BAC Information

Click to search

BAC

Clone NameB6Ng01-337M01
Chromosome5 (Build37)
Map Location 150,618,604 - 150,731,726
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
Downstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337M01.bB6Ng01-337M01.g
ACCGA122278GA122279
length9551,098
definitionB6Ng01-337M01.b B6Ng01-337M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,731,041 - 150,731,726)(150,618,604 - 150,619,708)
sequence
gaattccagtactgacttggatatgtaatatagcggccaagatcacacag
tgttttcttcgagtgggtttacaaacctgggttccctggctgacaggagc
ttggcagagtccatccactctccaggcagtcgaggagctaattttctaca
ctgggaccatgtcacctgtggatggtcttcctgctgatggtcttcctcca
tggatacaagatgactggctgtgagcacggccttcattagtgaccaaccc
agggtaatgaaattatgccctgcgactcagttttcctagctaggaaatta
gataataaaattagtagttttgcttttaagaagattatgggagagatgat
gcagggcaaagtacagcccagtcaacatcagatatgacagattaaaagtt
taaaattctgattaactgccaccaggaatgatgtatatattaaatagaaa
ataagaatagatttggagatagtaaaactaggaaaagaactgtgttatgg
gccaagtaatattcccctaggattcaaactttgaactcctaactcccaat
acttcagaatggggatgaagaagttggagtgggagccttagagaggggat
aaaattatagctttattgttttcatattttattttaaatacatttattac
attcttaatttatatattacataatttataataaatatataagaataaaa
tactctattacattatttttaaaatatttatattttatattttaaataat
ttatttatttttactttgtgtgcatttgtattttgtcttcattatgtctg
tgtgaggatattggatccgtgcagttacagacagttgtgagctgccatgt
gggtgctgggaaattgaacctgggtcctttaggaagactagtcagtgctc
agaactgctaagccaactctgcccctttccccaagaggtgataaagttaa
acaag
gaattcactaatgtgaggatgcgctctgaggtaccatcctctgagagaga
acacagtggcagctgacagcaggtggcagtagagagcagctgacacccaa
gcccccttccagactgatgtctggtttctgggagagggagctctggagtc
tacaaaccttaaagaacgtggttaaaatgggtccccatctgtcttgagaa
ctctctgcaacatggcatggatttagaaccctgataaggctcagtaagta
cataagtaaataagatcaaagagctttgagaaagcatggtttctccccag
agccaggctgagatagatgtctgcagaggatggctacttttgctcagctc
atccctacctcctccactgccatccttcattttgtcttgggtgggtccac
ctcctgctgctggccagcattcactgagtgtacactttatgccaaccact
gcccaggaatctcaaatgagctaacccatttaatcttcacaacaactcta
tgaggtagacctaggtataaaatcttccgcatgcttattctgtgggattg
gtcctcggggtaaatggcccaggaggtttgcccctcgtgtcaagagctgg
gacatagcaccacgtaaaatgagcctgtgtcattatctgtttctgtggca
ccttcagtgactcttcctgtgaacactgtggtcagagagtctccccgaca
gcttattccacagagactgggacttggagagacatagcttcacgtgttgt
taccaaagcgttaagacaaccatgaattcatattgctctctcttcctgag
ctcagccatgctcttccatgcccaaagcatcaactcctctttcagaagcg
tcatcattttattgtgatcattccatattatgagcaggtttgcactttca
caggattggctggtggcaaccagagatatgggtagattggtcccaggcct
attgataaatagcatctacttctctgaaggttaaagagaaatctcggcag
tggggccatatgggaggagagaaagagctacacttccatgataggtggag
ccaagcctcactctaggacttccagtgtatgccttttgcacattcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150731041_150731726
seq2: B6Ng01-337M01.b_44_729 (reverse)

seq1  ATTTATTATAAATTATGTAATATATAAATTAAGAATGTAATAAATGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATAAATTATGTAATATATAAATTAAGAATGTAATAAATGTATT  50

seq1  TAAAATAAAATATGAAAACAATAAAGCTATAATTTTATCCCCTCTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATATGAAAACAATAAAGCTATAATTTTATCCCCTCTCTAAG  100

seq1  GCTCCCACTCCAACTTCTTCATCCCCATTCTGAAGTATTGGGAGTTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACTCCAACTTCTTCATCCCCATTCTGAAGTATTGGGAGTTAGGA  150

seq1  GTTCAAAGTTTGAATCCTAGGGGAATATTACTTGGCCCATAACACAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTTTGAATCCTAGGGGAATATTACTTGGCCCATAACACAGTTC  200

seq1  TTTTCCTAGTTTTACTATCTCCAAATCTATTCTTATTTTCTATTTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGTTTTACTATCTCCAAATCTATTCTTATTTTCTATTTAATAT  250

seq1  ATACATCATTCCTGGTGGCAGTTAATCAGAATTTTAAACTTTTAATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATTCCTGGTGGCAGTTAATCAGAATTTTAAACTTTTAATCTGT  300

seq1  CATATCTGATGTTGACTGGGCTGTACTTTGCCCTGCATCATCTCTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGATGTTGACTGGGCTGTACTTTGCCCTGCATCATCTCTCCCAT  350

seq1  AATCTTCTTAAAAGCAAAACTACTAATTTTATTATCTAATTTCCTAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTAAAAGCAAAACTACTAATTTTATTATCTAATTTCCTAGCTA  400

seq1  GGAAAACTGAGTCGCAGGGCATAATTTCATTACCCTGGGTTGGTCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGAGTCGCAGGGCATAATTTCATTACCCTGGGTTGGTCACTAA  450

seq1  TGAAGGCCGTGCTCACAGCCAGTCATCTTGTATCCATGGAGGAAGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCGTGCTCACAGCCAGTCATCTTGTATCCATGGAGGAAGACCAT  500

seq1  CAGCAGGAAGACCATCCACAGGTGACATGGTCCCAGTGTAGAAAATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAAGACCATCCACAGGTGACATGGTCCCAGTGTAGAAAATTAGC  550

seq1  TCCTCGACTGCCTGGAGAGTGGATGGACTCTGCCAAGCTCCTGTCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGACTGCCTGGAGAGTGGATGGACTCTGCCAAGCTCCTGTCAGCCA  600

seq1  GGGAACCCAGGTTTGTAAACCCACTCGAAGAAAACACTGTGTGATCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCAGGTTTGTAAACCCACTCGAAGAAAACACTGTGTGATCTTGG  650

seq1  CCGCTATATTACATATCCAAGTCAGTACTGGAATTC  686
      ||||||||||||||||||||||||||||||||||||
seq2  CCGCTATATTACATATCCAAGTCAGTACTGGAATTC  686

seq1: chr5_150618604_150619708
seq2: B6Ng01-337M01.g_63_1160

seq1  GAATTCACTAATGTGAGGATGCGCTCTGAGGTACCATCCTCTGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGTGAGGATGCGCTCTGAGGTACCATCCTCTGAGAGAGA  50

seq1  ACACAGTGGCAGCTGACAGCAGGTGGCAGTAGAGAGCAGCTGACACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGGCAGCTGACAGCAGGTGGCAGTAGAGAGCAGCTGACACCCAA  100

seq1  GCCCCCTTCCAGACTGATGTCTGGTTTCTGGGAGAGGGAGCTCTGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTCCAGACTGATGTCTGGTTTCTGGGAGAGGGAGCTCTGGAGTC  150

seq1  TACAAACCTTAAAGAACGTGGTTAAAATGGGTCCCCATCTGTCTTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCTTAAAGAACGTGGTTAAAATGGGTCCCCATCTGTCTTGAGAA  200

seq1  CTCTCTGCAACATGGCATGGATTTAGAACCCTGATAAGGCTCAGTAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAACATGGCATGGATTTAGAACCCTGATAAGGCTCAGTAAGTA  250

seq1  CATAAGTAAATAAGATCAAAGAGCTTTGAGAAAGCATGGTTTCTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAAATAAGATCAAAGAGCTTTGAGAAAGCATGGTTTCTCCCCAG  300

seq1  AGCCAGGCTGAGATAGATGTCTGCAGAGGATGGCTACTTTTGCTCAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTGAGATAGATGTCTGCAGAGGATGGCTACTTTTGCTCAGCTC  350

seq1  ATCCCTACCTCCTCCACTGCCATCCTTCATTTTGTCTTGGGTGGGTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACCTCCTCCACTGCCATCCTTCATTTTGTCTTGGGTGGGTCCAC  400

seq1  CTCCTGCTGCTGGCCAGCATTCACTGAGTGTACACTTTATGCCAACCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGCTGGCCAGCATTCACTGAGTGTACACTTTATGCCAACCACT  450

seq1  GCCCAGGAATCTCAAATGAGCTAACCCATTTAATCTTCACAACAACTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAATCTCAAATGAGCTAACCCATTTAATCTTCACAACAACTCTA  500

seq1  TGAGGTAGACCTAGGTATAAAATCTTCCGCATGCTTATTCTGTGGGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGACCTAGGTATAAAATCTTCCGCATGCTTATTCTGTGGGATTG  550

seq1  GTCCTCGGGGTAAATGGCCCAGGAGGTTTGCCCCTCGTGTCAAGAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGGGTAAATGGCCCAGGAGGTTTGCCCCTCGTGTCAAGAGCTGG  600

seq1  GACATAGCACCACGTAAAATGAGCCTGTGTCATTATCTGTTTCTGTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCACCACGTAAAATGAGCCTGTGTCATTATCTGTTTCTGTGGCA  650

seq1  CCTTCAGTGACTCTTCCTGTGAACACTGTGGTCAGAGAGTCTCCCCGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGACTCTTCCTGTGAACACTGTGGTCAGAGAGTCTCCCCGACA  700

seq1  GCTTATTCCACAGAGACTGGGACTTGGAGAGACATAGCTTCACGTGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCCACAGAGACTGGGACTTGGAGAGACATAGCTTCACGTGTTGT  750

seq1  TACCAAAGCGTTAAGACAACCATGAATTCATATTGCTCTCTCTTCCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGCGTTAAGACAACCATGAATTCATATTGCTCTCTCTTCCTGAG  800

seq1  CTCAGCCATGCTCTTCCATGCCCAAAGCATCAACTCCTCTTTCAGAAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATGCTCTTCCATGCCCAAAGCATCAACTCCTCTTTCAGAAGCG  850

seq1  TCATCATTTTATTGTGATCATTCCATATTATGAGCAGGTTTGCACTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTTATTGTGATCATTCCATATTATGAGCAGGTTTGCACTTTCA  900

seq1  CAGGGTTGGCTGGTGGCAACCAGAGATATGGGTAGATTGGTCCCAGGCCT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGGCTGGTGGCAACCAGAGATATGGGTAGATTGGTCCCAGGCCT  950

seq1  ATTGATAAATAGCATCTACTTCTCTGAAGGTTAAAGAAGAAATCTCGGCA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGATAAATAGCATCTACTTCTCTGAAGGTTAAAG-AGAAATCTCGGCA  999

seq1  AGTGGGCCATATGGGAGAGAGA-AAAGAGCTACACCTTCCATTGATAGGT  1049
         |||||||||||||| |||| ||||||||||| |||||| ||||||||
seq2  GTGGGGCCATATGGGAG-GAGAGAAAGAGCTACA-CTTCCA-TGATAGGT  1046

seq1  GGAGGCAGGCCTCACTTCTAGGACTT-CAGTGTATGCTTTTTGGCAACAA  1098
      |||| || ||||||| |||||||||| |||||||||| |||||    || 
seq2  GGAGCCAAGCCTCAC-TCTAGGACTTCCAGTGTATGCCTTTTG----CAC  1091

seq1  ATTCACA  1105
      |||||||
seq2  ATTCACA  1098