BAC Information

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BAC

Clone NameB6Ng01-337M07
Chromosome5 (Build37)
Map Location 42,602,141 - 42,701,747
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337M07.bB6Ng01-337M07.g
ACCGA122288GA122289
length9991,098
definitionB6Ng01-337M07.b B6Ng01-337M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,701,161 - 42,701,747)(42,602,141 - 42,603,238)
sequence
gaattccatacacaatcaaaataccaccatcagagaatgaacatggcttg
gttctccacatcttggctaacatttgggaggtagtggtagtatatcctcc
ccttgcttaaacaacaacaacaaaaaaattctatttacacactaattcct
aggaatttatattgcatatacaaaacaaaatatgcctgtttttccttagt
gttttcttatataatatataccaacagtaatttcctctccatccactcct
cccagttcctgccacctccccctttccaggggtctactcctcctctgttt
tccttcagaaaaaaaacaggccttctagggataacaactgaagataccac
aagaactcataataagacaagacacaaaccctcatatcaggactgagcaa
agcaacccagtaggagaaaagaatcagacaccctcactccctctgttagg
agtcccacaaaaacaatacaaaacaaaacaaataaaacagttaacaacca
taacatatttacagacaacctagtcctagtgcaggttccattgttgccac
ctcagtttctgtgagcccctaggcaccctgctagttgattctgtgagctc
tgttctcctgtgtcttcaacgtcttctgcttctatgactctccatgcctt
cttctgcagagttctctgagcactgacagaatactcccaatggagagctt
gggttctcttggtatcaaatgtttggctgtgggcctcttcatctgctctc
ttcagctatcaggataagtcctctgataatcattgggctaaacacctgaa
ctggcaattgtctataaccaggctactagtaggaatgggactggaatact
aacccagccacataaccttcaaactacaatctaacctgcttgctatatgt
ggaggaacaatgaaagtgaggacctgtgggaatggtcaaccaatgactgc
tctaacttgatgcccatatctgggaaaaaagagccatacctgaagctgc

gaattctagaatgcagaatgagtgtggcaaaattataggttgttcatttc
tgctgtaatgctatacatcaggaaaaaagcatactaggatagactttcac
agaagtatttgtaaataactcatccatgatcatgataacgaagtctgtgg
catatttctatttactagacttcttttacttttggtgctggagacctctg
cctaccttgtcatcagtaatttatacggaatctatccaacagtttggctg
tcaattcctgggaacaagatgggagaaaaaggaagtgtcaaaagctacac
attttcaatgctataatgaaaatagtatggagaccatggttatcattgaa
gttattatatagagactatagttattaacagtatgctgtattctttaact
gtactgggagcagtctttatattctcaacattcacatgcacccctccctc
cagcacacactattcagtttgtaacctttttttttgctcattaacctacc
ctgggagattttccaaagtcctattttccattcctcccccagaaaacttg
attcaatatttaagtgaacactattaattctcataaggctgtcagagggc
cccatatacatcccactttgagaaatatccttttggatactcttgttcca
tggctaaccccatccccatcccatcccagccccagccccatcctcagccc
catccccatccccatccccagccccagccccatccccagccccagcccca
gccccagccccagccccagccccagccccagccccagccccagccccagc
cccagcttgtaccagcccatgtctataccatcctttttgctggtgttcca
cctcccttttatgttggtatagtgagctctgggttcacccttagctacct
aactcatgtgttaaccttttcagtccctttaggcaggcctcatgccagac
tcagaaatcccactccccctcttatctctgtttcattaaccctttctgca
ctctctaattatagtagccacacagaaaatacaggcttttgcttcatatt
ctgttcgtggattactggattctgtatagtcacctttgtctctaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42701161_42701747
seq2: B6Ng01-337M07.b_48_634 (reverse)

seq1  CAACTAGCAGGGTGCCTAGGGGCTCACAGAAACTGAGGTGGCAACAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGCAGGGTGCCTAGGGGCTCACAGAAACTGAGGTGGCAACAATGG  50

seq1  AACCTGCACTAGGACTAGGTTGTCTGTAAATATGTTATGGTTGTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCACTAGGACTAGGTTGTCTGTAAATATGTTATGGTTGTTAACTG  100

seq1  TTTTATTTGTTTTGTTTTGTATTGTTTTTGTGGGACTCCTAACAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTTTTGTTTTGTATTGTTTTTGTGGGACTCCTAACAGAGGGA  150

seq1  GTGAGGGTGTCTGATTCTTTTCTCCTACTGGGTTGCTTTGCTCAGTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGTCTGATTCTTTTCTCCTACTGGGTTGCTTTGCTCAGTCCTG  200

seq1  ATATGAGGGTTTGTGTCTTGTCTTATTATGAGTTCTTGTGGTATCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGGTTTGTGTCTTGTCTTATTATGAGTTCTTGTGGTATCTTCAG  250

seq1  TTGTTATCCCTAGAAGGCCTGTTTTTTTTCTGAAGGAAAACAGAGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCCCTAGAAGGCCTGTTTTTTTTCTGAAGGAAAACAGAGGAGGA  300

seq1  GTAGACCCCTGGAAAGGGGGAGGTGGCAGGAACTGGGAGGAGTGGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCCCTGGAAAGGGGGAGGTGGCAGGAACTGGGAGGAGTGGATGGA  350

seq1  GAGGAAATTACTGTTGGTATATATTATATAAGAAAACACTAAGGAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATTACTGTTGGTATATATTATATAAGAAAACACTAAGGAAAAAC  400

seq1  AGGCATATTTTGTTTTGTATATGCAATATAAATTCCTAGGAATTAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATTTTGTTTTGTATATGCAATATAAATTCCTAGGAATTAGTGTG  450

seq1  TAAATAGAATTTTTTTGTTGTTGTTGTTTAAGCAAGGGGAGGATATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAATTTTTTTGTTGTTGTTGTTTAAGCAAGGGGAGGATATACTA  500

seq1  CCACTACCTCCCAAATGTTAGCCAAGATGTGGAGAACCAAGCCATGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCTCCCAAATGTTAGCCAAGATGTGGAGAACCAAGCCATGTTCA  550

seq1  TTCTCTGATGGTGGTATTTTGATTGTGTATGGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATGGTGGTATTTTGATTGTGTATGGAATTC  587


seq1: chr5_42602141_42603238
seq2: B6Ng01-337M07.g_67_1164

seq1  GAATTCTAGAATGCAGAATGAGTGTGGCAAAATTATAGGTTGTTCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAATGCAGAATGAGTGTGGCAAAATTATAGGTTGTTCATTTC  50

seq1  TGCTGTAATGCTATACATCAGGAAAAAAGCATACTAGGATAGACTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATGCTATACATCAGGAAAAAAGCATACTAGGATAGACTTTCAC  100

seq1  AGAAGTATTTGTAAATAACTCATCCATGATCATGATAACGAAGTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTTGTAAATAACTCATCCATGATCATGATAACGAAGTCTGTGG  150

seq1  CATATTTCTATTTACTAGACTTCTTTTACTTTTGGTGCTGGAGACCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTATTTACTAGACTTCTTTTACTTTTGGTGCTGGAGACCTCTG  200

seq1  CCTACCTTGTCATCAGTAATTTATACGGAATCTATCCAACAGTTTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTGTCATCAGTAATTTATACGGAATCTATCCAACAGTTTGGCTG  250

seq1  TCAATTCCTGGGAACAAGATGGGAGAAAAAGGAAGTGTCAAAAGCTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTGGGAACAAGATGGGAGAAAAAGGAAGTGTCAAAAGCTACAC  300

seq1  ATTTTCAATGCTATAATGAAAATAGTATGGAGACCATGGTTATCATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATGCTATAATGAAAATAGTATGGAGACCATGGTTATCATTGAA  350

seq1  GTTATTATATAGAGACTATAGTTATTAACAGTATGCTGTATTCTTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATATAGAGACTATAGTTATTAACAGTATGCTGTATTCTTTAACT  400

seq1  GTACTGGGAGCAGTCTTTATATTCTCAACATTCACATGCACCCCTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGAGCAGTCTTTATATTCTCAACATTCACATGCACCCCTCCCTC  450

seq1  CAGCACACACTATTCAGTTTGTAACCTTTTTTTTTGCTCATTAACCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACACTATTCAGTTTGTAACCTTTTTTTTTGCTCATTAACCTACC  500

seq1  CTGGGAGATTTTCCAAAGTCCTATTTTCCATTCCTCCCCCAGAAAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGATTTTCCAAAGTCCTATTTTCCATTCCTCCCCCAGAAAACTTG  550

seq1  ATTCAATATTTAAGTGAACACTATTAATTCTCATAAGGCTGTCAGAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTTAAGTGAACACTATTAATTCTCATAAGGCTGTCAGAGGGC  600

seq1  CCCATATACATCCCACTTTGAGAAATATCCTTTTGGATACTCTTGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATACATCCCACTTTGAGAAATATCCTTTTGGATACTCTTGTTCCA  650

seq1  TGGCTAACCCCATCCCCATCCCATCCCAGCCCCAGCCCCATCCTCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAACCCCATCCCCATCCCATCCCAGCCCCAGCCCCATCCTCAGCCC  700

seq1  CATCCCCATCCCCATCCCCAGCCCCAGCCCCATCCCCAGCCCCAGCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCATCCCCATCCCCAGCCCCAGCCCCATCCCCAGCCCCAGCCCCA  750

seq1  GCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGC  800

seq1  CCCAGCTTGTACCAGCCCATGTCTATACCATCCTTTTTGCTGGTGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGTACCAGCCCATGTCTATACCATCCTTTTTGCTGGTGTTCCA  850

seq1  CCTCCCTTTTATGTTGGTATAGTGAGCTCT-GGTTCACCCTTAGCTACCT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCCCTTTTATGTTGGTATAGTGAGCTCTGGGTTCACCCTTAGCTACCT  900

seq1  AACTCATGTGTTAACCTTTTCAGTCCCTTTAGGCA-GCCTCATGCCAGAC  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTCATGTGTTAACCTTTTCAGTCCCTTTAGGCAGGCCTCATGCCAGAC  950

seq1  TCAG-AATCCCACTCCCCCTCTTATCTCTGTTTCCTTAACCCTTTCTGCA  997
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGAAATCCCACTCCCCCTCTTATCTCTGTTTCATTAACCCTTTCTGCA  1000

seq1  CTCTCTAATTATAGTAGCCACACAG-AAATACAGGCTTTTTGTTTTCATA  1046
      ||||||||||||||||||||||||| ||||||||||||||    ||||||
seq2  CTCTCTAATTATAGTAGCCACACAGAAAATACAGGCTTTT--GCTTCATA  1048

seq1  -TCTGTTCCGTGGATAACTGGGATCTTGTATTAGTCACCTTTGTCTCTAA  1095
       |||||| ||||||| ||| ||||  |||| |||||||||||||||||||
seq2  TTCTGTT-CGTGGATTACT-GGATTCTGTA-TAGTCACCTTTGTCTCTAA  1095

seq1  CAC  1098
      |||
seq2  CAC  1098


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