGTT  148

seq1  TTTTTGCCTCTCGTAGGCCTGGAACAGGATCTGCTGGGATGCGGGGCCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTCTCGTAGGCCTGGAACAGGATCTGCTGGGATGCGGGGCCCC  198

seq1  ACTTGAACCGGTTCCTACGCCCCTTCTTAGTTGGCAGCTCATCGCCTGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACCGGTTCCTACGCCCCTTCTTAGTTGGCAGCTCATCGCCTGTG  248

seq1  GGCTCTTCAATCAGTCCGCCCTGCCCTGCGTGGGTGAATTCTGTAGGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCAATCAGTCCGCCCTGCCCTGCGTGGGTGAATTCTGTAGGGAC  298

seq1  AGAGTGGTAAGCCATTGACCGCTCCCTCCTCTGCTTGTCGGCTCACGTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTAAGCCATTGACCGCTCCCTCCTCTGCTTGTCGGCTCACGTGA  348

seq1  CCCCGCCCCTACCCCACCCCCAGTCTCTCTCTTCCCCAAGGTGCTTAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCTACCCCACCCCCAGTCTCTCTCTTCCCCAAGGTGCTTAAAA  398

seq1  ACAGTTAAGTTGGCAGCAAAAACTGAAATCATCCAATCTCAGGACTGGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAGTTGGCAGCAAAAACTGAAATCATCCAATCTCAGGACTGGTA  448

seq1  GCAGGCTTGCCTAGCATGCGTGAATTCTTAGTCCAATCCAAAGCCAAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTGCCTAGCATGCGTGAATTCTTAGTCCAATCCAAAGCCAAGCC  498

seq1  CCACCCCGTACTAAAAGGGGACTTGGTACCATGAGTACCAGCATTCAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCGTACTAAAAGGGGACTTGGTACCATGAGTACCAGCATTCAAGA  548

seq1  GGCAGAAGCAGGCAGGTCTCTATGAGTTTGAGGCCAGCCTGGCCCAGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCAGGCAGGTCTCTATGAGTTTGAGGCCAGCCTGGCCCAGTCA  598

seq1  CACCTATCCACTCACACTGCCTCTGAGGTGGCCATCTTGTTTCTGTCCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCCACTCACACTGCCTCTGAGGTGGCCATCTTGTTTCTGTCCAC  648

seq1  ACTCAGAGAGTGGTCACAGGAGAGCAGGAGCCACGGCCAGGACTTGAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAGTGGTCACAGGAGAGCAGGAGCCACGGCCAGGACTTGAGGT  698

seq1  ACCAGAGACCATAGTTTGGCCCCCTAAACCTGAAACACTTATTTATTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCATAGTTTGGCCCCCTAAACCTGAAACACTTATTTATTTTT  748

seq1  AATACATTTTCGTGTGTCTGTGTGTGTGTGTGTGTCATATAGGGGGAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTTCGTGTGTCTGTGTGTGTGTGTGTGTCATATAGGGGGAGGT  798

seq1  GCCCACAGTGGCCTGAAAAAGGTGTTAGAGGTGATTTTGAAACACATGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTGGCCTGAAAAAGGTGTTAGAGGTGATTTTGAAACACATGAG  848

seq1  GTGAGTACTAGGAATTGAACTCGCGTCCTCTGAAAGAGTAGTAGCCCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTACTAGGAATTGAACTCGCGTCCTCTGAAAGAGTAGTAGCCCTTT  898

seq1  TCTATGTAGTTCTGTCTGTCCTACAGTTTGGTCTAGAATTC  937
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAGTTCTGTCTGTCCTACAGTTTGGTCTAGAATTC  939

seq1: chr5_115245301_115245984
seq2: B6Ng01-337H17.g_60_745

seq1  GAATTCCTGGATGGAGGAGAGGCTCTTGTGCCCTTGCCTGCAGTAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATGGAGGAGAGGCTCTTGTGCCCTTGCCTGCAGTAGATGA  50

seq1  CCCAGATACATGCAAGCAAGACCTTGGACAAGGGCCATCTTCACTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACATGCAAGCAAGACCTTGGACAAGGGCCATCTTCACTCATTT  100

seq1  ATTTAGGACAGCCGTCCAACAGATGTCATGACCTTTTGCCCCCTGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACAGCCGTCCAACAGATGTCATGACCTTTTGCCCCCTGTGCTG  150

seq1  GCAGGTCCGAAACAGAAGCCAAGAGTGGATGCTCTCTTTGCCTGGAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCGAAACAGAAGCCAAGAGTGGATGCTCTCTTTGCCTGGAGTGC  200

seq1  AGCACACTGATAACTGTGGGAGGGGGAGGGGATGTCTAAGCCATCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTGATAACTGTGGGAGGGGGAGGGGATGTCTAAGCCATCTGTCA  250

seq1  CTGGTCGCATCGTTTTGTGGACAGTGGGACGACGATTTCCAAGTGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCGCATCGTTTTGTGGACAGTGGGACGACGATTTCCAAGTGTCCTT  300

seq1  CACTAATGTCGGGGGCGGGGGTGGCCTGTAAGGGCTGCAGGGGTAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGTCGGGGGCGGGGGTGGCCTGTAAGGGCTGCAGGGGTAACCTC  350

seq1  TGTACATGTGGAAATTTTTGTGGTGTTCACTTTTGTCAGAACTAAATCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGGAAATTTTTGTGGTGTTCACTTTTGTCAGAACTAAATCCG  400

seq1  GATTCTGGGGCTGGAGGACAGATAAAGCTGAAGTTGTCAATGGTTACGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGGGCTGGAGGACAGATAAAGCTGAAGTTGTCAATGGTTACGAA  450

seq1  GCCAAGGTAAAAGCAAGCTCTTCAACTAAGATTCCCTTTAGCTTTTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTAAAAGCAAGCTCTTCAACTAAGATTCCCTTTAGCTTTTCAGC  500

seq1  GGCTATGCAAATGAGGGGTCTGTTCTGATTGCTTCCCTGGTCTGCCGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGCAAATGAGGGGTCTGTTCTGATTGCTTCCCTGGTCTGCCGGAC  550

seq1  GGACGGACAGTCCCTGGGGAGGAAGTTCTAAGGCATCTCCTACCCCCTCT  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACGGACAGTCCCTGGGGAGGAAGTTCTAAGGCATCTCCTACCCCCTTT  600

seq1  TTCATCTT-ACTGATTTTTTTCAGAAAA-TGGGACAGCATGCTCTGAGCA  648
      |||||||| | |||||||| |||||||| |||||||||||||||||||||
seq2  TTCATCTTAATTGATTTTTATCAGAAAATTGGGACAGCATGCTCTGAGCA  650

seq1  GGTCCGTAGCTTTATGGCTGTTCAGAAATGAG-ATGA  684
      ||| | |||||||| ||||||||  ||||||| ||||
seq2  GGTAC-TAGCTTTAAGGCTGTTCGAAAATGAGTATGA  686